Wall clock time and date at job start Tue Mar 31 2020 22:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48504 * 109.46965 * 239.99907 * 3 2 1 5 5 H 1.48496 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47132 * 119.99793 * 3 2 1 7 7 C 1.38946 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00388 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00240 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99908 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00054 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47172 * 179.97438 * 12 10 9 14 14 C 1.35250 * 119.09336 * 265.00175 * 13 12 10 15 15 C 1.36086 * 122.36389 * 180.26484 * 14 13 12 16 16 C 1.48351 * 120.08504 * 179.71969 * 15 14 13 17 17 N 1.34077 * 126.67723 * 359.67911 * 16 15 14 18 18 N 1.28985 * 107.26410 * 179.84138 * 17 16 15 19 19 N 1.28734 * 108.95278 * 0.43316 * 18 17 16 20 20 H 0.96998 * 125.33615 * 179.75285 * 19 18 17 21 21 N 1.28866 * 109.32528 * 359.72507 * 19 18 17 22 22 C 1.42355 * 119.82882 * 359.51071 * 15 14 13 23 23 O 1.21949 * 121.14062 * 180.24637 * 22 15 14 24 24 C 1.47280 * 117.71147 * 0.41820 * 22 15 14 25 25 C 1.39536 * 121.36481 * 179.84463 * 24 22 15 26 26 C 1.36685 * 119.68673 * 179.97438 * 25 24 22 27 27 C 1.38816 * 120.52437 * 0.02562 * 26 25 24 28 28 C 1.37761 * 120.70934 * 359.97438 * 27 26 25 29 29 C 1.37705 * 119.08944 * 84.97408 * 13 12 10 30 30 H 0.97000 * 120.00187 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99274 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47084 * 59.99783 * 12 10 9 33 33 H 1.08996 * 109.46989 * 299.99485 * 12 10 9 34 34 H 1.08002 * 118.81480 * 359.97396 * 14 13 12 35 35 H 1.07999 * 120.15083 * 359.96226 * 25 24 22 36 36 H 1.08002 * 119.73765 * 180.02562 * 26 25 24 37 37 H 1.08003 * 119.64632 * 179.97438 * 27 26 25 38 38 H 1.08002 * 120.13044 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5577 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1960 -5.9764 0.0017 14 6 2.5460 -6.5432 -1.1754 15 6 3.4198 -7.5837 -1.2516 16 6 3.7635 -8.1711 -2.5697 17 7 3.2908 -7.7887 -3.7647 18 7 3.8376 -8.5472 -4.6532 19 7 4.6178 -9.3851 -4.0647 20 1 5.1452 -10.0676 -4.5085 21 7 4.5887 -9.1748 -2.7937 22 6 4.0066 -8.1040 -0.0635 23 8 4.7959 -9.0327 -0.1045 24 6 3.6249 -7.4846 1.2170 25 6 4.1512 -7.9363 2.4277 26 6 3.7735 -7.3359 3.5961 27 6 2.8706 -6.2815 3.5872 28 6 2.3393 -5.8203 2.4028 29 6 2.7103 -6.4168 1.2009 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6183 -4.9209 -0.8896 33 1 0.6163 -4.9205 0.8903 34 1 2.1129 -6.1592 -2.0872 35 1 4.8536 -8.7566 2.4415 36 1 4.1806 -7.6846 4.5337 37 1 2.5817 -5.8177 4.5188 38 1 1.6379 -4.9990 2.4067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:28 Heat of formation + Delta-G solvation = 86.552235 kcal Electronic energy + Delta-G solvation = -28399.224314 eV Core-core repulsion = 24244.410380 eV Total energy + Delta-G solvation = -4154.813934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.33613 -42.43061 -40.22973 -39.07832 -38.44786 -36.02926 -35.49501 -34.63245 -33.46748 -33.10819 -31.71115 -31.42287 -29.12194 -26.57077 -25.94693 -25.65439 -24.78162 -23.42432 -22.71907 -21.21597 -20.38443 -20.00410 -19.52605 -18.69171 -18.21505 -18.12805 -18.01177 -16.75311 -16.51628 -16.21274 -15.93439 -15.86524 -15.73166 -15.52833 -15.24069 -14.88529 -14.81739 -14.76749 -14.07015 -13.84418 -13.51209 -13.26836 -13.19736 -13.12377 -12.87556 -12.82287 -12.44515 -12.32572 -12.18400 -12.12987 -12.01553 -11.97677 -11.53831 -10.64207 -10.52053 -10.19825 -10.04840 -9.97536 -8.71417 -8.48043 -5.97010 -0.38607 -0.21963 0.21304 0.63304 1.17240 1.26899 1.38196 1.44765 1.52989 1.61309 1.94063 2.17555 2.29136 2.68747 2.89626 3.05881 3.15120 3.18386 3.42620 3.56722 3.75004 3.82603 3.97802 4.12352 4.24243 4.31049 4.34613 4.37273 4.42054 4.58774 4.64540 4.88869 4.92880 5.01857 5.38867 5.41434 5.49741 5.53993 5.69529 5.73806 5.95468 5.98094 6.54020 6.79721 7.09728 7.22742 7.48399 8.03191 8.66685 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.003511 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.837582 B = 7972.267239 C = 9913.624563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.983 3.017 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.555 5.555 10 C 0.418 3.582 11 O -0.623 6.623 12 C 0.083 3.917 13 N -0.456 5.456 14 C 0.261 3.739 15 C -0.260 4.260 16 C 0.244 3.756 17 N -0.301 5.301 18 N -0.057 5.057 19 N -0.209 5.209 20 H 0.491 0.509 21 N -0.294 5.294 22 C 0.423 3.577 23 O -0.515 6.515 24 C -0.210 4.210 25 C -0.048 4.048 26 C -0.145 4.145 27 C -0.053 4.053 28 C -0.166 4.166 29 C 0.181 3.819 30 H 0.279 0.721 31 H 0.402 0.598 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.193 0.807 35 H 0.138 0.862 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -14.614 2.348 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.203 4.203 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.191 5.191 10 C 0.204 3.796 11 O -0.510 6.510 12 C -0.041 4.041 13 N -0.140 5.140 14 C 0.124 3.876 15 C -0.272 4.272 16 C -0.036 4.036 17 N -0.174 5.174 18 N -0.052 5.052 19 N -0.059 5.059 20 H 0.350 0.650 21 N -0.147 5.147 22 C 0.311 3.689 23 O -0.399 6.399 24 C -0.213 4.213 25 C -0.066 4.066 26 C -0.164 4.164 27 C -0.072 4.072 28 C -0.186 4.186 29 C 0.080 3.920 30 H 0.089 0.911 31 H 0.237 0.763 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.209 0.791 35 H 0.156 0.844 36 H 0.181 0.819 37 H 0.183 0.817 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.117 -14.832 1.722 14.932 hybrid contribution 0.483 0.706 -0.200 0.879 sum 0.366 -14.126 1.522 14.213 Atomic orbital electron populations 1.69618 1.06511 1.29531 1.49301 1.25866 0.96408 1.01956 0.96022 0.85130 0.77942 0.77375 0.78812 1.20165 1.19531 1.19823 1.19532 0.92617 0.83813 1.50259 0.90509 1.41777 1.09584 1.04185 1.63593 1.20846 0.88364 0.86185 0.84158 1.90617 1.15767 1.87593 1.57053 1.22191 0.90129 0.81478 1.10330 1.42884 1.38717 1.28656 1.03713 1.21857 0.88595 0.87439 0.89745 1.17745 1.12751 1.07074 0.89680 1.22921 0.94399 0.92698 0.93542 1.75995 1.22653 1.21472 0.97313 1.78697 1.04041 1.00054 1.22395 1.47815 1.30198 1.25544 1.02377 0.65041 1.75270 1.22126 1.19259 0.98014 1.18440 0.80293 0.82515 0.87652 1.90668 1.32510 1.27633 1.89097 1.20280 1.03541 1.00850 0.96658 1.20976 0.96614 0.98368 0.90666 1.21239 0.99169 0.97159 0.98804 1.21585 0.93233 0.94153 0.98216 1.21108 1.04724 1.02160 0.90636 1.18134 0.93976 0.93690 0.86171 0.91106 0.76253 0.82383 0.83192 0.79062 0.84374 0.81924 0.81695 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.30 13.05 21.66 0.28 -44.02 16 2 C 0.00 -0.05 5.50 84.93 0.47 0.42 16 3 Si 0.98 40.02 29.55 68.60 2.03 42.04 16 4 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.33 -16.98 9.68 84.04 0.81 -16.17 16 8 H 0.08 4.29 7.16 -2.91 -0.02 4.27 16 9 N -0.55 -23.94 5.29 -307.00 -1.62 -25.56 16 10 C 0.42 16.32 7.64 87.66 0.67 16.99 16 11 O -0.62 -30.77 15.90 -3.06 -0.05 -30.82 16 12 C 0.08 2.04 5.45 85.63 0.47 2.51 16 13 N -0.46 -12.85 2.18 -519.74 -1.13 -13.98 16 14 C 0.26 7.54 9.84 83.67 0.82 8.36 16 15 C -0.26 -8.72 5.87 -20.06 -0.12 -8.84 16 16 C 0.24 8.12 7.90 137.33 1.09 9.20 16 17 N -0.30 -9.36 12.13 -52.23 -0.63 -9.99 16 18 N -0.06 -1.52 13.47 37.02 0.50 -1.02 16 19 N -0.21 -4.73 7.90 37.02 0.29 -4.43 16 20 H 0.49 5.76 8.96 -347.53 -3.12 2.64 16 21 N -0.29 -9.23 11.16 -52.18 -0.58 -9.82 16 22 C 0.42 15.26 6.97 25.67 0.18 15.44 16 23 O -0.52 -20.71 15.93 -5.15 -0.08 -20.79 16 24 C -0.21 -6.67 5.89 -20.01 -0.12 -6.78 16 25 C -0.05 -1.27 9.61 22.22 0.21 -1.05 16 26 C -0.15 -2.93 9.98 22.04 0.22 -2.71 16 27 C -0.05 -1.07 10.01 22.30 0.22 -0.85 16 28 C -0.17 -4.17 9.10 22.39 0.20 -3.96 16 29 C 0.18 5.33 6.37 39.03 0.25 5.58 16 30 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 31 H 0.40 15.89 7.90 -92.70 -0.73 15.15 16 32 H 0.16 2.68 7.87 -2.39 -0.02 2.66 16 33 H 0.15 2.70 6.43 -2.39 -0.02 2.68 16 34 H 0.19 4.61 7.60 -2.91 -0.02 4.59 16 35 H 0.14 3.52 7.78 -2.91 -0.02 3.49 16 36 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.14 3.28 6.19 -2.91 -0.02 3.27 16 Total: -1.00 -77.55 342.00 1.71 -75.84 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -2.66 Total: 24.41 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 5.38 Total: 18.14 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -2.90 Total: -108.82 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.13 Total: -51.61 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -77.55 1.71 -75.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.391 kcal (2) G-P(sol) polarization free energy of solvation -77.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds