Wall clock time and date at job start Tue Mar 31 2020 23:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47265 * 18.80421 * 3 2 1 5 5 N 1.46908 * 109.47359 * 177.35577 * 4 3 2 6 6 C 1.46899 * 110.99638 * 58.65907 * 5 4 3 7 7 C 1.50703 * 109.47057 * 66.04715 * 6 5 4 8 8 H 1.08000 * 120.00256 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00019 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99972 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99991 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46797 * 60.00519 * 11 9 7 13 13 H 1.48505 * 109.47034 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47202 * 300.00494 * 11 9 7 15 15 C 1.46900 * 110.99860 * 294.70998 * 5 4 3 16 16 C 1.50702 * 109.47089 * 290.99315 * 15 5 4 17 17 C 1.38414 * 119.87416 * 103.56200 * 16 15 5 18 18 C 1.37912 * 120.18635 * 180.27685 * 17 16 15 19 19 C 1.39457 * 119.93389 * 359.49965 * 18 17 16 20 Xx 1.57003 * 120.11735 * 180.27251 * 19 18 17 21 20 O 1.42008 * 119.99988 * 180.23077 * 20 19 18 22 21 O 1.41995 * 120.00412 * 0.22758 * 20 19 18 23 22 C 1.39467 * 119.76139 * 0.49729 * 19 18 17 24 23 Cl 1.73605 * 120.09486 * 179.77193 * 23 19 18 25 24 C 1.38408 * 119.81425 * 359.75587 * 23 19 18 26 25 F 1.35093 * 119.97573 * 179.97438 * 25 23 19 27 26 H 1.09003 * 109.47603 * 258.80721 * 3 2 1 28 27 H 1.09000 * 109.47583 * 138.80449 * 3 2 1 29 28 H 1.09000 * 109.47043 * 57.35587 * 4 3 2 30 29 H 1.08995 * 109.47418 * 297.35589 * 4 3 2 31 30 H 1.09002 * 109.46967 * 186.04505 * 6 5 4 32 31 H 1.09002 * 109.47695 * 306.04504 * 6 5 4 33 32 H 0.97003 * 120.00319 * 179.97438 * 10 9 7 34 33 H 1.08998 * 109.47094 * 171.00125 * 15 5 4 35 34 H 1.08998 * 109.47470 * 50.99125 * 15 5 4 36 35 H 1.07998 * 119.91090 * 0.02562 * 17 16 15 37 36 H 1.08001 * 120.02979 * 179.74216 * 18 17 16 38 37 H 0.96698 * 114.00042 * 180.02562 * 21 20 19 39 38 H 0.96697 * 114.00439 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.3646 -0.4650 5 7 4.5863 -1.3439 -0.5256 6 6 5.1627 -1.0178 0.7856 7 6 4.8597 -2.1287 1.7578 8 1 4.2950 -2.9906 1.4342 9 6 5.3034 -2.0448 3.0606 10 7 5.9906 -0.9951 3.4549 11 14 4.9272 -3.4215 4.2658 12 1 5.5160 -4.6904 3.7673 13 1 5.5100 -3.0920 5.5914 14 1 3.4561 -3.5763 4.3970 15 6 5.0574 -0.4080 -1.5552 16 6 4.7131 -0.9473 -2.9197 17 6 3.6499 -0.4107 -3.6250 18 6 3.3256 -0.9032 -4.8717 19 6 4.0772 -1.9376 -5.4283 20 8 4.4798 -3.5539 -7.4125 21 8 2.6251 -1.9467 -7.5736 22 6 5.1481 -2.4764 -4.7156 23 17 6.0858 -3.7683 -5.3978 24 6 5.4613 -1.9780 -3.4629 25 9 6.4976 -2.4979 -2.7694 26 1 2.9713 0.2003 1.0081 27 1 2.9710 0.7741 -0.6768 28 1 2.7172 -1.5851 -1.4541 29 1 2.7949 -2.1323 0.2378 30 1 6.2424 -0.9035 0.6895 31 1 4.7299 -0.0867 1.1515 32 1 6.3024 -0.9359 4.3715 33 1 6.1379 -0.2910 -1.4729 34 1 4.5754 0.5595 -1.4148 35 1 3.0700 0.3931 -3.1961 36 1 2.4929 -0.4854 -5.4180 37 1 4.1825 -3.8303 -8.2901 38 1 2.4797 -2.3558 -8.4376 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250359482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:23 Heat of formation + Delta-G solvation = 79.662893 kcal Electronic energy + Delta-G solvation = -25209.113954 eV Core-core repulsion = 21113.926115 eV Total energy + Delta-G solvation = -4095.187839 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.085 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.16584 -40.81345 -39.30304 -37.58308 -37.40127 -36.36644 -33.09515 -32.10811 -31.79248 -31.16383 -30.57649 -29.84439 -26.72914 -26.01615 -24.08196 -23.27240 -21.57610 -19.72185 -18.74657 -18.28426 -17.89936 -17.66230 -17.32844 -17.07642 -16.48374 -15.86217 -15.69011 -15.41683 -15.20420 -14.69605 -14.61174 -14.29095 -14.22811 -13.94444 -13.87551 -13.73306 -13.51414 -13.33416 -13.27980 -13.06545 -12.90010 -12.83120 -12.65435 -12.57111 -12.28605 -12.07200 -11.73662 -11.61812 -11.37087 -10.23454 -10.05845 -9.75900 -9.38053 -9.19396 -9.09108 -9.06125 -8.19320 -4.51197 -2.12647 -0.49175 -0.40518 0.96128 1.28647 1.30621 1.53154 1.89740 1.93841 1.95208 1.99834 2.11293 2.65122 2.87308 3.17534 3.26935 3.41331 3.66744 3.70308 4.10428 4.14116 4.16179 4.19582 4.38044 4.45220 4.52699 4.59127 4.74315 4.76344 4.89256 4.93774 4.98395 5.04501 5.27258 5.28982 5.31858 5.57353 6.04500 6.14634 6.75420 7.14040 7.54270 7.81035 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.003632 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.737723 B = 7707.543865 C = 9128.690724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.238 3.762 3 C -0.066 4.066 4 C 0.044 3.956 5 N -0.541 5.541 6 C 0.086 3.914 7 C -0.085 4.085 8 H 0.144 0.856 9 C -0.066 4.066 10 N -0.626 5.626 11 Si 0.980 3.020 12 H -0.262 1.262 13 H -0.263 1.263 14 H -0.255 1.255 15 C 0.094 3.906 16 C -0.084 4.084 17 C -0.018 4.018 18 C -0.120 4.120 19 C 0.278 3.722 20 O -0.929 6.929 21 O -1.078 7.078 22 C -0.112 4.112 23 Cl -0.013 7.013 24 C 0.162 3.838 25 F -0.097 7.097 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.336 0.664 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.227 0.773 36 H 0.153 0.847 37 H 0.242 0.758 38 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 9.912 34.591 36.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.079 4.079 3 C -0.107 4.107 4 C -0.086 4.086 5 N -0.264 5.264 6 C -0.039 4.039 7 C -0.104 4.104 8 H 0.161 0.839 9 C -0.279 4.279 10 N -0.275 5.275 11 Si 0.801 3.199 12 H -0.186 1.186 13 H -0.186 1.186 14 H -0.178 1.178 15 C -0.032 4.032 16 C -0.086 4.086 17 C -0.035 4.035 18 C -0.138 4.138 19 C 0.260 3.740 20 O -0.744 6.744 21 O -0.900 6.900 22 C -0.141 4.141 23 Cl 0.016 6.984 24 C 0.141 3.859 25 F -0.074 7.074 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.244 0.756 36 H 0.170 0.830 37 H 0.070 0.930 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.033 9.837 35.840 37.825 hybrid contribution -0.276 -1.429 -2.243 2.674 sum 6.757 8.408 33.597 35.286 Atomic orbital electron populations 1.81341 1.15595 1.10594 1.11104 1.29609 0.95592 0.91449 0.91267 1.20390 0.79653 1.02620 1.08086 1.22406 0.87055 0.95478 1.03627 1.62133 1.06749 1.51415 1.06077 1.21325 1.00946 0.96421 0.85178 1.25541 0.94160 0.98821 0.91911 0.83876 1.26655 0.98394 1.01494 1.01347 1.69868 1.10405 1.23708 1.23526 0.84954 0.80698 0.77184 0.77072 1.18646 1.18627 1.17845 1.21266 1.04022 0.95050 0.82890 1.20413 0.94571 0.94097 0.99527 1.21560 0.95323 0.99176 0.87466 1.21750 1.01649 0.94313 0.96062 1.28588 0.93237 0.91571 0.60554 1.93523 1.75674 1.77136 1.28044 1.93466 1.88745 1.79194 1.28631 1.21689 0.97929 0.99603 0.94842 1.98422 1.69010 1.45907 1.85064 1.16818 0.88811 0.95069 0.85208 1.91596 1.54093 1.85367 1.76388 0.84260 0.83713 0.90369 0.88507 0.86976 0.88103 0.85030 0.86652 0.86567 0.75616 0.82963 0.92982 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.16 18.54 20.00 0.37 -10.78 16 2 C 0.24 2.87 15.43 89.44 1.38 4.25 16 3 C -0.07 -0.07 5.02 28.79 0.14 0.08 16 4 C 0.04 0.24 4.94 86.30 0.43 0.66 16 5 N -0.54 -3.12 4.67 -905.34 -4.23 -7.35 16 6 C 0.09 0.28 4.45 85.56 0.38 0.66 16 7 C -0.09 -0.49 8.53 25.60 0.22 -0.27 16 8 H 0.14 0.65 7.10 -2.91 -0.02 0.63 16 9 C -0.07 -0.49 5.46 84.65 0.46 -0.03 16 10 N -0.63 -5.43 13.29 21.45 0.28 -5.14 16 11 Si 0.98 8.08 29.54 68.60 2.03 10.11 16 12 H -0.26 -2.99 7.11 99.48 0.71 -2.28 16 13 H -0.26 -2.52 7.11 99.48 0.71 -1.81 16 14 H -0.25 -2.51 7.11 99.48 0.71 -1.80 16 15 C 0.09 0.46 4.65 85.56 0.40 0.86 16 16 C -0.08 -1.37 4.60 -19.77 -0.09 -1.46 16 17 C -0.02 -0.31 8.87 22.23 0.20 -0.11 16 18 C -0.12 -4.34 9.75 22.49 0.22 -4.12 16 19 C 0.28 14.34 9.79 22.86 0.22 14.56 16 20 O -0.93 -73.85 14.63 -127.47 -1.86 -75.71 16 21 O -1.08 -92.28 17.25 -127.47 -2.20 -94.48 16 22 C -0.11 -4.77 6.36 22.61 0.14 -4.62 16 23 Cl -0.01 -0.64 25.58 -2.72 -0.07 -0.71 16 24 C 0.16 4.43 7.21 22.37 0.16 4.59 16 25 F -0.10 -2.41 16.28 44.97 0.73 -1.68 16 26 H 0.14 -0.45 6.40 -2.39 -0.02 -0.47 16 27 H 0.15 -0.75 6.24 -2.39 -0.01 -0.76 16 28 H 0.08 0.73 6.64 -2.39 -0.02 0.72 16 29 H 0.10 0.49 6.89 -2.39 -0.02 0.47 16 30 H 0.11 0.49 7.89 -2.39 -0.02 0.47 16 31 H 0.10 -0.10 6.02 -2.39 -0.01 -0.12 16 32 H 0.34 2.36 8.31 -92.71 -0.77 1.59 16 33 H 0.12 0.43 7.77 -2.39 -0.02 0.42 16 34 H 0.12 -0.45 5.85 -2.39 -0.01 -0.47 16 35 H 0.23 1.01 8.00 -2.91 -0.02 0.98 16 36 H 0.15 6.23 7.77 -2.91 -0.02 6.21 16 37 H 0.24 19.86 8.90 -74.06 -0.66 19.20 16 38 H 0.23 20.20 8.90 -74.06 -0.66 19.54 16 Total: -1.00 -127.34 358.85 -0.85 -128.19 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -0.16 Total: 42.52 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 4.26 Total: 15.04 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: -3.57 Total: -23.28 kcal Atomic # 8 Polarization: -166.12 SS G_CDS: -4.06 Total: -170.19 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.73 Total: -1.68 kcal Atomic # 14 Polarization: 8.08 SS G_CDS: 2.03 Total: 10.11 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.07 Total: -0.71 kcal Total: -127.34 -0.85 -128.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250359482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.851 kcal (2) G-P(sol) polarization free energy of solvation -127.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -128.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds