Wall clock time and date at job start Tue Mar 31 2020 23:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 S 1.65596 * 119.99876 * 2 1 4 4 O 1.42097 * 104.27757 * 308.92728 * 3 2 1 5 5 O 1.42101 * 104.27678 * 181.07032 * 3 2 1 6 6 C 1.81401 * 104.45219 * 65.00027 * 3 2 1 7 7 C 1.52997 * 109.47541 * 180.02562 * 6 3 2 8 8 C 1.52998 * 109.47785 * 179.97438 * 7 6 3 9 9 N 1.46495 * 109.47455 * 179.97438 * 8 7 6 10 10 S 1.65599 * 119.99648 * 165.27299 * 9 8 7 11 11 O 1.42110 * 104.27597 * 180.79661 * 10 9 8 12 12 O 1.42098 * 104.28200 * 308.65315 * 10 9 8 13 13 C 1.81403 * 104.45003 * 64.72875 * 10 9 8 14 14 C 1.52997 * 109.47124 * 173.80420 * 13 10 9 15 15 C 1.50700 * 115.54884 * 65.19552 * 14 13 10 16 16 H 1.08004 * 120.00091 * 264.77971 * 15 14 13 17 17 C 1.37879 * 120.00026 * 84.78402 * 15 14 13 18 18 N 1.31516 * 119.99983 * 352.23228 * 17 15 14 19 19 Si 1.86802 * 120.00072 * 172.23252 * 17 15 14 20 20 H 1.48497 * 109.47048 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47087 * 120.00078 * 19 17 15 22 22 H 1.48503 * 109.46948 * 239.99695 * 19 17 15 23 23 C 1.53003 * 117.50167 * 279.52594 * 14 13 10 24 24 C 1.53002 * 117.50015 * 210.86444 * 14 13 10 25 25 H 1.08996 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46983 * 300.00441 * 1 2 3 27 27 H 1.08998 * 109.46641 * 59.99952 * 1 2 3 28 28 H 0.96995 * 120.00160 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47485 * 59.99758 * 6 3 2 30 30 H 1.09006 * 109.46903 * 299.99892 * 6 3 2 31 31 H 1.08998 * 109.47048 * 59.99344 * 7 6 3 32 32 H 1.09006 * 109.46814 * 299.99800 * 7 6 3 33 33 H 1.09006 * 109.46863 * 59.99089 * 8 7 6 34 34 H 1.08995 * 109.46714 * 300.00381 * 8 7 6 35 35 H 0.97002 * 120.00143 * 345.00199 * 9 8 7 36 36 H 1.08997 * 109.47169 * 293.80869 * 13 10 9 37 37 H 1.09005 * 109.46878 * 53.80995 * 13 10 9 38 38 H 0.97003 * 120.00122 * 185.02211 * 18 17 15 39 39 H 1.08997 * 117.49767 * 359.97438 * 23 14 13 40 40 H 1.08999 * 117.49842 * 145.02264 * 23 14 13 41 41 H 1.09001 * 117.49716 * 214.98342 * 24 14 13 42 42 H 1.09001 * 117.49794 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6607 1.0492 -0.0257 6 6 1.8765 2.1974 1.5920 7 6 2.5889 3.5459 1.7132 8 6 2.2371 4.1900 3.0556 9 7 2.9199 5.4809 3.1718 10 16 2.4527 6.5628 4.3353 11 8 3.3066 7.6813 4.1368 12 8 1.0465 6.6753 4.1649 13 6 2.8399 5.7367 5.9032 14 6 2.5943 6.7035 7.0633 15 6 1.1615 7.1237 7.2669 16 1 0.8017 8.0444 6.8319 17 6 0.3099 6.3328 8.0088 18 7 0.6999 5.1424 8.4095 19 14 -1.3977 6.9520 8.4447 20 1 -1.5904 8.3117 7.8796 21 1 -2.4171 6.0316 7.8801 22 1 -1.5428 7.0052 9.9217 23 6 3.6829 7.7353 7.3656 24 6 3.4691 6.5489 8.3090 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.9501 -0.8400 0.0004 29 1 2.1958 1.5432 2.4033 30 1 0.7987 2.3497 1.6510 31 1 2.2692 4.1999 0.9019 32 1 3.6667 3.3939 1.6541 33 1 2.5565 3.5360 3.8672 34 1 1.1594 4.3419 3.1143 35 1 3.6481 5.7003 2.5698 36 1 2.2022 4.8603 6.0193 37 1 3.8853 5.4279 5.9027 38 1 0.0771 4.5569 8.8681 39 1 4.5742 7.7250 6.7382 40 1 3.3627 8.7179 7.7122 41 1 3.0083 6.7515 9.2758 42 1 4.2193 5.7582 8.3022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663505668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:54 Heat of formation + Delta-G solvation = -159.468408 kcal Electronic energy + Delta-G solvation = -25846.910266 eV Core-core repulsion = 21887.730477 eV Total energy + Delta-G solvation = -3959.179789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.55548 -38.17866 -38.00106 -37.41935 -37.02653 -36.75120 -35.82405 -34.07513 -33.44731 -29.83873 -27.50063 -27.16709 -26.76672 -23.14301 -22.98160 -21.50609 -20.42460 -20.10839 -18.80167 -18.41047 -18.29062 -17.84848 -17.29449 -16.95330 -16.82954 -16.65193 -16.34915 -15.82739 -15.62635 -15.37209 -14.90930 -14.65663 -14.24319 -13.93771 -13.74218 -13.71953 -13.63134 -13.20817 -13.13102 -13.09901 -13.05330 -12.91073 -12.88965 -12.84412 -12.73064 -12.48881 -12.43390 -12.23126 -12.16021 -11.89698 -11.63257 -11.51765 -10.86267 -10.54790 -10.49148 -10.40494 -9.85650 -8.18797 -6.32892 -0.74047 -0.48510 1.37716 1.41472 1.52505 1.81695 2.04992 2.40597 2.80097 2.95808 3.08549 3.27344 3.39646 3.45691 3.56805 3.82910 3.85976 4.00817 4.25155 4.32353 4.35440 4.50181 4.54821 4.58676 4.62297 4.68438 4.78850 4.86039 4.91412 4.96188 4.99137 5.05398 5.14062 5.22636 5.48154 5.59881 5.73162 6.14032 6.17568 6.24080 6.73218 7.39362 8.88413 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.002878 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.082274 B = 9726.423358 C =10615.607188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.629 3.371 4 O -0.996 6.996 5 O -0.993 6.993 6 C -0.619 4.619 7 C -0.128 4.128 8 C 0.110 3.890 9 N -1.120 6.120 10 S 2.622 3.378 11 O -0.997 6.997 12 O -0.993 6.993 13 C -0.552 4.552 14 C 0.011 3.989 15 C -0.535 4.535 16 H 0.047 0.953 17 C 0.045 3.955 18 N -0.890 5.890 19 Si 0.935 3.065 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.273 1.273 23 C -0.199 4.199 24 C -0.138 4.138 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.425 0.575 29 H 0.167 0.833 30 H 0.157 0.843 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.424 0.576 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.266 0.734 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 -14.230 -12.933 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.880 5.880 3 S 2.723 3.277 4 O -0.986 6.986 5 O -0.983 6.983 6 C -0.751 4.751 7 C -0.168 4.168 8 C -0.017 4.017 9 N -0.881 5.881 10 S 2.720 3.280 11 O -0.987 6.987 12 O -0.982 6.982 13 C -0.685 4.685 14 C 0.009 3.991 15 C -0.572 4.572 16 H 0.065 0.935 17 C -0.158 4.158 18 N -0.526 5.526 19 Si 0.760 3.240 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.236 4.236 24 C -0.177 4.177 25 H 0.122 0.878 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.261 0.739 29 H 0.185 0.815 30 H 0.175 0.825 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.362 -13.111 -13.588 19.029 hybrid contribution -0.674 -0.462 1.111 1.380 sum 1.688 -13.573 -12.477 18.513 Atomic orbital electron populations 1.21784 0.77587 1.05952 1.02541 1.55123 1.16667 1.24019 1.92158 1.04219 0.72706 0.73786 0.76957 1.93561 1.79227 1.73488 1.52287 1.93564 1.34920 1.81856 1.87959 1.30489 1.13054 1.08063 1.23504 1.21576 1.02509 0.94027 0.98681 1.21500 0.97857 0.83423 0.98914 1.55489 1.50197 1.31691 1.50743 1.04367 0.73393 0.74051 0.76220 1.93470 1.68946 1.50447 1.85827 1.93480 1.33412 1.85857 1.85472 1.29870 1.10439 1.11605 1.16575 1.18420 0.91274 0.95626 0.93804 1.20733 0.94675 1.07721 1.34074 0.93497 1.25473 1.01052 0.94978 0.94275 1.70017 1.36015 1.07837 1.38772 0.85864 0.80998 0.78965 0.78164 1.20022 1.19924 1.19864 1.23250 1.00770 0.94647 1.04933 1.22515 1.01732 0.98831 0.94634 0.87826 0.90267 0.92352 0.73908 0.81529 0.82467 0.89352 0.87961 0.89168 0.90573 0.73991 0.85372 0.84603 0.92480 0.88283 0.90115 0.91642 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.03 127.77 1.41 1.85 16 2 N -1.12 -10.50 6.08 -206.53 -1.25 -11.76 16 3 S 2.63 39.75 5.46 -56.49 -0.31 39.44 16 4 O -1.00 -23.17 17.73 -127.65 -2.26 -25.43 16 5 O -0.99 -21.59 18.08 -127.65 -2.31 -23.90 16 6 C -0.62 -6.56 6.03 71.98 0.43 -6.13 16 7 C -0.13 -1.99 5.36 30.59 0.16 -1.83 16 8 C 0.11 2.34 6.12 86.38 0.53 2.87 16 9 N -1.12 -29.07 5.89 -187.50 -1.10 -30.18 16 10 S 2.62 99.84 5.19 -56.49 -0.29 99.55 16 11 O -1.00 -41.92 18.08 -127.65 -2.31 -44.23 16 12 O -0.99 -46.05 17.18 -127.65 -2.19 -48.25 16 13 C -0.55 -21.29 5.92 71.98 0.43 -20.86 16 14 C 0.01 0.51 1.32 -52.93 -0.07 0.44 16 15 C -0.53 -28.94 8.18 25.60 0.21 -28.73 16 16 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 17 C 0.05 2.41 5.38 84.65 0.46 2.87 16 18 N -0.89 -47.11 12.98 21.45 0.28 -46.83 16 19 Si 0.93 42.89 29.55 68.60 2.03 44.92 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C -0.20 -8.35 9.96 30.62 0.30 -8.04 16 24 C -0.14 -5.99 9.49 30.62 0.29 -5.70 16 25 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.08 0.25 7.73 -2.39 -0.02 0.23 16 27 H 0.06 0.53 8.04 -2.39 -0.02 0.51 16 28 H 0.43 2.73 8.92 -96.75 -0.86 1.86 16 29 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.16 1.12 7.77 -2.39 -0.02 1.10 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.08 1.79 7.71 -2.39 -0.02 1.77 16 35 H 0.42 8.79 8.62 -96.74 -0.83 7.96 16 36 H 0.13 5.08 8.14 -2.39 -0.02 5.06 16 37 H 0.14 4.15 8.09 -2.39 -0.02 4.13 16 38 H 0.27 13.30 8.32 -92.71 -0.77 12.53 16 39 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.06 3.07 8.14 -2.39 -0.02 3.06 16 42 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -82.07 380.77 -6.23 -88.30 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.66 Total: 21.64 kcal Atomic # 6 Polarization: -67.43 SS G_CDS: 4.15 Total: -63.28 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.08 Total: -88.77 kcal Atomic # 8 Polarization: -132.73 SS G_CDS: -9.07 Total: -141.81 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 139.59 SS G_CDS: -0.60 Total: 138.99 kcal Total: -82.07 -6.23 -88.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663505668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.165 kcal (2) G-P(sol) polarization free energy of solvation -82.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds