Wall clock time and date at job start Tue Mar 31 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47670 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46770 * 119.99947 * 3 2 1 7 7 C 1.38812 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 157.94542 * 7 2 1 9 9 N 1.36935 * 120.00029 * 337.94615 * 7 2 1 10 10 C 1.46496 * 120.00168 * 324.92336 * 9 7 2 11 11 C 1.53003 * 109.46867 * 270.00096 * 10 9 7 12 12 N 1.46503 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00007 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00348 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00300 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.46963 * 179.97438 * 15 13 12 17 17 C 1.38242 * 120.00521 * 264.71904 * 16 15 13 18 18 C 1.38223 * 120.04630 * 179.77829 * 17 16 15 19 19 C 1.38261 * 120.06216 * 0.49959 * 18 17 16 20 20 C 1.38272 * 120.01038 * 359.75640 * 19 18 17 21 21 Cl 1.73607 * 120.02365 * 179.97438 * 20 19 18 22 22 C 1.38400 * 120.00921 * 85.00299 * 16 15 13 23 23 F 1.35109 * 120.02537 * 359.97438 * 22 16 15 24 24 C 1.46503 * 120.00127 * 144.92213 * 9 7 2 25 25 C 1.53004 * 117.49740 * 3.23544 * 24 9 7 26 26 C 1.52995 * 117.49870 * 294.57853 * 24 9 7 27 27 H 0.96995 * 119.99672 * 355.76210 * 1 2 3 28 28 H 1.08995 * 109.47211 * 29.99607 * 10 9 7 29 29 H 1.09000 * 109.47465 * 150.00134 * 10 9 7 30 30 H 1.09001 * 109.46980 * 299.99328 * 11 10 9 31 31 H 1.08994 * 109.47445 * 59.99804 * 11 10 9 32 32 H 0.96998 * 120.00121 * 0.02562 * 12 11 10 33 33 H 1.09005 * 109.46785 * 300.00180 * 15 13 12 34 34 H 1.09004 * 109.46719 * 60.00152 * 15 13 12 35 35 H 1.08003 * 119.97477 * 0.02562 * 17 16 15 36 36 H 1.08002 * 119.96984 * 180.25973 * 18 17 16 37 37 H 1.07997 * 119.99142 * 179.77058 * 19 18 17 38 38 H 1.08999 * 115.55313 * 148.90890 * 24 9 7 39 39 H 1.09001 * 117.49599 * 0.02562 * 25 24 9 40 40 H 1.09000 * 117.49619 * 145.02077 * 25 24 9 41 41 H 1.09002 * 117.50220 * 214.97803 * 26 24 9 42 42 H 1.09001 * 117.50083 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4455 -2.2815 1.5531 11 6 1.1885 -2.4679 2.8775 12 7 0.2333 -2.4040 3.9865 13 6 0.6641 -2.5439 5.2559 14 8 1.8424 -2.7232 5.4801 15 6 -0.3185 -2.4787 6.3967 16 6 0.4132 -2.6634 7.7010 17 6 0.4891 -3.9166 8.2797 18 6 1.1640 -4.0878 9.4737 19 6 1.7554 -3.0043 10.0966 20 6 1.6764 -1.7488 9.5227 21 17 2.4183 -0.3880 10.3049 22 6 1.0043 -1.5774 8.3229 23 9 0.9262 -0.3513 7.7607 24 6 1.7038 -3.6308 -0.1889 25 6 2.7655 -3.6430 -1.2906 26 6 1.2874 -3.8147 -1.6495 27 1 -0.4849 0.8377 0.0621 28 1 -0.0521 -1.3118 1.5491 29 1 -0.2970 -3.0714 1.4387 30 1 1.6860 -3.4377 2.8816 31 1 1.9309 -1.6781 2.9920 32 1 -0.7093 -2.2617 3.8072 33 1 -0.8159 -1.5087 6.3927 34 1 -1.0611 -3.2683 6.2821 35 1 0.0242 -4.7632 7.7963 36 1 1.2261 -5.0682 9.9226 37 1 2.2792 -3.1388 11.0314 38 1 1.6463 -4.5015 0.4643 39 1 3.2386 -2.6943 -1.5440 40 1 3.4061 -4.5219 -1.3624 41 1 0.9562 -4.8064 -1.9575 42 1 0.7875 -2.9790 -2.1394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663756650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:10 Heat of formation + Delta-G solvation = -34.752190 kcal Electronic energy + Delta-G solvation = -26484.171115 eV Core-core repulsion = 22405.284559 eV Total energy + Delta-G solvation = -4078.886556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07060 -40.99027 -39.82231 -38.82614 -37.63041 -36.30170 -34.98185 -33.97871 -32.64878 -31.42447 -29.98183 -28.27864 -26.22308 -23.90524 -23.74315 -23.06930 -22.78215 -21.61915 -21.34614 -18.82644 -18.50426 -17.88394 -17.82582 -17.41099 -17.27021 -16.78571 -16.68808 -16.38220 -16.15389 -15.70232 -15.47217 -14.77518 -14.62668 -14.59383 -14.42066 -14.30126 -14.00488 -13.77945 -13.44639 -13.21673 -12.93953 -12.68567 -12.66659 -12.50834 -12.49400 -12.41669 -12.14620 -11.98247 -11.91500 -11.68521 -11.38841 -11.06978 -10.89457 -10.51128 -10.03157 -9.87349 -9.71896 -8.59200 -7.86198 -5.49839 -0.03831 0.01058 0.94258 1.40728 1.44958 1.50280 1.64701 2.14316 2.44705 2.57056 3.06913 3.11985 3.38639 3.39654 3.55716 3.80763 3.93474 4.04405 4.17239 4.28153 4.29812 4.37375 4.40955 4.50040 4.51702 4.60891 4.68105 4.80432 4.90795 4.94062 4.94394 5.04032 5.16923 5.23472 5.29139 5.32560 5.47686 5.54127 5.65583 5.71183 5.75808 6.40331 6.61807 7.10066 7.29040 7.79590 8.27761 9.05190 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.002650 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.151861 B =10565.021473 C =11759.425371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.028 4.028 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.264 4.264 8 H 0.058 0.942 9 N -0.566 5.566 10 C 0.144 3.856 11 C 0.122 3.878 12 N -0.712 5.712 13 C 0.507 3.493 14 O -0.587 6.587 15 C -0.096 4.096 16 C -0.101 4.101 17 C -0.075 4.075 18 C -0.107 4.107 19 C -0.085 4.085 20 C -0.092 4.092 21 Cl -0.063 7.063 22 C 0.087 3.913 23 F -0.145 7.145 24 C 0.099 3.901 25 C -0.187 4.187 26 C -0.210 4.210 27 H 0.253 0.747 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.024 0.976 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.178 0.822 37 H 0.166 0.834 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -10.954 20.103 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.226 4.226 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.394 4.394 8 H 0.075 0.925 9 N -0.284 5.284 10 C 0.017 3.983 11 C -0.004 4.004 12 N -0.364 5.364 13 C 0.294 3.706 14 O -0.467 6.467 15 C -0.135 4.135 16 C -0.102 4.102 17 C -0.092 4.092 18 C -0.125 4.125 19 C -0.104 4.104 20 C -0.119 4.119 21 Cl -0.034 7.034 22 C 0.067 3.933 23 F -0.123 7.123 24 C -0.008 4.008 25 C -0.225 4.225 26 C -0.251 4.251 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.251 0.749 33 H 0.134 0.866 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.402 -10.737 20.217 23.142 hybrid contribution 0.350 2.075 -0.547 2.174 sum -3.052 -8.662 19.670 21.708 Atomic orbital electron populations 1.70103 1.06181 1.26439 1.52153 1.25613 0.95663 1.00825 1.00511 0.85713 0.78287 0.80678 0.78059 1.20076 1.21373 1.21534 1.19168 0.94336 0.86785 1.39150 0.92474 1.43428 1.49431 1.02181 1.33328 1.20973 0.90938 1.02783 0.83623 1.21768 0.92330 0.99193 0.87153 1.45908 1.12413 1.72643 1.05399 1.21125 0.89454 0.75519 0.84468 1.90694 1.19997 1.50877 1.85129 1.20693 0.97301 1.08071 0.87429 1.19583 1.00814 0.93119 0.96691 1.21481 0.97082 0.95456 0.95231 1.21621 0.95929 1.00087 0.94837 1.21363 0.98832 0.88998 1.01171 1.21220 1.03484 0.91828 0.95375 1.98373 1.81094 1.44301 1.79641 1.17687 1.01608 0.80995 0.92996 1.91484 1.94555 1.41439 1.84847 1.21540 1.01883 0.89419 0.87992 1.23056 0.92070 1.02247 1.05101 1.23267 0.97451 1.01132 1.03256 0.93746 0.90173 0.93155 0.93329 0.95778 0.74917 0.86627 0.82670 0.81388 0.80420 0.81645 0.86923 0.90895 0.87161 0.87714 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.36 11.33 21.65 0.25 -50.11 16 2 C -0.03 -1.52 4.96 84.86 0.42 -1.10 16 3 Si 0.94 44.85 29.61 68.60 2.03 46.88 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.26 -14.18 8.63 84.03 0.73 -13.46 16 8 H 0.06 3.12 6.55 -2.91 -0.02 3.10 16 9 N -0.57 -27.13 2.78 -678.05 -1.88 -29.01 16 10 C 0.14 6.20 5.45 86.38 0.47 6.67 16 11 C 0.12 4.87 6.00 86.38 0.52 5.39 16 12 N -0.71 -22.03 5.56 -463.05 -2.57 -24.60 16 13 C 0.51 15.67 7.82 87.66 0.69 16.36 16 14 O -0.59 -23.84 16.03 -3.03 -0.05 -23.89 16 15 C -0.10 -1.91 5.61 29.10 0.16 -1.75 16 16 C -0.10 -2.21 4.38 -19.83 -0.09 -2.30 16 17 C -0.07 -1.14 9.68 22.27 0.22 -0.93 16 18 C -0.11 -1.33 10.04 22.27 0.22 -1.11 16 19 C -0.09 -1.36 9.83 22.28 0.22 -1.14 16 20 C -0.09 -2.13 6.33 22.36 0.14 -1.99 16 21 Cl -0.06 -1.48 28.62 -2.72 -0.08 -1.55 16 22 C 0.09 2.34 7.22 22.39 0.16 2.50 16 23 F -0.14 -4.59 16.14 44.97 0.73 -3.87 16 24 C 0.10 4.03 6.56 44.99 0.30 4.32 16 25 C -0.19 -7.01 9.80 30.62 0.30 -6.71 16 26 C -0.21 -8.06 10.36 30.62 0.32 -7.74 16 27 H 0.25 13.69 8.32 -92.71 -0.77 12.92 16 28 H 0.08 3.95 5.36 -2.39 -0.01 3.94 16 29 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 31 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 10.11 8.47 -92.71 -0.79 9.33 16 33 H 0.12 2.15 7.79 -2.38 -0.02 2.13 16 34 H 0.16 1.66 8.05 -2.38 -0.02 1.65 16 35 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.18 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 39 H 0.07 3.11 6.37 -2.39 -0.02 3.10 16 40 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.06 2.60 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -72.46 376.05 3.46 -69.00 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.27 Total: 20.14 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 4.77 Total: -2.99 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.21 Total: -103.73 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.73 Total: -3.87 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.55 kcal Total: -72.46 3.46 -69.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663756650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.248 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds