Wall clock time and date at job start Tue Mar 31 2020 23:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38046 * 126.29271 * 2 1 4 4 C 1.47434 * 126.41120 * 359.97438 * 3 2 1 5 5 O 1.21598 * 120.00216 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99612 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99821 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47219 * 180.02562 * 7 6 4 9 9 C 1.41380 * 126.80347 * 94.99693 * 8 7 6 10 10 C 1.35451 * 103.98649 * 179.77327 * 9 8 7 11 11 C 1.50706 * 126.77668 * 180.22754 * 10 9 8 12 12 F 1.39899 * 109.47043 * 210.00652 * 11 10 9 13 13 F 1.39904 * 109.47003 * 330.00316 * 11 10 9 14 14 O 1.34041 * 106.44823 * 0.22995 * 10 9 8 15 15 N 1.20916 * 111.56681 * 359.97438 * 14 10 9 16 16 C 1.41291 * 107.17213 * 180.24535 * 3 2 1 17 17 N 1.30444 * 108.01849 * 359.61411 * 16 3 2 18 18 N 1.34259 * 126.29065 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75335 * 359.95541 * 18 2 1 20 20 C 1.50702 * 109.46706 * 90.00175 * 19 18 2 21 21 H 1.08001 * 119.99982 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00167 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99811 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00309 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47417 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47455 * 119.99909 * 24 22 20 27 27 H 1.48500 * 109.47399 * 240.00195 * 24 22 20 28 28 H 1.08999 * 109.47001 * 89.97047 * 1 2 3 29 29 H 1.08997 * 109.47492 * 209.97545 * 1 2 3 30 30 H 1.09000 * 109.47065 * 329.98061 * 1 2 3 31 31 H 0.97000 * 120.00150 * 0.02562 * 6 4 3 32 32 H 1.08999 * 109.46976 * 60.00603 * 7 6 4 33 33 H 1.08995 * 109.47274 * 300.00083 * 7 6 4 34 34 H 1.08002 * 128.00820 * 0.04548 * 9 8 7 35 35 H 1.08993 * 109.47140 * 90.00125 * 11 10 9 36 36 H 1.08001 * 125.98559 * 179.73840 * 16 3 2 37 37 H 1.08998 * 109.46941 * 209.99958 * 19 18 2 38 38 H 1.08997 * 109.47345 * 330.00435 * 19 18 2 39 39 H 0.96998 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.7999 3.5107 0.0001 7 6 2.3644 4.9095 -0.0010 8 6 3.5716 5.8115 -0.0007 9 6 4.1919 6.3968 -1.1283 10 6 5.2160 7.1119 -0.6043 11 6 6.2137 7.9483 -1.3634 12 9 7.4311 7.9616 -0.6743 13 9 6.4051 7.4037 -2.6378 14 8 5.1669 6.9287 0.7226 15 7 4.2517 6.2040 1.0377 16 6 3.6591 0.6499 -0.0058 17 7 3.6340 -0.6543 -0.0006 18 7 2.3017 -1.0822 -0.0005 19 6 1.8500 -2.4758 -0.0002 20 6 1.6943 -2.9536 -1.4210 21 1 1.9106 -2.2860 -2.2419 22 6 1.2768 -4.2433 -1.6728 23 7 1.0149 -5.0567 -0.6730 24 14 1.0845 -4.8358 -3.4337 25 1 1.4405 -3.7372 -4.3674 26 1 1.9840 -5.9941 -3.6674 27 1 -0.3232 -5.2472 -3.6667 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5141 31 1 3.7462 3.2974 0.0005 32 1 1.7649 5.1040 0.8882 33 1 1.7668 5.1033 -0.8917 34 1 3.9112 6.3001 -2.1667 35 1 5.8376 8.9671 -1.4564 36 1 4.5449 1.2677 -0.0113 37 1 2.5850 -3.0957 0.5132 38 1 0.8917 -2.5471 0.5142 39 1 0.7208 -5.9638 -0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928150708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:56 Heat of formation + Delta-G solvation = -3.915081 kcal Electronic energy + Delta-G solvation = -27897.590318 eV Core-core repulsion = 23288.164240 eV Total energy + Delta-G solvation = -4609.426077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.73075 -47.75584 -45.64089 -40.83210 -38.94941 -35.93608 -34.02429 -33.75658 -33.04372 -32.07569 -31.18332 -28.49127 -27.40104 -26.91037 -26.32868 -23.80195 -23.40522 -22.10027 -21.19876 -20.00060 -19.26166 -18.74748 -18.60123 -17.80847 -17.65338 -17.17219 -16.80369 -16.57059 -15.80281 -15.27758 -15.13793 -14.63576 -14.56557 -14.48543 -14.28284 -14.06953 -13.97524 -13.67819 -13.28999 -13.13815 -13.03834 -12.60406 -12.46119 -12.21752 -12.11945 -11.88919 -11.81119 -11.50728 -11.12379 -11.00761 -10.92486 -10.39622 -10.34392 -10.21606 -9.93640 -9.49666 -9.16420 -8.73311 -8.62335 -7.96672 -6.35544 -4.43371 0.59553 1.41872 1.92844 2.12148 2.75058 3.07852 3.15640 3.16945 3.23861 3.29759 3.36917 3.43624 3.61023 3.83741 3.99712 4.13005 4.22725 4.25486 4.52885 4.74966 4.97046 5.03819 5.15295 5.24106 5.31397 5.39732 5.56404 5.72082 5.88484 6.09589 6.29705 6.43739 6.53295 6.76437 6.88568 7.11869 7.52694 7.53737 7.57429 7.74574 7.75911 8.33251 8.47622 8.62351 9.23642 10.72764 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.002051 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.693478 B =13649.809888 C =14276.506525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.168 3.832 3 C -0.334 4.334 4 C 0.609 3.391 5 O -0.553 6.553 6 N -0.733 5.733 7 C 0.205 3.795 8 C 0.002 3.998 9 C -0.163 4.163 10 C -0.126 4.126 11 C 0.368 3.632 12 F -0.186 7.186 13 F -0.180 7.180 14 O 0.137 5.863 15 N -0.328 5.328 16 C 0.059 3.941 17 N -0.294 5.294 18 N -0.313 5.313 19 C 0.250 3.750 20 C -0.539 4.539 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.400 0.600 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.186 0.814 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.617 26.683 -0.698 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.030 3.970 3 C -0.349 4.349 4 C 0.400 3.600 5 O -0.431 6.431 6 N -0.387 5.387 7 C 0.080 3.920 8 C -0.156 4.156 9 C -0.185 4.185 10 C -0.191 4.191 11 C 0.313 3.687 12 F -0.167 7.167 13 F -0.161 7.161 14 O 0.061 5.939 15 N -0.025 5.025 16 C -0.129 4.129 17 N -0.114 5.114 18 N -0.090 5.090 19 C 0.133 3.867 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.234 0.766 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.203 0.797 35 H 0.163 0.837 36 H 0.191 0.809 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.273 25.147 0.676 25.926 hybrid contribution 0.092 0.080 -1.803 1.807 sum 6.366 25.226 -1.127 26.042 Atomic orbital electron populations 1.20579 0.86712 1.03843 1.03982 1.21481 0.94990 0.86482 0.94025 1.19585 0.93182 0.92199 1.29978 1.17275 0.84773 0.83780 0.74189 1.90704 1.16540 1.84345 1.51553 1.45671 1.10233 1.04379 1.78420 1.19405 0.89498 0.78591 1.04484 1.23698 1.00751 1.02681 0.88452 1.22597 0.95364 0.98464 1.02028 1.24981 1.02115 1.05852 0.86110 1.19491 0.78619 0.96122 0.74425 1.93088 1.46617 1.97487 1.79460 1.93098 1.95254 1.88462 1.39325 1.84945 1.38699 1.48840 1.21392 1.73951 0.98905 1.05854 1.23743 1.23708 0.96287 0.92658 1.00210 1.77150 0.98626 1.12216 1.23404 1.49389 1.02464 1.08345 1.48761 1.19878 0.96452 0.70844 0.99517 1.21278 1.47370 0.98150 0.90969 0.91603 1.24932 0.94453 0.95991 0.98341 1.69923 1.44534 1.07145 1.31072 0.86262 0.77971 0.78852 0.83396 1.19524 1.20559 1.20530 0.89749 0.90800 0.88805 0.76560 0.89409 0.88779 0.79688 0.83699 0.80897 0.92469 0.92492 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.57 36.01 0.34 -1.31 16 2 C 0.17 3.39 7.01 -81.60 -0.57 2.81 16 3 C -0.33 -6.04 6.13 -105.06 -0.64 -6.68 16 4 C 0.61 9.79 7.81 -12.51 -0.10 9.69 16 5 O -0.55 -10.05 14.84 5.28 0.08 -9.97 16 6 N -0.73 -8.86 5.54 -62.57 -0.35 -9.21 16 7 C 0.20 2.05 6.26 -5.20 -0.03 2.01 16 8 C 0.00 0.02 6.70 -82.10 -0.55 -0.53 16 9 C -0.16 -1.09 10.75 -39.38 -0.42 -1.51 16 10 C -0.13 -0.82 7.08 -35.30 -0.25 -1.07 16 11 C 0.37 1.53 5.84 36.01 0.21 1.74 16 12 F -0.19 -1.21 17.32 2.25 0.04 -1.17 16 13 F -0.18 -1.06 17.07 2.25 0.04 -1.02 16 14 O 0.14 1.21 11.20 17.17 0.19 1.40 16 15 N -0.33 -3.38 12.07 33.43 0.40 -2.98 16 16 C 0.06 1.02 11.50 -16.98 -0.20 0.83 16 17 N -0.29 -6.34 12.50 30.86 0.39 -5.96 16 18 N -0.31 -7.05 3.56 -57.78 -0.21 -7.26 16 19 C 0.25 6.21 5.97 -5.19 -0.03 6.18 16 20 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 21 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.51 13.29 55.43 0.74 -23.78 16 24 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.07 1.28 7.05 -51.93 -0.37 0.92 16 30 H 0.09 1.58 6.50 -51.93 -0.34 1.25 16 31 H 0.40 4.26 7.42 -40.82 -0.30 3.95 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.15 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.17 2.23 7.50 -52.49 -0.39 1.84 16 37 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -32.46 358.08 -4.81 -37.27 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.85 Total: 2.52 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.66 Total: -0.94 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.97 Total: -49.18 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.27 Total: -8.57 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.08 Total: -2.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.46 -4.81 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928150708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.357 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds