Wall clock time and date at job start Tue Mar 31 2020 23:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38046 * 126.29271 * 2 1 4 4 C 1.47434 * 126.41120 * 359.97438 * 3 2 1 5 5 O 1.21598 * 120.00216 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99612 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99821 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47219 * 180.02562 * 7 6 4 9 9 C 1.41380 * 126.80347 * 94.99693 * 8 7 6 10 10 C 1.35451 * 103.98649 * 179.77327 * 9 8 7 11 11 C 1.50706 * 126.77668 * 180.22754 * 10 9 8 12 12 F 1.39899 * 109.47043 * 210.00652 * 11 10 9 13 13 F 1.39904 * 109.47003 * 330.00316 * 11 10 9 14 14 O 1.34041 * 106.44823 * 0.22995 * 10 9 8 15 15 N 1.20916 * 111.56681 * 359.97438 * 14 10 9 16 16 C 1.41291 * 107.17213 * 180.24535 * 3 2 1 17 17 N 1.30444 * 108.01849 * 359.61411 * 16 3 2 18 18 N 1.34259 * 126.29065 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75335 * 359.95541 * 18 2 1 20 20 C 1.50702 * 109.46706 * 90.00175 * 19 18 2 21 21 H 1.08001 * 119.99982 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00167 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99811 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00309 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47417 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47455 * 119.99909 * 24 22 20 27 27 H 1.48500 * 109.47399 * 240.00195 * 24 22 20 28 28 H 1.08999 * 109.47001 * 89.97047 * 1 2 3 29 29 H 1.08997 * 109.47492 * 209.97545 * 1 2 3 30 30 H 1.09000 * 109.47065 * 329.98061 * 1 2 3 31 31 H 0.97000 * 120.00150 * 0.02562 * 6 4 3 32 32 H 1.08999 * 109.46976 * 60.00603 * 7 6 4 33 33 H 1.08995 * 109.47274 * 300.00083 * 7 6 4 34 34 H 1.08002 * 128.00820 * 0.04548 * 9 8 7 35 35 H 1.08993 * 109.47140 * 90.00125 * 11 10 9 36 36 H 1.08001 * 125.98559 * 179.73840 * 16 3 2 37 37 H 1.08998 * 109.46941 * 209.99958 * 19 18 2 38 38 H 1.08997 * 109.47345 * 330.00435 * 19 18 2 39 39 H 0.96998 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.7999 3.5107 0.0001 7 6 2.3644 4.9095 -0.0010 8 6 3.5716 5.8115 -0.0007 9 6 4.1919 6.3968 -1.1283 10 6 5.2160 7.1119 -0.6043 11 6 6.2137 7.9483 -1.3634 12 9 7.4311 7.9616 -0.6743 13 9 6.4051 7.4037 -2.6378 14 8 5.1669 6.9287 0.7226 15 7 4.2517 6.2040 1.0377 16 6 3.6591 0.6499 -0.0058 17 7 3.6340 -0.6543 -0.0006 18 7 2.3017 -1.0822 -0.0005 19 6 1.8500 -2.4758 -0.0002 20 6 1.6943 -2.9536 -1.4210 21 1 1.9106 -2.2860 -2.2419 22 6 1.2768 -4.2433 -1.6728 23 7 1.0149 -5.0567 -0.6730 24 14 1.0845 -4.8358 -3.4337 25 1 1.4405 -3.7372 -4.3674 26 1 1.9840 -5.9941 -3.6674 27 1 -0.3232 -5.2472 -3.6667 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5141 31 1 3.7462 3.2974 0.0005 32 1 1.7649 5.1040 0.8882 33 1 1.7668 5.1033 -0.8917 34 1 3.9112 6.3001 -2.1667 35 1 5.8376 8.9671 -1.4564 36 1 4.5449 1.2677 -0.0113 37 1 2.5850 -3.0957 0.5132 38 1 0.8917 -2.5471 0.5142 39 1 0.7208 -5.9638 -0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928150708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:55 Heat of formation + Delta-G solvation = -25.588027 kcal Electronic energy + Delta-G solvation = -27898.530127 eV Core-core repulsion = 23288.164240 eV Total energy + Delta-G solvation = -4610.365887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.11433 -48.15422 -46.27330 -42.35013 -40.21130 -36.83238 -35.83310 -34.67518 -33.89841 -33.59802 -32.75974 -29.81077 -28.60597 -27.89965 -27.48194 -25.34648 -24.37031 -23.42167 -21.86698 -21.36513 -20.61565 -19.39618 -19.24309 -18.87514 -18.42385 -18.19440 -18.10601 -17.24718 -16.92175 -16.79284 -16.50672 -16.18120 -15.70224 -15.43667 -15.08422 -14.95307 -14.66422 -14.47795 -14.45021 -14.22936 -14.11625 -13.94288 -13.78156 -13.68170 -13.57737 -13.10008 -12.97758 -12.72841 -12.71672 -12.45100 -12.33797 -11.84634 -11.82581 -11.62123 -10.90895 -10.81465 -10.77184 -10.29999 -10.25040 -9.49026 -8.38964 -6.55302 0.04876 0.64389 0.77407 1.28230 1.36092 1.38268 1.47373 1.49430 1.64964 2.30918 2.35572 2.48234 2.70421 2.85878 2.93404 3.08002 3.61311 3.66892 3.69692 3.71888 3.88386 3.96972 4.08464 4.19488 4.24900 4.46002 4.55289 4.57682 4.63582 4.78575 4.80040 4.88132 5.04985 5.15189 5.31724 5.48415 5.62386 5.73443 6.02238 6.46151 6.53802 6.80450 6.93148 7.15880 7.23746 8.69277 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.002051 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.693478 B =13649.809888 C =14276.506525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.148 3.852 3 C -0.332 4.332 4 C 0.612 3.388 5 O -0.575 6.575 6 N -0.716 5.716 7 C 0.206 3.794 8 C -0.004 4.004 9 C -0.160 4.160 10 C -0.120 4.120 11 C 0.369 3.631 12 F -0.200 7.200 13 F -0.189 7.189 14 O 0.129 5.871 15 N -0.357 5.357 16 C 0.078 3.922 17 N -0.336 5.336 18 N -0.337 5.337 19 C 0.266 3.734 20 C -0.554 4.554 21 H 0.052 0.948 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.973 3.027 25 H -0.272 1.272 26 H -0.274 1.274 27 H -0.268 1.268 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.409 0.591 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.209 0.791 35 H 0.197 0.803 36 H 0.220 0.780 37 H 0.031 0.969 38 H 0.052 0.948 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.164 28.850 -2.188 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.012 3.988 3 C -0.347 4.347 4 C 0.402 3.598 5 O -0.456 6.456 6 N -0.369 5.369 7 C 0.082 3.918 8 C -0.161 4.161 9 C -0.181 4.181 10 C -0.185 4.185 11 C 0.315 3.685 12 F -0.181 7.181 13 F -0.170 7.170 14 O 0.054 5.946 15 N -0.055 5.055 16 C -0.109 4.109 17 N -0.156 5.156 18 N -0.114 5.114 19 C 0.147 3.853 20 C -0.592 4.592 21 H 0.070 0.930 22 C -0.179 4.179 23 N -0.555 5.555 24 Si 0.797 3.203 25 H -0.196 1.196 26 H -0.199 1.199 27 H -0.193 1.193 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.245 0.755 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.226 0.774 35 H 0.213 0.787 36 H 0.237 0.763 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.848 27.353 -0.805 28.209 hybrid contribution -0.007 -0.436 -1.299 1.370 sum 6.842 26.917 -2.104 27.853 Atomic orbital electron populations 1.20574 0.85610 1.04132 1.04124 1.21998 0.96040 0.86602 0.94115 1.19886 0.93165 0.92976 1.28677 1.16990 0.84851 0.83566 0.74385 1.90695 1.17553 1.84538 1.52766 1.45501 1.10101 1.04719 1.76596 1.19466 0.90161 0.77263 1.04865 1.23617 1.00481 1.02843 0.89185 1.22844 0.94969 0.97816 1.02459 1.25473 1.02385 1.05422 0.85226 1.20099 0.77467 0.97693 0.73262 1.93060 1.47669 1.97565 1.79857 1.93082 1.95237 1.88850 1.39866 1.84909 1.38328 1.48698 1.22701 1.73958 0.99800 1.06883 1.24820 1.24427 0.97629 0.91657 0.97162 1.77100 0.98452 1.14357 1.25682 1.49125 1.03325 1.07843 1.51141 1.19395 0.95326 0.72272 0.98260 1.21409 1.47837 0.98477 0.91478 0.92954 1.25747 0.93840 0.95940 1.02337 1.70004 1.44892 1.07598 1.33013 0.85278 0.78450 0.78179 0.78414 1.19621 1.19943 1.19304 0.89605 0.91053 0.87836 0.75506 0.90150 0.87336 0.77436 0.78662 0.76325 0.95115 0.93015 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.57 71.24 0.68 -2.42 16 2 C 0.15 6.04 7.01 42.14 0.30 6.33 16 3 C -0.33 -11.67 6.13 -20.15 -0.12 -11.79 16 4 C 0.61 18.73 7.81 86.67 0.68 19.40 16 5 O -0.57 -20.20 14.84 -4.02 -0.06 -20.26 16 6 N -0.72 -15.74 5.54 -470.11 -2.60 -18.35 16 7 C 0.21 3.71 6.26 85.63 0.54 4.25 16 8 C 0.00 -0.06 6.70 43.57 0.29 0.23 16 9 C -0.16 -1.69 10.75 22.40 0.24 -1.45 16 10 C -0.12 -1.26 7.08 25.04 0.18 -1.08 16 11 C 0.37 1.97 5.84 71.24 0.42 2.38 16 12 F -0.20 -2.21 17.32 44.97 0.78 -1.43 16 13 F -0.19 -1.70 17.07 44.97 0.77 -0.93 16 14 O 0.13 2.06 11.20 71.63 0.80 2.86 16 15 N -0.36 -6.85 12.07 -49.54 -0.60 -7.44 16 16 C 0.08 2.62 11.50 85.65 0.99 3.61 16 17 N -0.34 -14.56 12.50 -56.28 -0.70 -15.27 16 18 N -0.34 -15.58 3.56 -336.71 -1.20 -16.78 16 19 C 0.27 13.74 5.97 85.63 0.51 14.25 16 20 C -0.55 -30.43 9.39 25.60 0.24 -30.19 16 21 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 22 C 0.02 1.22 5.46 84.65 0.46 1.68 16 23 N -0.92 -51.23 13.29 21.45 0.28 -50.94 16 24 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.07 2.55 7.05 -2.39 -0.02 2.53 16 30 H 0.10 3.48 6.50 -2.39 -0.02 3.46 16 31 H 0.41 7.58 7.42 -92.71 -0.69 6.89 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.20 -0.89 8.14 -2.39 -0.02 -0.91 16 36 H 0.22 4.94 7.50 -2.91 -0.02 4.92 16 37 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 2.67 7.02 -2.39 -0.02 2.65 16 39 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -71.59 358.08 5.33 -66.26 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.45 Total: 12.56 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.39 Total: 5.21 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.82 Total: -108.78 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.74 Total: -17.40 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 1.55 Total: -2.36 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -71.59 5.33 -66.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928150708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.669 kcal (2) G-P(sol) polarization free energy of solvation -71.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds