Wall clock time and date at job start Tue Mar 31 2020 23:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 S 1.65596 * 119.99876 * 2 1 4 4 O 1.42097 * 104.27757 * 308.92728 * 3 2 1 5 5 O 1.42101 * 104.27678 * 181.07032 * 3 2 1 6 6 C 1.81401 * 104.45219 * 65.00027 * 3 2 1 7 7 C 1.52997 * 109.47541 * 180.02562 * 6 3 2 8 8 C 1.52998 * 109.47785 * 179.97438 * 7 6 3 9 9 N 1.46495 * 109.47455 * 179.97438 * 8 7 6 10 10 S 1.65599 * 119.99648 * 165.27299 * 9 8 7 11 11 O 1.42110 * 104.27597 * 180.79661 * 10 9 8 12 12 O 1.42098 * 104.28200 * 308.65315 * 10 9 8 13 13 C 1.81403 * 104.45003 * 64.72875 * 10 9 8 14 14 C 1.52997 * 109.47124 * 173.80420 * 13 10 9 15 15 C 1.50700 * 115.54884 * 65.19552 * 14 13 10 16 16 H 1.08004 * 120.00091 * 264.77971 * 15 14 13 17 17 C 1.37879 * 120.00026 * 84.78402 * 15 14 13 18 18 N 1.31516 * 119.99983 * 352.23228 * 17 15 14 19 19 Si 1.86802 * 120.00072 * 172.23252 * 17 15 14 20 20 H 1.48497 * 109.47048 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47087 * 120.00078 * 19 17 15 22 22 H 1.48503 * 109.46948 * 239.99695 * 19 17 15 23 23 C 1.53003 * 117.50167 * 279.52594 * 14 13 10 24 24 C 1.53002 * 117.50015 * 210.86444 * 14 13 10 25 25 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46983 * 300.00441 * 1 2 3 27 27 H 1.08998 * 109.46641 * 59.99952 * 1 2 3 28 28 H 0.96995 * 120.00160 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47485 * 59.99758 * 6 3 2 30 30 H 1.09006 * 109.46903 * 299.99892 * 6 3 2 31 31 H 1.08998 * 109.47048 * 59.99344 * 7 6 3 32 32 H 1.09006 * 109.46814 * 299.99800 * 7 6 3 33 33 H 1.09006 * 109.46863 * 59.99089 * 8 7 6 34 34 H 1.08995 * 109.46714 * 300.00381 * 8 7 6 35 35 H 0.97002 * 120.00143 * 345.00199 * 9 8 7 36 36 H 1.08997 * 109.47169 * 293.80869 * 13 10 9 37 37 H 1.09005 * 109.46878 * 53.80995 * 13 10 9 38 38 H 0.97003 * 120.00122 * 185.02211 * 18 17 15 39 39 H 1.08997 * 117.49767 * 359.97438 * 23 14 13 40 40 H 1.08999 * 117.49842 * 145.02264 * 23 14 13 41 41 H 1.09001 * 117.49716 * 214.98342 * 24 14 13 42 42 H 1.09001 * 117.49794 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6607 1.0492 -0.0257 6 6 1.8765 2.1974 1.5920 7 6 2.5889 3.5459 1.7132 8 6 2.2371 4.1900 3.0556 9 7 2.9199 5.4809 3.1718 10 16 2.4527 6.5628 4.3353 11 8 3.3066 7.6813 4.1368 12 8 1.0465 6.6753 4.1649 13 6 2.8399 5.7367 5.9032 14 6 2.5943 6.7035 7.0633 15 6 1.1615 7.1237 7.2669 16 1 0.8017 8.0444 6.8319 17 6 0.3099 6.3328 8.0088 18 7 0.6999 5.1424 8.4095 19 14 -1.3977 6.9520 8.4447 20 1 -1.5904 8.3117 7.8796 21 1 -2.4171 6.0316 7.8801 22 1 -1.5428 7.0052 9.9217 23 6 3.6829 7.7353 7.3656 24 6 3.4691 6.5489 8.3090 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.9501 -0.8400 0.0004 29 1 2.1958 1.5432 2.4033 30 1 0.7987 2.3497 1.6510 31 1 2.2692 4.1999 0.9019 32 1 3.6667 3.3939 1.6541 33 1 2.5565 3.5360 3.8672 34 1 1.1594 4.3419 3.1143 35 1 3.6481 5.7003 2.5698 36 1 2.2022 4.8603 6.0193 37 1 3.8853 5.4279 5.9027 38 1 0.0771 4.5569 8.8681 39 1 4.5742 7.7250 6.7382 40 1 3.3627 8.7179 7.7122 41 1 3.0083 6.7515 9.2758 42 1 4.2193 5.7582 8.3022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663505668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:55 Heat of formation + Delta-G solvation = -126.875464 kcal Electronic energy + Delta-G solvation = -25845.496929 eV Core-core repulsion = 21887.730477 eV Total energy + Delta-G solvation = -3957.766453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -37.42048 -36.80627 -36.66256 -36.27854 -36.16104 -35.38762 -35.10799 -32.56369 -32.08323 -28.21091 -26.40211 -26.34573 -25.49028 -22.35513 -21.24466 -19.86701 -19.62802 -18.68621 -18.14565 -17.17394 -16.98108 -16.63051 -16.41712 -16.00876 -15.53553 -15.15942 -14.89188 -14.74723 -14.30492 -14.23438 -13.81441 -13.45982 -13.22909 -13.20608 -13.02062 -12.41067 -12.31148 -12.30871 -12.00239 -11.97989 -11.87614 -11.55569 -11.52857 -11.30983 -11.18261 -11.05744 -10.98418 -10.84467 -10.60716 -10.48706 -10.15662 -9.97291 -9.76348 -9.29434 -8.98978 -8.61271 -8.13153 -6.18557 -4.28747 -0.10128 1.02460 2.36578 3.24984 3.30720 3.33032 3.40789 3.47536 3.85918 4.21473 4.33628 4.40952 4.47618 4.55726 4.64222 4.94475 4.97984 5.04738 5.10986 5.16837 5.21311 5.27779 5.32643 5.39672 5.46518 5.70595 5.74542 5.92716 6.06219 6.22676 6.33587 6.48994 6.57117 6.69450 6.94858 7.16154 7.22814 7.35958 7.76514 8.16542 8.77388 9.42534 10.89148 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.002878 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.082274 B = 9726.423358 C =10615.607188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.125 6.125 3 S 2.615 3.385 4 O -0.954 6.954 5 O -0.958 6.958 6 C -0.629 4.629 7 C -0.120 4.120 8 C 0.124 3.876 9 N -1.136 6.136 10 S 2.606 3.394 11 O -0.972 6.972 12 O -0.950 6.950 13 C -0.554 4.554 14 C 0.042 3.958 15 C -0.515 4.515 16 H 0.069 0.931 17 C 0.082 3.918 18 N -0.875 5.875 19 Si 0.893 3.107 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.208 4.208 24 C -0.141 4.141 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.418 0.582 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -12.665 -12.991 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.884 5.884 3 S 2.706 3.294 4 O -0.944 6.944 5 O -0.948 6.948 6 C -0.759 4.759 7 C -0.160 4.160 8 C -0.004 4.004 9 N -0.893 5.893 10 S 2.704 3.296 11 O -0.963 6.963 12 O -0.939 6.939 13 C -0.687 4.687 14 C 0.040 3.960 15 C -0.552 4.552 16 H 0.087 0.913 17 C -0.123 4.123 18 N -0.511 5.511 19 Si 0.720 3.280 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.245 4.245 24 C -0.180 4.180 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.251 0.749 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.151 0.849 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.969 -11.537 -13.627 17.963 hybrid contribution -0.550 -0.926 1.132 1.562 sum 1.419 -12.462 -12.495 17.705 Atomic orbital electron populations 1.21537 0.78629 1.04366 1.02167 1.55410 1.16063 1.24657 1.92289 1.04917 0.73695 0.73801 0.76951 1.93613 1.78781 1.72237 1.49721 1.93615 1.32680 1.81213 1.87286 1.30571 1.11918 1.09081 1.24347 1.21504 1.01080 0.93064 1.00359 1.21182 0.98434 0.84275 0.96516 1.56025 1.49712 1.31474 1.52075 1.05179 0.74559 0.73983 0.75924 1.93513 1.68809 1.48558 1.85391 1.93533 1.30724 1.84941 1.84733 1.29980 1.08256 1.12818 1.17683 1.18288 0.92287 0.93618 0.91831 1.20585 0.92527 1.08294 1.33783 0.91258 1.24956 0.98508 0.94669 0.94197 1.69989 1.35180 1.07511 1.38422 0.86509 0.83768 0.79759 0.78004 1.19193 1.20665 1.20841 1.23202 1.00740 0.95265 1.05301 1.22556 1.01709 0.97819 0.95955 0.89947 0.91984 0.91242 0.74876 0.84195 0.84341 0.89292 0.89497 0.91251 0.89565 0.75695 0.84880 0.88162 0.92808 0.90642 0.89496 0.89584 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 11.03 59.85 0.66 1.00 16 2 N -1.13 -6.27 6.08 -16.63 -0.10 -6.37 16 3 S 2.61 21.46 5.46 -107.50 -0.59 20.88 16 4 O -0.95 -11.26 17.73 -57.54 -1.02 -12.28 16 5 O -0.96 -10.88 18.08 -57.54 -1.04 -11.92 16 6 C -0.63 -4.21 6.03 37.16 0.22 -3.98 16 7 C -0.12 -1.08 5.36 -26.73 -0.14 -1.23 16 8 C 0.12 1.46 6.12 -4.05 -0.02 1.44 16 9 N -1.14 -15.86 5.89 -10.62 -0.06 -15.92 16 10 S 2.61 50.82 5.19 -107.50 -0.56 50.26 16 11 O -0.97 -20.89 18.08 -57.54 -1.04 -21.93 16 12 O -0.95 -21.91 17.18 -57.54 -0.99 -22.90 16 13 C -0.55 -11.17 5.92 37.16 0.22 -10.95 16 14 C 0.04 1.00 1.32 -155.66 -0.21 0.80 16 15 C -0.51 -13.82 8.18 -34.44 -0.28 -14.10 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C 0.08 2.17 5.38 -17.82 -0.10 2.08 16 18 N -0.88 -23.42 12.98 55.43 0.72 -22.70 16 19 Si 0.89 20.98 29.55 -169.99 -5.02 15.95 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C -0.21 -4.49 9.96 -26.69 -0.27 -4.76 16 24 C -0.14 -3.15 9.49 -26.69 -0.25 -3.41 16 25 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.18 7.73 -51.93 -0.40 -0.22 16 27 H 0.07 0.35 8.04 -51.93 -0.42 -0.07 16 28 H 0.42 1.70 8.92 -34.46 -0.31 1.39 16 29 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.14 0.70 7.77 -51.92 -0.40 0.30 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.08 7.71 -51.93 -0.40 0.68 16 35 H 0.41 4.71 8.62 -34.47 -0.30 4.41 16 36 H 0.13 2.74 8.14 -51.93 -0.42 2.31 16 37 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 38 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 41 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -38.05 380.77 -10.55 -48.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.42 Total: 5.70 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: -0.17 Total: -33.10 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.56 Total: -44.99 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -4.09 Total: -69.03 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 72.28 SS G_CDS: -1.14 Total: 71.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.05 -10.55 -48.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663505668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.278 kcal (2) G-P(sol) polarization free energy of solvation -38.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds