Wall clock time and date at job start Tue Mar 31 2020 23:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47265 * 18.80421 * 3 2 1 5 5 N 1.46908 * 109.47359 * 177.35577 * 4 3 2 6 6 C 1.46899 * 110.99638 * 58.65907 * 5 4 3 7 7 C 1.50703 * 109.47057 * 66.04715 * 6 5 4 8 8 H 1.08000 * 120.00256 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00019 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99972 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99991 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46797 * 60.00519 * 11 9 7 13 13 H 1.48505 * 109.47034 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47202 * 300.00494 * 11 9 7 15 15 C 1.46900 * 110.99860 * 294.70998 * 5 4 3 16 16 C 1.50702 * 109.47089 * 290.99315 * 15 5 4 17 17 C 1.38414 * 119.87416 * 103.56200 * 16 15 5 18 18 C 1.37912 * 120.18635 * 180.27685 * 17 16 15 19 19 C 1.39457 * 119.93389 * 359.49965 * 18 17 16 20 Xx 1.57003 * 120.11735 * 180.27251 * 19 18 17 21 20 O 1.42008 * 119.99988 * 180.23077 * 20 19 18 22 21 O 1.41995 * 120.00412 * 0.22758 * 20 19 18 23 22 C 1.39467 * 119.76139 * 0.49729 * 19 18 17 24 23 Cl 1.73605 * 120.09486 * 179.77193 * 23 19 18 25 24 C 1.38408 * 119.81425 * 359.75587 * 23 19 18 26 25 F 1.35093 * 119.97573 * 179.97438 * 25 23 19 27 26 H 1.09003 * 109.47603 * 258.80721 * 3 2 1 28 27 H 1.09000 * 109.47583 * 138.80449 * 3 2 1 29 28 H 1.09000 * 109.47043 * 57.35587 * 4 3 2 30 29 H 1.08995 * 109.47418 * 297.35589 * 4 3 2 31 30 H 1.09002 * 109.46967 * 186.04505 * 6 5 4 32 31 H 1.09002 * 109.47695 * 306.04504 * 6 5 4 33 32 H 0.97003 * 120.00319 * 179.97438 * 10 9 7 34 33 H 1.08998 * 109.47094 * 171.00125 * 15 5 4 35 34 H 1.08998 * 109.47470 * 50.99125 * 15 5 4 36 35 H 1.07998 * 119.91090 * 0.02562 * 17 16 15 37 36 H 1.08001 * 120.02979 * 179.74216 * 18 17 16 38 37 H 0.96698 * 114.00042 * 180.02562 * 21 20 19 39 38 H 0.96697 * 114.00439 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.3646 -0.4650 5 7 4.5863 -1.3439 -0.5256 6 6 5.1627 -1.0178 0.7856 7 6 4.8597 -2.1287 1.7578 8 1 4.2950 -2.9906 1.4342 9 6 5.3034 -2.0448 3.0606 10 7 5.9906 -0.9951 3.4549 11 14 4.9272 -3.4215 4.2658 12 1 5.5160 -4.6904 3.7673 13 1 5.5100 -3.0920 5.5914 14 1 3.4561 -3.5763 4.3970 15 6 5.0574 -0.4080 -1.5552 16 6 4.7131 -0.9473 -2.9197 17 6 3.6499 -0.4107 -3.6250 18 6 3.3256 -0.9032 -4.8717 19 6 4.0772 -1.9376 -5.4283 20 8 4.4798 -3.5539 -7.4125 21 8 2.6251 -1.9467 -7.5736 22 6 5.1481 -2.4764 -4.7156 23 17 6.0858 -3.7683 -5.3978 24 6 5.4613 -1.9780 -3.4629 25 9 6.4976 -2.4979 -2.7694 26 1 2.9713 0.2003 1.0081 27 1 2.9710 0.7741 -0.6768 28 1 2.7172 -1.5851 -1.4541 29 1 2.7949 -2.1323 0.2378 30 1 6.2424 -0.9035 0.6895 31 1 4.7299 -0.0867 1.1515 32 1 6.3024 -0.9359 4.3715 33 1 6.1379 -0.2910 -1.4729 34 1 4.5754 0.5595 -1.4148 35 1 3.0700 0.3931 -3.1961 36 1 2.4929 -0.4854 -5.4180 37 1 4.1825 -3.8303 -8.2901 38 1 2.4797 -2.3558 -8.4376 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250359482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:24 Heat of formation + Delta-G solvation = 119.986315 kcal Electronic energy + Delta-G solvation = -25207.365399 eV Core-core repulsion = 21113.926115 eV Total energy + Delta-G solvation = -4093.439284 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.085 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -48.54098 -39.59215 -37.96337 -36.70637 -35.87683 -35.44161 -31.83630 -31.35376 -29.99899 -29.11472 -28.89870 -28.49680 -25.76172 -25.40576 -22.25805 -21.96172 -20.51377 -19.24429 -18.15879 -17.19064 -16.61654 -16.26812 -16.16499 -15.71105 -15.31782 -15.10329 -14.90590 -14.48708 -14.10764 -13.84843 -13.46572 -13.32627 -13.22829 -12.89150 -12.63891 -12.58004 -12.31197 -12.24673 -12.14254 -12.08860 -11.81702 -11.64909 -11.44196 -11.32015 -11.09524 -11.07661 -10.88041 -10.71181 -9.70226 -9.28487 -8.65668 -8.26630 -8.15083 -7.29000 -6.97046 -6.64526 -5.63034 -4.07093 0.01906 1.42071 1.52985 1.72258 1.76075 1.97304 2.44969 2.54806 2.55574 2.58376 2.95848 3.44319 3.80928 4.06822 4.48546 4.54674 4.57895 4.63297 4.68006 4.79881 4.90063 5.02643 5.16973 5.22290 5.28334 5.31800 5.53100 5.59298 5.70558 5.74705 5.77387 5.97894 6.13992 6.24321 6.48065 6.66985 6.74216 6.94250 7.16493 7.36371 7.57771 9.91320 10.20956 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.003632 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.737723 B = 7707.543865 C = 9128.690724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.209 3.791 3 C -0.072 4.072 4 C 0.050 3.950 5 N -0.527 5.527 6 C 0.081 3.919 7 C -0.081 4.081 8 H 0.138 0.862 9 C -0.069 4.069 10 N -0.615 5.615 11 Si 0.950 3.050 12 H -0.242 1.242 13 H -0.254 1.254 14 H -0.244 1.244 15 C 0.103 3.897 16 C -0.149 4.149 17 C -0.078 4.078 18 C -0.126 4.126 19 C 0.215 3.785 20 O -0.780 6.780 21 O -0.882 6.882 22 C -0.090 4.090 23 Cl -0.013 7.013 24 C 0.133 3.867 25 F -0.122 7.122 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.331 0.669 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.138 0.862 36 H 0.151 0.849 37 H 0.271 0.729 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 5.150 25.505 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.110 4.110 3 C -0.113 4.113 4 C -0.079 4.079 5 N -0.249 5.249 6 C -0.044 4.044 7 C -0.100 4.100 8 H 0.155 0.845 9 C -0.281 4.281 10 N -0.263 5.263 11 Si 0.768 3.232 12 H -0.165 1.165 13 H -0.177 1.177 14 H -0.167 1.167 15 C -0.024 4.024 16 C -0.151 4.151 17 C -0.097 4.097 18 C -0.144 4.144 19 C 0.190 3.810 20 O -0.596 6.596 21 O -0.701 6.701 22 C -0.118 4.118 23 Cl 0.016 6.984 24 C 0.112 3.888 25 F -0.100 7.100 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.526 5.055 26.641 27.491 hybrid contribution 0.084 -0.270 -0.669 0.726 sum 4.609 4.785 25.972 26.808 Atomic orbital electron populations 1.81265 1.12942 1.08202 1.08526 1.28905 0.94968 0.93619 0.93469 1.20110 0.82681 1.03096 1.05449 1.22372 0.87563 0.93866 1.04118 1.62272 1.06380 1.51122 1.05150 1.21286 1.00839 0.95658 0.86665 1.25397 0.94225 0.98347 0.91982 0.84482 1.26727 0.98469 1.01763 1.01189 1.69897 1.10018 1.23454 1.22931 0.85422 0.81913 0.78275 0.77617 1.16518 1.17703 1.16747 1.20895 1.01463 0.93015 0.87019 1.19439 0.98892 0.99226 0.97542 1.20836 0.96040 0.99625 0.93211 1.21311 1.02339 0.96842 0.93920 1.31032 0.85407 0.85509 0.79050 1.93699 1.67868 1.67884 1.30105 1.93565 1.74198 1.72638 1.29712 1.21276 0.98948 0.98777 0.92770 1.98378 1.69400 1.45948 1.84687 1.17060 0.88074 0.95147 0.88546 1.91495 1.55075 1.85524 1.77950 0.87120 0.87082 0.88647 0.89244 0.87229 0.90773 0.85585 0.89038 0.92396 0.84451 0.83190 0.89916 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.70 18.54 42.15 0.78 -4.92 16 2 C 0.21 2.01 15.43 -20.76 -0.32 1.69 16 3 C -0.07 -0.42 5.02 -29.52 -0.15 -0.57 16 4 C 0.05 0.39 4.94 -3.82 -0.02 0.37 16 5 N -0.53 -4.41 4.67 -237.51 -1.11 -5.52 16 6 C 0.08 0.54 4.45 -4.97 -0.02 0.52 16 7 C -0.08 -0.53 8.53 -34.44 -0.29 -0.82 16 8 H 0.14 0.78 7.10 -52.49 -0.37 0.40 16 9 C -0.07 -0.45 5.46 -17.82 -0.10 -0.55 16 10 N -0.61 -4.46 13.29 55.43 0.74 -3.73 16 11 Si 0.95 5.54 29.54 -169.99 -5.02 0.52 16 12 H -0.24 -1.68 7.11 56.52 0.40 -1.28 16 13 H -0.25 -1.58 7.11 56.52 0.40 -1.18 16 14 H -0.24 -1.59 7.11 56.52 0.40 -1.19 16 15 C 0.10 0.94 4.65 -4.97 -0.02 0.91 16 16 C -0.15 -2.06 4.60 -104.47 -0.48 -2.54 16 17 C -0.08 -1.13 8.87 -39.64 -0.35 -1.48 16 18 C -0.13 -2.59 9.75 -39.25 -0.38 -2.97 16 19 C 0.21 5.55 9.79 -38.67 -0.38 5.17 16 20 O -0.78 -26.46 14.63 -57.73 -0.84 -27.31 16 21 O -0.88 -31.83 17.25 -57.73 -1.00 -32.82 16 22 C -0.09 -2.03 6.36 -39.06 -0.25 -2.27 16 23 Cl -0.01 -0.32 25.58 -51.86 -1.33 -1.64 16 24 C 0.13 2.35 7.21 -39.43 -0.28 2.06 16 25 F -0.12 -2.04 16.28 2.25 0.04 -2.01 16 26 H 0.11 0.45 6.40 -51.93 -0.33 0.12 16 27 H 0.11 0.51 6.24 -51.93 -0.32 0.19 16 28 H 0.10 0.94 6.64 -51.93 -0.34 0.60 16 29 H 0.09 0.60 6.89 -51.93 -0.36 0.24 16 30 H 0.11 0.81 7.89 -51.93 -0.41 0.40 16 31 H 0.08 0.40 6.02 -51.93 -0.31 0.08 16 32 H 0.33 1.95 8.31 -40.82 -0.34 1.61 16 33 H 0.09 0.82 7.77 -51.93 -0.40 0.41 16 34 H 0.06 0.37 5.85 -51.93 -0.30 0.07 16 35 H 0.14 1.41 8.00 -52.49 -0.42 0.99 16 36 H 0.15 3.26 7.77 -52.49 -0.41 2.85 16 37 H 0.27 8.91 8.90 45.56 0.41 9.32 16 38 H 0.27 9.23 8.90 45.56 0.41 9.63 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -41.55 358.85 -7.70 -49.25 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -2.31 Total: 23.25 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -3.05 Total: -0.49 kcal Atomic # 7 Polarization: -14.57 SS G_CDS: 0.41 Total: -14.16 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -1.84 Total: -60.13 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 5.54 SS G_CDS: -5.02 Total: 0.52 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.33 Total: -1.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -41.55 -7.70 -49.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250359482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.234 kcal (2) G-P(sol) polarization free energy of solvation -41.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds