Wall clock time and date at job start Tue Mar 31 2020 23:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46617 * 2 1 4 4 S 1.65601 * 119.99688 * 165.00053 * 3 2 1 5 5 O 1.42108 * 104.27577 * 308.92374 * 4 3 2 6 6 O 1.42104 * 104.27720 * 181.07006 * 4 3 2 7 7 C 1.81400 * 104.45199 * 64.99671 * 4 3 2 8 8 C 1.52993 * 109.47222 * 179.97438 * 7 4 3 9 9 N 1.46498 * 109.47472 * 180.02562 * 8 7 4 10 10 S 1.65601 * 120.00315 * 165.27589 * 9 8 7 11 11 O 1.42102 * 104.27710 * 180.79984 * 10 9 8 12 12 O 1.42101 * 104.27317 * 308.65327 * 10 9 8 13 13 C 1.81389 * 104.44936 * 64.72563 * 10 9 8 14 14 C 1.53007 * 109.47309 * 173.81201 * 13 10 9 15 15 C 1.50700 * 115.54854 * 65.19124 * 14 13 10 16 16 H 1.07999 * 120.00034 * 264.78379 * 15 14 13 17 17 C 1.37876 * 119.99863 * 84.78912 * 15 14 13 18 18 N 1.31516 * 120.00071 * 352.22587 * 17 15 14 19 19 Si 1.86803 * 119.99795 * 172.22501 * 17 15 14 20 20 H 1.48495 * 109.47397 * 60.00211 * 19 17 15 21 21 H 1.48501 * 109.46768 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 299.99664 * 19 17 15 23 23 C 1.53002 * 117.49610 * 279.52810 * 14 13 10 24 24 C 1.52995 * 117.49864 * 210.86683 * 14 13 10 25 25 H 1.09008 * 109.46983 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47627 * 300.00054 * 1 2 3 27 27 H 1.08998 * 109.47154 * 60.00913 * 1 2 3 28 28 H 1.08995 * 109.47627 * 239.99946 * 2 1 3 29 29 H 1.09006 * 109.47095 * 119.99444 * 2 1 3 30 30 H 0.97001 * 120.00203 * 344.99610 * 3 2 1 31 31 H 1.09004 * 109.46778 * 59.99738 * 7 4 3 32 32 H 1.08999 * 109.46872 * 300.00247 * 7 4 3 33 33 H 1.08997 * 109.47469 * 59.99829 * 8 7 4 34 34 H 1.08999 * 109.47488 * 299.99979 * 8 7 4 35 35 H 0.97001 * 119.99696 * 345.00454 * 9 8 7 36 36 H 1.09006 * 109.47337 * 293.80721 * 13 10 9 37 37 H 1.09002 * 109.47632 * 53.81361 * 13 10 9 38 38 H 0.97003 * 120.00122 * 185.02862 * 18 17 15 39 39 H 1.08996 * 117.49740 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.49983 * 145.01990 * 23 14 13 41 41 H 1.09000 * 117.49768 * 214.97541 * 24 14 13 42 42 H 1.09001 * 117.49907 * 359.97251 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 16 3.6003 1.7002 0.3712 5 8 3.8178 1.0144 1.5966 6 8 3.6992 3.1159 0.2964 7 6 4.5450 0.9244 -0.9690 8 6 6.0400 1.1527 -0.7376 9 7 6.8030 0.5266 -1.8203 10 16 8.3988 0.9116 -2.0387 11 8 8.7933 0.1430 -3.1670 12 8 8.4143 2.3319 -2.0782 13 6 9.2196 0.3074 -0.5383 14 6 10.7341 0.4672 -0.6859 15 6 11.2322 1.8867 -0.7751 16 1 11.4032 2.3393 -1.7406 17 6 11.4698 2.6075 0.3760 18 7 11.1193 2.1154 1.5442 19 14 12.2896 4.2830 0.2763 20 1 11.4575 5.1928 -0.5513 21 1 12.4313 4.8469 1.6428 22 1 13.6325 4.1411 -0.3417 23 6 11.4812 -0.5957 -1.4940 24 6 11.6249 -0.5505 0.0294 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.4148 2.1090 -0.2175 31 1 4.2535 1.3661 -1.9219 32 1 4.3389 -0.1458 -0.9865 33 1 6.3318 0.7113 0.2153 34 1 6.2458 2.2229 -0.7204 35 1 6.3745 -0.1163 -2.4067 36 1 8.8756 0.8831 0.3210 37 1 8.9781 -0.7453 -0.3907 38 1 11.2193 2.6518 2.3462 39 1 10.8938 -1.4090 -1.9200 40 1 12.3333 -0.2684 -2.0897 41 1 12.5715 -0.1934 0.4351 42 1 11.1320 -1.3337 0.6055 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365645310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:25 Heat of formation + Delta-G solvation = -123.693982 kcal Electronic energy + Delta-G solvation = -26127.380488 eV Core-core repulsion = 22169.751994 eV Total energy + Delta-G solvation = -3957.628493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -37.36758 -36.77923 -36.44443 -36.35094 -36.11067 -35.94198 -35.12440 -32.04028 -30.33796 -30.15922 -28.20769 -25.45569 -23.66702 -23.33064 -21.22823 -19.94557 -19.63080 -18.85452 -17.96315 -17.24387 -16.82884 -16.51303 -16.22464 -15.92575 -15.66006 -15.14300 -15.06636 -14.72771 -14.56994 -14.32969 -13.78204 -13.55199 -13.15679 -12.83076 -12.49520 -12.34869 -12.26612 -12.24461 -12.08625 -11.97625 -11.83720 -11.82944 -11.75924 -11.34089 -11.23692 -11.05586 -10.89958 -10.89186 -10.60817 -10.47590 -10.14684 -9.90724 -9.77648 -9.39018 -8.97314 -8.56055 -8.11510 -6.13335 -4.24622 -0.08183 0.99215 2.40165 3.30436 3.34398 3.37025 3.43222 3.52761 3.90145 4.10704 4.38572 4.42148 4.44107 4.52748 4.61918 4.81969 4.92085 5.02879 5.06117 5.13671 5.19061 5.28851 5.37478 5.41368 5.49523 5.58522 5.67203 5.89631 5.96297 6.23561 6.34846 6.55500 6.58944 6.70522 6.96649 7.08442 7.23005 7.38202 7.81062 8.19585 8.80903 9.47033 10.94254 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003207 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.236516 B = 8727.757428 C = 9471.204891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 N -1.121 6.121 4 S 2.616 3.384 5 O -0.947 6.947 6 O -0.948 6.948 7 C -0.641 4.641 8 C 0.127 3.873 9 N -1.127 6.127 10 S 2.602 3.398 11 O -0.970 6.970 12 O -0.946 6.946 13 C -0.556 4.556 14 C 0.043 3.957 15 C -0.519 4.519 16 H 0.068 0.932 17 C 0.083 3.917 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.208 4.208 24 C -0.140 4.140 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.418 0.582 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.412 0.588 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.265 0.735 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.608 -7.015 -2.854 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.882 5.882 4 S 2.706 3.294 5 O -0.937 6.937 6 O -0.938 6.938 7 C -0.770 4.770 8 C -0.002 4.002 9 N -0.884 5.884 10 S 2.699 3.301 11 O -0.961 6.961 12 O -0.935 6.935 13 C -0.689 4.689 14 C 0.041 3.959 15 C -0.556 4.556 16 H 0.087 0.913 17 C -0.123 4.123 18 N -0.509 5.509 19 Si 0.718 3.282 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.245 4.245 24 C -0.179 4.179 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.253 0.747 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.244 0.756 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.723 -6.086 -2.499 20.792 hybrid contribution -0.206 0.080 -0.257 0.339 sum -19.929 -6.006 -2.756 20.996 Atomic orbital electron populations 1.21950 0.94001 1.03047 1.02855 1.21332 0.96768 0.81685 1.02211 1.55700 1.29009 1.14648 1.88815 1.04913 0.73792 0.74699 0.76014 1.93630 1.84566 1.76251 1.39253 1.93650 1.85133 1.27846 1.87134 1.30889 1.09021 1.15281 1.21850 1.20869 0.87259 1.00513 0.91510 1.55995 1.30501 1.58795 1.43081 1.05363 0.72189 0.75153 0.77379 1.93513 1.81066 1.72951 1.48535 1.93552 1.84415 1.28755 1.86817 1.30009 1.10135 1.09286 1.19483 1.18268 0.84650 0.92182 1.00828 1.20487 1.46444 0.95308 0.93398 0.91347 1.24958 0.94252 0.97984 0.95091 1.69958 1.45676 1.36936 0.98328 0.86644 0.80306 0.83895 0.77375 1.19386 1.21071 1.19921 1.23201 1.04201 1.02337 0.94784 1.22558 1.02251 1.01035 0.92106 0.90944 0.91683 0.91915 0.91727 0.89958 0.74744 0.83897 0.84333 0.90101 0.88508 0.75553 0.84659 0.87993 0.92552 0.90695 0.89496 0.89532 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 10.05 37.16 0.37 -0.22 16 2 C 0.11 0.52 6.85 -4.04 -0.03 0.49 16 3 N -1.12 -7.20 5.89 -10.61 -0.06 -7.26 16 4 S 2.62 25.96 5.46 -107.50 -0.59 25.38 16 5 O -0.95 -12.46 17.50 -57.54 -1.01 -13.46 16 6 O -0.95 -13.03 18.08 -57.54 -1.04 -14.08 16 7 C -0.64 -5.28 6.21 37.15 0.23 -5.04 16 8 C 0.13 1.62 6.13 -4.05 -0.02 1.59 16 9 N -1.13 -15.70 5.89 -10.62 -0.06 -15.76 16 10 S 2.60 51.35 5.19 -107.50 -0.56 50.79 16 11 O -0.97 -20.65 18.08 -57.54 -1.04 -21.69 16 12 O -0.95 -22.30 17.18 -57.54 -0.99 -23.28 16 13 C -0.56 -11.46 5.92 37.16 0.22 -11.24 16 14 C 0.04 1.04 1.32 -155.66 -0.21 0.84 16 15 C -0.52 -14.18 8.18 -34.44 -0.28 -14.47 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C 0.08 2.26 5.38 -17.82 -0.10 2.16 16 18 N -0.87 -24.07 12.98 55.43 0.72 -23.35 16 19 Si 0.89 21.49 29.55 -169.99 -5.02 16.47 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.21 -4.52 9.96 -26.69 -0.27 -4.78 16 24 C -0.14 -3.17 9.49 -26.69 -0.25 -3.42 16 25 H 0.07 0.20 8.14 -51.92 -0.42 -0.23 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.45 7.69 -51.93 -0.40 0.05 16 30 H 0.42 2.10 8.62 -34.47 -0.30 1.81 16 31 H 0.14 0.91 8.14 -51.92 -0.42 0.48 16 32 H 0.14 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.34 7.71 -51.93 -0.40 0.94 16 35 H 0.41 4.43 8.62 -34.47 -0.30 4.14 16 36 H 0.14 2.88 8.14 -51.92 -0.42 2.46 16 37 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 38 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -38.14 381.18 -10.67 -48.80 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.43 Total: 5.80 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: -0.33 Total: -34.10 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.59 Total: -46.37 kcal Atomic # 8 Polarization: -68.44 SS G_CDS: -4.08 Total: -72.51 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 77.31 SS G_CDS: -1.14 Total: 76.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.14 -10.67 -48.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365645310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.891 kcal (2) G-P(sol) polarization free energy of solvation -38.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds