Wall clock time and date at job start Tue Mar 31 2020 23:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 N 1.32609 * 125.19008 * 90.02168 * 19 18 17 21 21 C 1.32818 * 109.75835 * 179.97438 * 20 19 18 22 22 N 1.33819 * 132.50377 * 180.02562 * 21 20 19 23 23 C 1.31349 * 120.86628 * 179.97438 * 22 21 20 24 24 C 1.40042 * 120.31130 * 0.02562 * 23 22 21 25 25 C 1.35777 * 119.24248 * 359.97438 * 24 23 22 26 26 N 1.35979 * 119.01762 * 0.02562 * 25 24 23 27 27 N 1.31186 * 125.18098 * 269.71280 * 19 18 17 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 1.08003 * 119.84657 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.37828 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.48756 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 7 7.3222 -1.3280 -0.6011 21 6 8.6196 -1.2172 -0.8629 22 7 9.7000 -1.1680 -0.0748 23 6 10.9037 -1.0541 -0.5879 24 6 11.0765 -0.9814 -1.9757 25 6 9.9862 -1.0304 -2.7833 26 7 8.7537 -1.1486 -2.2212 27 7 7.4593 -1.2315 -2.7506 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 11.7643 -1.0156 0.0636 39 1 12.0659 -0.8881 -2.3988 40 1 10.0962 -0.9764 -3.8564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424252913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:01 Heat of formation + Delta-G solvation = 75.708722 kcal Electronic energy + Delta-G solvation = -27511.531323 eV Core-core repulsion = 23491.691131 eV Total energy + Delta-G solvation = -4019.840192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.20599 -39.24617 -36.72595 -36.13826 -35.37759 -35.27646 -34.65363 -32.55412 -31.55103 -30.97933 -29.05306 -27.19508 -25.48454 -25.12617 -24.92204 -23.95743 -21.40707 -20.75679 -18.99295 -18.74493 -18.44402 -17.31583 -17.00392 -16.84142 -16.50419 -16.30853 -15.85107 -15.10687 -14.97059 -14.34645 -13.98712 -13.67726 -13.47976 -13.36675 -13.13490 -13.02729 -12.87793 -12.68508 -12.35533 -11.97888 -11.78421 -11.61542 -11.52335 -11.35429 -11.18069 -10.93254 -10.78108 -10.43693 -10.38484 -10.33019 -10.18722 -10.03354 -9.99431 -9.44551 -9.16845 -9.14245 -8.42424 -7.95670 -6.03773 -4.11920 0.02877 0.33049 1.16625 1.54934 2.19512 2.92952 3.06964 3.31552 3.39000 3.43024 3.51103 3.58355 3.86062 4.10947 4.18119 4.40425 4.42901 4.64149 4.86587 4.96238 5.20939 5.27541 5.30507 5.49190 5.61908 5.76602 5.83448 5.92519 5.98358 6.18583 6.34887 6.68962 6.89717 6.90665 7.07101 7.10116 7.16986 7.51916 7.65993 7.67235 7.82615 8.09188 8.30232 8.90969 9.54758 11.01309 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.003753 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.933597 B = 7458.014553 C = 9216.149405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.287 1.287 12 N -0.988 5.988 13 C 0.103 3.897 14 S 2.785 3.215 15 O -0.994 6.994 16 O -0.975 6.975 17 N -1.123 6.123 18 C 0.217 3.783 19 C 0.276 3.724 20 N -0.500 5.500 21 C 0.438 3.562 22 N -0.449 5.449 23 C 0.204 3.796 24 C -0.225 4.225 25 C 0.172 3.828 26 N -0.329 5.329 27 N -0.316 5.316 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.416 0.584 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.956 -5.521 -10.024 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.564 4.564 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.213 1.213 12 N -0.831 5.831 13 C -0.043 4.043 14 S 2.794 3.206 15 O -0.978 6.978 16 O -0.959 6.959 17 N -0.881 5.881 18 C 0.088 3.912 19 C -0.007 4.007 20 N -0.232 5.232 21 C 0.077 3.923 22 N -0.163 5.163 23 C 0.017 3.983 24 C -0.250 4.250 25 C 0.035 3.965 26 N -0.109 5.109 27 N -0.149 5.149 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.249 0.751 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.208 0.792 39 H 0.192 0.808 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 18.534 -5.170 -10.216 21.785 hybrid contribution 1.266 -0.253 0.632 1.437 sum 19.800 -5.423 -9.584 22.656 Atomic orbital electron populations 1.22054 0.97885 0.99686 1.00758 1.18754 0.91892 0.92776 0.80100 0.92330 1.21378 1.31777 1.13174 0.90099 0.91742 1.24910 0.94899 0.94933 0.99017 1.69884 1.36368 1.22619 1.23769 0.86540 0.79362 0.79338 0.82472 1.20736 1.19624 1.21260 1.57720 1.63999 1.21508 1.39879 1.21249 0.99101 0.81935 1.02030 1.01801 0.72214 0.73311 0.73323 1.93548 1.85784 1.76366 1.42052 1.93607 1.83212 1.32267 1.86839 1.56091 1.32629 1.13778 1.85624 1.19499 0.81298 0.85810 1.04628 1.24450 0.97937 0.93363 0.84902 1.70867 0.98031 1.27374 1.26879 1.22851 0.93530 0.96971 0.78932 1.68039 0.96692 1.16542 1.35053 1.23613 0.94099 0.86923 0.93653 1.21968 0.99816 1.08487 0.94743 1.22183 0.80247 0.92426 1.01680 1.48921 1.06998 1.45404 1.09529 1.78643 0.84424 1.32219 1.19581 0.94825 0.88892 0.96902 0.92702 0.93652 0.93231 0.89955 0.75120 0.87707 0.87757 0.79243 0.80806 0.80000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.27 6.58 2.62 -69.09 -0.18 6.39 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.25 16 4 C -0.52 -13.62 7.99 -34.44 -0.28 -13.89 16 5 H 0.06 1.62 7.33 -52.49 -0.38 1.24 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.99 -20.37 3.12 -115.85 -0.36 -20.73 16 13 C 0.10 1.79 9.28 59.85 0.56 2.35 16 14 S 2.79 54.98 6.09 -107.50 -0.66 54.32 16 15 O -0.99 -20.07 16.68 -57.17 -0.95 -21.02 16 16 O -0.98 -22.49 16.70 -57.17 -0.95 -23.44 16 17 N -1.12 -19.13 6.05 -11.65 -0.07 -19.20 16 18 C 0.22 3.31 6.87 -5.19 -0.04 3.27 16 19 C 0.28 4.40 7.49 -157.01 -1.18 3.23 16 20 N -0.50 -8.68 11.25 -11.80 -0.13 -8.81 16 21 C 0.44 6.42 8.99 -323.15 -2.91 3.52 16 22 N -0.45 -5.40 10.48 -13.82 -0.14 -5.54 16 23 C 0.20 1.20 11.27 -17.08 -0.19 1.01 16 24 C -0.23 -0.83 10.06 -39.79 -0.40 -1.23 16 25 C 0.17 1.14 11.32 -16.59 -0.19 0.95 16 26 N -0.33 -4.05 3.91 -13.84 -0.05 -4.11 16 27 N -0.32 -4.67 12.78 32.39 0.41 -4.25 16 28 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 34 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 35 H 0.42 6.88 8.64 -34.47 -0.30 6.58 16 36 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.10 1.41 7.75 -51.93 -0.40 1.01 16 38 H 0.19 0.27 8.06 -52.48 -0.42 -0.16 16 39 H 0.17 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -37.54 355.50 -11.11 -48.65 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.60 Total: 2.86 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -4.56 Total: 4.13 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: 0.28 Total: -86.85 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.91 Total: -44.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.66 Total: 54.32 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.54 -11.11 -48.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424252913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.356 kcal (2) G-P(sol) polarization free energy of solvation -37.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds