Wall clock time and date at job start Tue Mar 31 2020 23:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48502 * 109.46624 * 274.98803 * 3 2 1 5 5 H 1.48500 * 109.47043 * 34.98487 * 3 2 1 6 6 H 1.48490 * 109.47458 * 154.98798 * 3 2 1 7 7 C 1.38817 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00284 * 185.07632 * 7 2 1 9 9 N 1.36944 * 119.99623 * 5.07302 * 7 2 1 10 10 C 1.47666 * 134.45330 * 173.49587 * 9 7 2 11 11 C 1.53461 * 85.96993 * 155.71275 * 10 9 7 12 12 C 1.47671 * 134.45652 * 353.50174 * 9 7 2 13 13 C 1.52901 * 113.50333 * 137.68289 * 11 10 9 14 14 N 1.47344 * 108.08787 * 82.96306 * 13 11 10 15 15 C 1.34775 * 121.05128 * 228.39493 * 14 13 11 16 16 O 1.21281 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99766 * 179.97438 * 15 14 13 18 18 N 1.46503 * 109.47142 * 179.97438 * 17 15 14 19 19 C 1.35041 * 126.03581 * 124.71663 * 18 17 15 20 20 C 1.35375 * 107.72747 * 179.84238 * 19 18 17 21 21 Cl 1.73607 * 126.04651 * 180.18268 * 20 19 18 22 22 C 1.39929 * 107.90746 * 0.42047 * 20 19 18 23 23 N 1.30853 * 108.21319 * 359.73981 * 22 20 19 24 24 C 1.47221 * 117.82839 * 48.37389 * 14 13 11 25 25 C 1.53229 * 108.75575 * 307.80898 * 24 14 13 26 26 O 1.42487 * 113.76656 * 268.70606 * 11 10 9 27 27 H 0.96996 * 120.00018 * 359.97438 * 1 2 3 28 28 H 1.08996 * 113.79535 * 41.44914 * 10 9 7 29 29 H 1.09011 * 113.90002 * 269.98688 * 10 9 7 30 30 H 1.08995 * 113.79507 * 90.02717 * 12 9 7 31 31 H 1.09006 * 113.79131 * 318.54959 * 12 9 7 32 32 H 1.08995 * 109.74749 * 202.63088 * 13 11 10 33 33 H 1.09004 * 109.74226 * 323.30356 * 13 11 10 34 34 H 1.09000 * 109.47324 * 299.99864 * 17 15 14 35 35 H 1.08998 * 109.47166 * 60.00207 * 17 15 14 36 36 H 1.08000 * 126.13871 * 359.97438 * 19 18 17 37 37 H 1.07995 * 125.89650 * 179.76079 * 22 20 19 38 38 H 1.08998 * 109.57572 * 188.03362 * 24 14 13 39 39 H 1.09002 * 109.58791 * 67.59251 * 24 14 13 40 40 H 1.08999 * 109.49579 * 294.17057 * 25 24 14 41 41 H 1.08996 * 109.49518 * 174.09144 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0833 9 7 1.3296 -2.3858 -0.1038 10 6 1.7298 -3.7992 -0.2550 11 6 0.3716 -4.1384 0.3736 12 6 -0.0988 -2.7603 -0.1103 13 6 -0.3434 -5.3034 -0.3115 14 7 0.1966 -6.5589 0.2390 15 6 0.5877 -7.5620 -0.5717 16 8 0.4975 -7.4395 -1.7749 17 6 1.1372 -8.8358 0.0169 18 7 1.4869 -9.7618 -1.0632 19 6 2.6928 -10.3379 -1.2564 20 6 2.6028 -11.1242 -2.3547 21 17 3.8795 -12.0891 -3.0279 22 6 1.3002 -11.0175 -2.8546 23 7 0.6309 -10.2013 -2.0813 24 6 0.2951 -6.6813 1.7028 25 6 1.0489 -5.4643 2.2493 26 8 0.4115 -4.2674 1.7920 27 1 -0.4850 0.8400 0.0004 28 1 2.5828 -4.0830 0.3614 29 1 1.8276 -4.1220 -1.2916 30 1 -0.5458 -2.7724 -1.1044 31 1 -0.6988 -2.2187 0.6211 32 1 -1.4139 -5.2454 -0.1148 33 1 -0.1638 -5.2651 -1.3859 34 1 2.0269 -8.6102 0.6048 35 1 0.3844 -9.2940 0.6583 36 1 3.5710 -10.1982 -0.6435 37 1 0.9138 -11.5220 -3.7278 38 1 0.8375 -7.5918 1.9575 39 1 -0.7050 -6.7160 2.1348 40 1 2.0795 -5.4855 1.8951 41 1 1.0378 -5.4887 3.3389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053450683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:47 Heat of formation + Delta-G solvation = 81.824394 kcal Electronic energy + Delta-G solvation = -27367.276517 eV Core-core repulsion = 23313.365062 eV Total energy + Delta-G solvation = -4053.911454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63526 -40.48142 -38.83025 -36.66904 -36.36295 -34.64498 -33.67402 -32.28347 -30.47997 -30.14296 -28.67730 -27.44458 -25.72525 -25.17421 -23.46580 -22.34359 -21.52785 -21.44693 -19.56871 -18.94038 -17.85137 -17.53590 -16.84082 -16.26725 -16.04000 -15.75612 -15.19130 -14.80906 -14.76237 -14.57338 -14.48316 -14.27371 -13.86487 -13.68768 -13.47754 -13.40107 -12.94241 -12.57130 -12.40981 -12.10781 -11.97252 -11.65021 -11.44848 -11.24251 -10.95700 -10.86546 -10.81615 -10.75074 -10.38093 -10.19292 -9.96249 -9.73794 -9.60718 -9.36029 -8.84573 -8.71267 -8.45479 -6.90983 -5.80214 -3.11448 1.36421 1.61255 2.33942 2.36005 2.43973 2.73107 3.38761 3.43563 3.45789 3.92325 3.95883 4.19105 4.34763 4.41868 4.54116 4.65213 4.69508 4.75963 4.97730 5.06455 5.09959 5.13996 5.27977 5.29972 5.47362 5.61005 5.65732 5.71790 5.94918 6.06711 6.17269 6.24292 6.38529 6.43015 6.50985 6.89550 7.12845 7.15085 7.25722 7.46493 7.72628 7.91829 7.94878 9.01247 9.67751 10.54112 11.37864 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.002400 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.208120 B =11663.994367 C =12315.328603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.102 3.898 11 C 0.052 3.948 12 C 0.185 3.815 13 C 0.101 3.899 14 N -0.609 5.609 15 C 0.501 3.499 16 O -0.508 6.508 17 C 0.118 3.882 18 N -0.354 5.354 19 C 0.073 3.927 20 C -0.185 4.185 21 Cl -0.045 7.045 22 C 0.059 3.941 23 N -0.250 5.250 24 C 0.070 3.930 25 C 0.044 3.956 26 O -0.334 6.334 27 H 0.255 0.745 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.184 0.816 37 H 0.191 0.809 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -24.380 3.355 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.327 5.327 10 C -0.025 4.025 11 C 0.010 3.990 12 C 0.060 3.940 13 C -0.022 4.022 14 N -0.345 5.345 15 C 0.286 3.714 16 O -0.381 6.381 17 C -0.007 4.007 18 N -0.136 5.136 19 C -0.074 4.074 20 C -0.223 4.223 21 Cl -0.017 7.017 22 C -0.129 4.129 23 N -0.070 5.070 24 C -0.053 4.053 25 C -0.034 4.034 26 O -0.251 6.251 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.201 0.799 37 H 0.208 0.792 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.515 -23.215 3.128 23.474 hybrid contribution 1.576 0.248 -0.337 1.631 sum 3.092 -22.967 2.791 23.341 Atomic orbital electron populations 1.69807 1.05054 1.25513 1.56173 1.24808 0.95696 0.97536 1.02174 0.86107 0.78708 0.83485 0.77517 1.21589 1.21630 1.20584 1.18970 0.90676 0.81794 1.43554 0.90226 1.45740 1.01837 1.00496 1.84671 1.23039 0.94925 0.87330 0.97186 1.23836 0.97973 0.95915 0.81295 1.22153 0.88872 0.85022 0.97992 1.22348 0.98162 0.81180 1.00497 1.48223 1.63587 1.16163 1.06496 1.20331 0.79173 0.84455 0.87399 1.90810 1.53368 1.80015 1.13943 1.21622 1.04083 0.88093 0.86922 1.47855 1.08019 1.35312 1.22432 1.22212 0.90520 0.96062 0.98576 1.20737 0.92391 1.07868 1.01341 1.98327 1.49071 1.69721 1.84562 1.23933 0.91182 0.97540 1.00205 1.77656 1.16705 1.13826 0.98766 1.22540 1.02589 1.00008 0.80152 1.22883 0.95989 0.84692 0.99828 1.88070 1.78295 1.38795 1.19952 0.93516 0.93900 0.94181 0.93587 0.89975 0.90552 0.87931 0.85447 0.86373 0.79910 0.79194 0.89606 0.89867 0.92763 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 11.51 55.49 0.64 -26.60 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.31 10.70 -15.05 -0.16 -6.47 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.56 3.70 -180.33 -0.67 -16.23 16 10 C 0.10 2.11 8.08 -3.17 -0.03 2.09 16 11 C 0.05 0.96 1.21 -90.30 -0.11 0.85 16 12 C 0.19 4.33 6.81 -3.18 -0.02 4.31 16 13 C 0.10 1.55 5.78 -3.63 -0.02 1.53 16 14 N -0.61 -7.45 3.03 -172.35 -0.52 -7.97 16 15 C 0.50 6.38 7.74 -10.99 -0.09 6.29 16 16 O -0.51 -8.90 15.20 5.56 0.08 -8.81 16 17 C 0.12 0.95 5.36 -5.19 -0.03 0.92 16 18 N -0.35 -3.76 3.40 -62.51 -0.21 -3.98 16 19 C 0.07 0.65 11.43 -17.16 -0.20 0.46 16 20 C -0.18 -1.84 6.65 -39.97 -0.27 -2.10 16 21 Cl -0.04 -0.40 29.30 -51.86 -1.52 -1.92 16 22 C 0.06 0.64 12.02 -17.34 -0.21 0.43 16 23 N -0.25 -3.26 11.64 30.64 0.36 -2.90 16 24 C 0.07 0.61 6.51 -3.53 -0.02 0.58 16 25 C 0.04 0.51 6.88 37.28 0.26 0.77 16 26 O -0.33 -5.91 10.52 -35.23 -0.37 -6.28 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.04 0.86 7.27 -51.93 -0.38 0.48 16 29 H 0.04 0.84 7.94 -51.92 -0.41 0.43 16 30 H 0.05 1.07 8.09 -51.93 -0.42 0.65 16 31 H 0.08 2.13 7.37 -51.93 -0.38 1.75 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 34 H 0.13 0.55 7.62 -51.93 -0.40 0.15 16 35 H 0.12 0.66 7.99 -51.93 -0.41 0.24 16 36 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.09 0.38 6.04 -51.93 -0.31 0.07 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.64 7.19 -51.93 -0.37 0.27 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -37.05 356.97 -7.95 -45.00 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.11 Total: -2.30 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -0.98 Total: 9.41 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.41 Total: -57.68 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.29 Total: -15.10 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.05 -7.95 -45.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053450683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.826 kcal (2) G-P(sol) polarization free energy of solvation -37.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds