Wall clock time and date at job start Tue Mar 31 2020 23:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21287 * 120.00207 * 2 1 4 4 N 1.34775 * 120.00167 * 180.02562 * 2 1 3 5 5 C 1.39451 * 120.00027 * 185.38462 * 4 2 1 6 6 C 1.39129 * 119.92557 * 34.79106 * 5 4 2 7 7 C 1.37660 * 120.07743 * 179.97438 * 6 5 4 8 8 C 1.39760 * 119.92516 * 359.97438 * 7 6 5 9 9 C 1.47568 * 120.08006 * 180.02562 * 8 7 6 10 10 O 1.21609 * 119.99650 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00292 * 179.97438 * 9 8 7 12 12 C 1.39916 * 119.99686 * 184.37188 * 11 9 8 13 13 C 1.38942 * 120.00813 * 324.66114 * 12 11 9 14 14 C 1.37990 * 119.99431 * 179.74074 * 13 12 11 15 15 C 1.38909 * 120.00709 * 0.53486 * 14 13 12 16 16 O 1.35780 * 119.99865 * 179.70275 * 15 14 13 17 17 C 1.34814 * 116.99665 * 185.28317 * 16 15 14 18 18 H 1.07993 * 120.00659 * 354.97301 * 17 16 15 19 19 C 1.38634 * 119.99674 * 174.96665 * 17 16 15 20 20 N 1.31572 * 120.00006 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46826 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47269 * 120.00438 * 21 19 17 24 24 H 1.48498 * 109.46908 * 240.00511 * 21 19 17 25 25 C 1.38918 * 120.00728 * 359.71929 * 15 14 13 26 26 C 1.38001 * 119.99994 * 0.02562 * 25 15 14 27 27 C 1.39763 * 119.84847 * 0.27594 * 8 7 6 28 28 C 1.37667 * 119.92596 * 359.46800 * 27 8 7 29 29 H 1.09002 * 109.46970 * 269.99517 * 1 2 3 30 30 H 1.09001 * 109.47546 * 29.99444 * 1 2 3 31 31 H 1.09001 * 109.47408 * 150.00011 * 1 2 3 32 32 H 0.96999 * 120.00198 * 5.39056 * 4 2 1 33 33 H 1.08001 * 119.96142 * 359.97438 * 6 5 4 34 34 H 1.08006 * 120.04416 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99795 * 4.65572 * 11 9 8 36 36 H 1.07999 * 119.99846 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.99995 * 180.25023 * 14 13 12 38 38 H 0.97002 * 120.00037 * 179.97438 * 20 19 17 39 39 H 1.08000 * 119.99955 * 180.02562 * 25 15 14 40 40 H 1.07993 * 120.00104 * 179.97438 * 26 25 15 41 41 H 1.08003 * 120.03733 * 179.72439 * 27 8 7 42 42 H 1.07995 * 119.96944 * 180.25104 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5708 -1.1698 0.1128 6 6 4.2047 -0.2146 0.9011 7 6 5.5765 -0.2147 1.0156 8 6 6.3326 -1.1761 0.3393 9 6 7.8033 -1.1797 0.4601 10 8 8.3588 -0.3457 1.1491 11 7 8.5308 -2.1079 -0.1923 12 6 9.9162 -2.1688 -0.0060 13 6 10.6441 -1.0002 0.1816 14 6 12.0096 -1.0610 0.3707 15 6 12.6581 -2.2894 0.3625 16 8 14.0026 -2.3485 0.5425 17 6 14.5846 -3.5578 0.4147 18 1 13.9760 -4.4363 0.2598 19 6 15.9645 -3.6735 0.4820 20 7 16.7059 -2.6032 0.6711 21 14 16.7710 -5.3492 0.3056 22 1 15.7245 -6.3834 0.1047 23 1 17.6868 -5.3372 -0.8632 24 1 17.5427 -5.6590 1.5359 25 6 11.9313 -3.4574 0.1697 26 6 10.5649 -3.3974 -0.0142 27 6 5.6929 -2.1310 -0.4559 28 6 4.3203 -2.1285 -0.5618 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6991 -2.0053 -0.0798 33 1 3.6199 0.5278 1.4238 34 1 6.0681 0.5273 1.6273 35 1 8.0945 -2.7310 -0.7942 36 1 10.1406 -0.0448 0.1831 37 1 12.5749 -0.1530 0.5205 38 1 17.6714 -2.6842 0.7186 39 1 12.4355 -4.4125 0.1637 40 1 9.9999 -4.3054 -0.1645 41 1 6.2744 -2.8726 -0.9834 42 1 3.8250 -2.8685 -1.1729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:30 Heat of formation + Delta-G solvation = -33.910561 kcal Electronic energy + Delta-G solvation = -26890.417820 eV Core-core repulsion = 22801.627820 eV Total energy + Delta-G solvation = -4088.790000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07827 -40.22391 -38.92364 -38.18447 -36.45156 -35.22304 -34.04831 -32.21160 -31.44721 -31.30090 -30.20013 -29.46047 -27.63271 -25.38183 -24.11101 -23.27107 -22.26000 -21.49292 -21.10670 -20.14753 -18.57476 -18.08515 -17.76142 -17.45610 -17.13126 -16.34486 -15.89185 -15.44615 -14.99512 -14.81334 -14.63821 -14.54844 -14.27860 -13.98178 -13.78617 -13.61765 -13.52970 -13.33026 -13.14940 -12.86885 -12.75922 -12.63089 -12.45390 -11.83698 -11.60826 -11.56262 -11.51474 -11.05315 -10.82865 -10.71799 -10.45441 -10.43102 -9.77876 -9.55787 -9.33942 -9.24658 -8.72562 -8.56844 -8.19025 -6.92033 -6.43594 -4.01583 0.47840 1.05137 1.95129 2.17940 2.25225 2.49633 2.90046 3.13151 3.14159 3.19837 3.27781 3.68697 3.97500 4.12074 4.43805 4.51391 4.56542 4.58215 4.71114 4.76724 4.96909 5.04925 5.10761 5.13170 5.25876 5.34008 5.55980 5.64326 5.70617 5.81090 5.84966 6.02525 6.09244 6.16510 6.23300 6.31906 6.55082 6.78869 6.82933 6.86618 7.00412 7.17545 7.23563 7.42282 7.53014 7.71039 7.79622 8.00920 8.35801 9.01742 9.72471 10.74406 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.042942 B = 0.001681 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.886033 B =16655.436060 C =17184.325339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.675 5.675 5 C 0.165 3.835 6 C -0.129 4.129 7 C -0.038 4.038 8 C -0.142 4.142 9 C 0.550 3.450 10 O -0.523 6.523 11 N -0.655 5.655 12 C 0.033 3.967 13 C -0.066 4.066 14 C -0.179 4.179 15 C 0.148 3.852 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.220 4.220 26 C -0.089 4.089 27 C -0.067 4.067 28 C -0.153 4.153 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.413 0.587 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.400 0.600 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.269 0.731 39 H 0.132 0.868 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.427 -2.307 -3.460 32.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.394 6.394 4 N -0.321 5.321 5 C 0.070 3.930 6 C -0.149 4.149 7 C -0.058 4.058 8 C -0.146 4.146 9 C 0.339 3.661 10 O -0.400 6.400 11 N -0.299 5.299 12 C -0.059 4.059 13 C -0.086 4.086 14 C -0.199 4.199 15 C 0.094 3.906 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.240 4.240 26 C -0.109 4.109 27 C -0.086 4.086 28 C -0.173 4.173 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.249 0.751 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.236 0.764 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -31.272 -0.702 -2.865 31.411 hybrid contribution -0.145 -1.793 -0.485 1.864 sum -31.417 -2.495 -3.350 31.694 Atomic orbital electron populations 1.21900 0.90427 1.05420 1.05319 1.21090 0.91027 0.83096 0.75090 1.90796 1.70521 1.31131 1.46963 1.43619 1.05306 1.10175 1.73043 1.17911 0.82820 0.96854 0.95411 1.21068 0.94580 0.99997 0.99258 1.21188 0.92653 0.96121 0.95788 1.19981 0.93097 0.99036 1.02516 1.18203 0.86497 0.81727 0.79721 1.90791 1.72195 1.37274 1.39769 1.43086 1.06437 1.35157 1.45233 1.17242 0.81284 0.94108 1.13284 1.20763 0.92475 0.97303 0.98046 1.20156 0.93581 0.96044 1.10069 1.19430 0.85296 0.93209 0.92675 1.83993 1.14468 1.33198 1.76326 1.21367 0.90353 0.83534 1.51521 0.89003 1.25293 0.95244 0.99402 0.96631 1.70059 1.05816 1.28411 1.45328 0.85644 0.79308 0.80165 0.78266 1.19131 1.20162 1.20173 1.20968 0.93420 0.98996 1.10619 1.20476 0.94389 0.94843 1.01165 1.21108 0.94055 0.97019 0.96418 1.20779 0.93760 1.01165 1.01608 0.88255 0.88344 0.89836 0.75076 0.84416 0.84044 0.76445 0.85259 0.86077 0.92070 0.85081 0.87158 0.85065 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.38 10.31 36.00 0.37 -0.01 16 2 C 0.51 3.42 7.66 -10.99 -0.08 3.34 16 3 O -0.52 -6.04 14.87 5.55 0.08 -5.96 16 4 N -0.68 -3.62 5.31 -9.85 -0.05 -3.67 16 5 C 0.16 1.38 6.25 -83.73 -0.52 0.86 16 6 C -0.13 -1.35 8.62 -39.46 -0.34 -1.69 16 7 C -0.04 -0.45 9.58 -39.22 -0.38 -0.82 16 8 C -0.14 -1.69 5.88 -104.95 -0.62 -2.31 16 9 C 0.55 8.37 7.60 -12.46 -0.09 8.27 16 10 O -0.52 -9.94 13.79 5.27 0.07 -9.87 16 11 N -0.65 -9.31 5.28 -10.75 -0.06 -9.36 16 12 C 0.03 0.60 6.30 -83.65 -0.53 0.07 16 13 C -0.07 -1.34 8.68 -39.41 -0.34 -1.68 16 14 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 15 C 0.15 3.64 6.65 -39.08 -0.26 3.38 16 16 O -0.18 -5.09 9.76 0.00 0.00 -5.09 16 17 C -0.39 -10.94 9.48 30.88 0.29 -10.65 16 18 H 0.09 2.35 5.19 -52.49 -0.27 2.08 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 21 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.22 -4.75 9.16 -39.42 -0.36 -5.11 16 26 C -0.09 -1.60 9.96 -39.41 -0.39 -1.99 16 27 C -0.07 -0.57 9.53 -39.22 -0.37 -0.95 16 28 C -0.15 -1.10 9.94 -39.46 -0.39 -1.49 16 29 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.41 0.64 8.82 -40.82 -0.36 0.28 16 33 H 0.14 1.49 6.51 -52.49 -0.34 1.15 16 34 H 0.14 1.73 7.64 -52.48 -0.40 1.33 16 35 H 0.40 4.11 6.85 -40.82 -0.28 3.83 16 36 H 0.13 2.58 6.24 -52.49 -0.33 2.25 16 37 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.13 0.80 6.40 -52.48 -0.34 0.47 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -37.07 364.83 -7.52 -44.58 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.29 Total: 7.27 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -4.51 Total: -14.22 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.65 Total: -37.67 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.16 Total: -20.92 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.07 -7.52 -44.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.673 kcal (2) G-P(sol) polarization free energy of solvation -37.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds