Wall clock time and date at job start Tue Mar 31 2020 23:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35948 * 116.99718 * 2 1 4 4 C 1.38570 * 120.08542 * 0.28062 * 3 2 1 5 5 C 1.38242 * 120.01053 * 180.27167 * 4 3 2 6 6 C 1.50696 * 119.90658 * 179.72240 * 5 4 3 7 7 H 1.09004 * 109.19368 * 89.30663 * 6 5 4 8 8 N 1.46795 * 109.33470 * 208.88826 * 6 5 4 9 9 C 1.39033 * 118.41032 * 75.69437 * 8 6 5 10 10 C 1.38418 * 121.97305 * 209.53514 * 9 8 6 11 11 C 1.38186 * 119.64578 * 179.86792 * 10 9 8 12 12 C 1.38613 * 120.55810 * 0.29704 * 11 10 9 13 13 C 1.37959 * 120.52400 * 0.08264 * 12 11 10 14 14 C 1.39248 * 119.52080 * 359.95526 * 13 12 11 15 15 C 1.47416 * 121.76986 * 179.76611 * 14 13 12 16 16 O 1.21599 * 120.37872 * 346.40790 * 15 14 13 17 17 N 1.34921 * 119.24263 * 166.38889 * 15 14 13 18 18 C 1.38321 * 120.18212 * 359.44604 * 5 4 3 19 19 C 1.38150 * 120.17236 * 0.27553 * 18 5 4 20 20 C 1.38759 * 119.98733 * 0.02562 * 19 18 5 21 21 O 1.35800 * 120.09178 * 180.02562 * 20 19 18 22 22 C 1.34801 * 117.00070 * 354.40386 * 21 20 19 23 23 H 1.07998 * 120.00540 * 5.06552 * 22 21 20 24 24 C 1.38643 * 120.00395 * 185.06327 * 22 21 20 25 25 N 1.31574 * 119.99624 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00488 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47024 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47348 * 120.00336 * 26 24 22 29 29 H 1.48507 * 109.47277 * 239.99996 * 26 24 22 30 30 H 1.09000 * 109.47192 * 59.99839 * 1 2 3 31 31 H 1.09007 * 109.46957 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47348 * 299.99706 * 1 2 3 33 33 H 1.07993 * 119.99664 * 0.02562 * 4 3 2 34 34 H 0.96998 * 120.73190 * 255.92477 * 8 6 5 35 35 H 1.07993 * 120.17595 * 0.15517 * 10 9 8 36 36 H 1.07999 * 119.71555 * 180.27053 * 11 10 9 37 37 H 1.08005 * 119.73506 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.23658 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.39553 * 176.27494 * 17 15 14 40 40 H 1.08001 * 119.91380 * 180.25566 * 18 5 4 41 41 H 1.08002 * 120.00671 * 179.97438 * 19 18 5 42 42 H 0.96996 * 120.00062 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2931 2.3746 0.0059 5 6 1.9222 3.6055 0.0002 6 6 1.1010 4.8690 0.0003 7 1 0.8994 5.1654 1.0297 8 7 1.8503 5.9358 -0.6747 9 6 1.9324 5.9104 -2.0623 10 6 3.0188 6.4337 -2.7420 11 6 3.0517 6.3804 -4.1224 12 6 2.0041 5.8132 -4.8310 13 6 0.9104 5.2942 -4.1693 14 6 0.8638 5.3420 -2.7784 15 6 -0.2825 4.8070 -2.0214 16 8 -1.3217 4.5338 -2.5906 17 7 -0.1652 4.6237 -0.6899 18 6 3.3034 3.6806 0.0002 19 6 4.0615 2.5257 0.0001 20 6 3.4374 1.2864 -0.0005 21 8 4.1806 0.1498 0.0000 22 6 5.5161 0.2918 -0.1161 23 1 5.9559 1.2781 -0.1216 24 6 6.3252 -0.8284 -0.2283 25 7 5.7895 -2.0301 -0.2220 26 14 8.1759 -0.6317 -0.3884 27 1 8.5237 0.8118 -0.3699 28 1 8.8465 -1.3176 0.7452 29 1 8.6287 -1.2331 -1.6685 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2146 2.3195 0.0109 34 1 2.2803 6.6392 -0.1636 35 1 3.8383 6.8771 -2.1961 36 1 3.9008 6.7845 -4.6536 37 1 2.0439 5.7782 -5.9097 38 1 0.0966 4.8538 -4.7260 39 1 -0.9345 4.3235 -0.1810 40 1 3.7904 4.6446 -0.0001 41 1 5.1398 2.5875 -0.0003 42 1 6.3556 -2.8139 -0.3001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028910936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:21 Heat of formation + Delta-G solvation = -21.267619 kcal Electronic energy + Delta-G solvation = -29380.636455 eV Core-core repulsion = 25292.394694 eV Total energy + Delta-G solvation = -4088.241761 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.88187 -39.55818 -38.11299 -37.54465 -37.36521 -35.34327 -33.23680 -32.33928 -31.06795 -30.28791 -29.51999 -28.71711 -26.75817 -25.56823 -24.48181 -24.11932 -22.26052 -21.62692 -21.04936 -19.51365 -18.17274 -18.05102 -17.67695 -17.60067 -16.30383 -16.27640 -15.43895 -15.33711 -15.17351 -15.00474 -14.84825 -14.55737 -14.17658 -13.93157 -13.89635 -13.71846 -13.49877 -13.39058 -13.24513 -12.70503 -12.38547 -11.87390 -11.70815 -11.61193 -11.49028 -11.32789 -11.12075 -10.99944 -10.81203 -10.46914 -10.41186 -10.20848 -9.92153 -9.50742 -9.28072 -8.98263 -8.87742 -7.96283 -7.75915 -7.01932 -6.48008 -4.04393 0.93247 1.46834 1.99543 2.14942 2.84070 3.08312 3.10901 3.16907 3.18615 3.30256 3.89426 3.92106 3.99232 4.37036 4.56518 4.78604 4.95911 4.99357 5.02884 5.08018 5.15574 5.31049 5.37460 5.47875 5.48574 5.55728 5.65653 5.71581 5.85301 5.90801 6.07070 6.15561 6.20844 6.29636 6.47369 6.52443 6.56628 6.76180 6.80486 6.95355 6.95629 7.15167 7.20670 7.35343 7.49596 7.54415 7.91606 8.12602 8.24446 8.95858 9.65871 10.68997 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.003810 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.516300 B = 7347.559022 C = 8627.252004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.056 3.944 4 C -0.143 4.143 5 C -0.201 4.201 6 C 0.440 3.560 7 H 0.106 0.894 8 N -0.746 5.746 9 C 0.246 3.754 10 C -0.185 4.185 11 C -0.054 4.054 12 C -0.177 4.177 13 C -0.022 4.022 14 C -0.199 4.199 15 C 0.579 3.421 16 O -0.547 6.547 17 N -0.731 5.731 18 C -0.067 4.067 19 C -0.217 4.217 20 C 0.142 3.858 21 O -0.160 6.160 22 C -0.391 4.391 23 H 0.093 0.907 24 C 0.040 3.960 25 N -0.853 5.853 26 Si 0.942 3.058 27 H -0.266 1.266 28 H -0.275 1.275 29 H -0.275 1.275 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.411 0.589 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.405 0.595 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.678 16.714 -1.169 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.216 6.216 3 C 0.010 3.990 4 C -0.163 4.163 5 C -0.205 4.205 6 C 0.249 3.751 7 H 0.123 0.877 8 N -0.380 5.380 9 C 0.143 3.857 10 C -0.207 4.207 11 C -0.073 4.073 12 C -0.197 4.197 13 C -0.042 4.042 14 C -0.206 4.206 15 C 0.369 3.631 16 O -0.425 6.425 17 N -0.386 5.386 18 C -0.086 4.086 19 C -0.237 4.237 20 C 0.087 3.913 21 O -0.062 6.062 22 C -0.468 4.468 23 H 0.111 0.889 24 C -0.165 4.165 25 N -0.487 5.487 26 Si 0.766 3.234 27 H -0.190 1.190 28 H -0.201 1.201 29 H -0.201 1.201 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.248 0.752 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.242 0.758 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.052 15.818 -1.491 17.383 hybrid contribution 0.715 0.303 0.397 0.872 sum -6.337 16.121 -1.094 17.356 Atomic orbital electron populations 1.22890 0.80314 1.02994 1.00225 1.86241 1.19429 1.26325 1.89618 1.18157 0.89479 0.84501 1.06825 1.20380 0.98395 0.90984 1.06494 1.19591 0.93993 0.93126 1.13817 1.19105 0.79178 0.85068 0.91787 0.87686 1.44638 1.59797 1.30334 1.03254 1.17784 0.91253 0.92901 0.83762 1.20620 0.97423 1.07999 0.94643 1.21133 0.97518 0.95186 0.93469 1.20945 0.95038 1.03633 1.00063 1.20967 0.97272 0.93786 0.92143 1.19585 0.95404 1.11231 0.94371 1.18008 0.87281 0.76152 0.81664 1.90782 1.30641 1.52088 1.69001 1.46321 1.14250 1.69795 1.08222 1.20333 0.92206 0.97179 0.98869 1.20876 1.00538 0.90854 1.11392 1.18723 0.88288 0.87885 0.96443 1.84067 1.19387 1.25414 1.77370 1.21418 0.78524 0.94797 1.52014 0.88938 1.25327 1.00509 0.94244 0.96449 1.70081 1.36108 0.97677 1.44848 0.85641 0.80521 0.78863 0.78351 1.19036 1.20088 1.20069 0.93577 0.89009 0.93653 0.86495 0.75156 0.85449 0.85686 0.85745 0.85073 0.75817 0.87248 0.84845 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.30 -6.66 10.28 -34.01 -0.35 -7.01 16 3 C 0.06 1.21 6.70 -39.05 -0.26 0.95 16 4 C -0.14 -2.50 8.30 -39.46 -0.33 -2.83 16 5 C -0.20 -3.14 5.45 -104.59 -0.57 -3.71 16 6 C 0.44 5.06 4.27 -128.72 -0.55 4.51 16 7 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 8 N -0.75 -7.73 4.38 -56.09 -0.25 -7.98 16 9 C 0.25 3.08 6.20 -83.63 -0.52 2.56 16 10 C -0.18 -2.03 10.02 -39.53 -0.40 -2.43 16 11 C -0.05 -0.57 10.03 -39.46 -0.40 -0.96 16 12 C -0.18 -2.01 10.02 -39.55 -0.40 -2.41 16 13 C -0.02 -0.30 9.66 -39.31 -0.38 -0.68 16 14 C -0.20 -2.91 5.83 -104.88 -0.61 -3.52 16 15 C 0.58 9.00 7.88 -12.46 -0.10 8.91 16 16 O -0.55 -9.96 17.45 5.28 0.09 -9.86 16 17 N -0.73 -9.13 4.15 -59.08 -0.25 -9.38 16 18 C -0.07 -1.12 9.24 -39.58 -0.37 -1.48 16 19 C -0.22 -4.52 9.16 -39.42 -0.36 -4.88 16 20 C 0.14 3.44 6.66 -38.98 -0.26 3.18 16 21 O -0.16 -4.62 9.54 -14.46 -0.14 -4.76 16 22 C -0.39 -10.85 9.49 30.88 0.29 -10.55 16 23 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 24 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 25 N -0.85 -25.08 13.67 55.48 0.76 -24.32 16 26 Si 0.94 20.23 29.55 -169.99 -5.02 15.20 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 29 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 30 H 0.05 0.68 7.68 -51.93 -0.40 0.28 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 33 H 0.12 1.78 5.58 -52.49 -0.29 1.49 16 34 H 0.41 3.02 8.96 -40.82 -0.37 2.65 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.13 1.73 7.84 -52.49 -0.41 1.32 16 39 H 0.40 4.28 8.83 -40.82 -0.36 3.92 16 40 H 0.11 1.52 7.36 -52.49 -0.39 1.14 16 41 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -35.22 358.09 -8.49 -43.71 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.43 Total: 9.85 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -4.30 Total: -10.87 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.27 Total: -41.67 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.40 Total: -21.63 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.22 -8.49 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028910936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.445 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds