Wall clock time and date at job start Tue Mar 31 2020 23:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99609 * 2 1 4 4 O 1.20825 * 120.00214 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99408 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47474 * 60.00133 * 5 3 2 7 7 N 1.46505 * 109.47031 * 179.97438 * 5 3 2 8 8 C 1.34778 * 119.99513 * 275.00246 * 7 5 3 9 9 O 1.21548 * 120.00537 * 359.97438 * 8 7 5 10 10 C 1.47892 * 119.99761 * 179.97438 * 8 7 5 11 11 C 1.39922 * 120.02152 * 359.72413 * 10 8 7 12 12 C 1.38338 * 120.35412 * 179.71628 * 11 10 8 13 13 C 1.37745 * 120.40810 * 0.56124 * 12 11 10 14 14 C 1.40749 * 120.04566 * 359.71453 * 13 12 11 15 15 C 1.41435 * 120.17708 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99717 * 150.19032 * 15 14 13 17 17 C 1.39934 * 120.00597 * 330.17935 * 15 14 13 18 18 N 1.30822 * 120.00117 * 161.72501 * 17 15 14 19 19 Si 1.86802 * 119.99845 * 341.73528 * 17 15 14 20 20 H 1.48500 * 109.47110 * 95.40617 * 19 17 15 21 21 H 1.48498 * 109.47157 * 215.40708 * 19 17 15 22 22 H 1.48498 * 109.47279 * 335.40847 * 19 17 15 23 23 C 1.38993 * 120.02809 * 179.97438 * 10 8 7 24 24 C 1.50700 * 109.47247 * 299.99427 * 5 3 2 25 25 C 1.38231 * 119.61534 * 85.00378 * 24 5 3 26 26 C 1.38626 * 119.16113 * 179.72059 * 25 24 5 27 27 C 1.38671 * 118.41791 * 0.02562 * 26 25 24 28 28 C 1.38174 * 119.16689 * 359.97438 * 27 26 25 29 29 N 1.31850 * 119.61726 * 264.72937 * 24 5 3 30 30 H 1.08995 * 109.47198 * 60.00160 * 1 2 3 31 31 H 1.09001 * 109.47214 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47049 * 300.00053 * 1 2 3 33 33 H 0.96996 * 120.00562 * 94.99579 * 7 5 3 34 34 H 1.07999 * 119.82599 * 359.97438 * 11 10 8 35 35 H 1.07998 * 119.78950 * 180.25509 * 12 11 10 36 36 H 1.08007 * 119.97530 * 179.74117 * 13 12 11 37 37 H 0.96999 * 119.99979 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.19422 * 359.97438 * 23 10 8 39 39 H 1.08002 * 120.41893 * 359.74433 * 25 24 5 40 40 H 1.07998 * 120.78879 * 180.02562 * 26 25 24 41 41 H 1.08010 * 120.41478 * 180.02562 * 27 26 25 42 42 H 1.07999 * 119.62082 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9817 2.6798 -0.0011 8 6 4.0747 3.3545 -1.1641 9 8 3.8144 2.7973 -2.2125 10 6 4.4935 4.7729 -1.1646 11 6 4.7877 5.4164 0.0425 12 6 5.1857 6.7413 0.0495 13 6 5.2859 7.4454 -1.1301 14 6 4.9886 6.8166 -2.3536 15 6 5.0910 7.5368 -3.5665 16 1 5.3418 7.0206 -4.4815 17 6 4.8673 8.9180 -3.5813 18 7 5.2971 9.6397 -4.5842 19 14 3.9551 9.7315 -2.1686 20 1 4.9350 10.2671 -1.1897 21 1 3.1209 10.8428 -2.6926 22 1 3.0842 8.7314 -1.5004 23 6 4.5902 5.4691 -2.3637 24 6 4.1056 0.5916 1.2296 25 6 4.3064 -0.7760 1.2187 26 6 4.8084 -1.3940 2.3535 27 6 5.0904 -0.6100 3.4620 28 6 4.8638 0.7516 3.3989 29 7 4.3855 1.3059 2.3019 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 4.1897 3.1244 0.8355 34 1 4.7076 4.8747 0.9734 35 1 5.4145 7.2278 0.9862 36 1 5.5933 8.4807 -1.1161 37 1 5.1424 10.5972 -4.5942 38 1 4.3605 4.9773 -3.2974 39 1 4.0755 -1.3557 0.3372 40 1 4.9759 -2.4608 2.3738 41 1 5.4830 -1.0579 4.3630 42 1 5.0805 1.3691 4.2581 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081172309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:35 Heat of formation + Delta-G solvation = -76.294430 kcal Electronic energy + Delta-G solvation = -28464.030294 eV Core-core repulsion = 24373.402391 eV Total energy + Delta-G solvation = -4090.627903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.26789 -40.94984 -40.82233 -39.12585 -37.72608 -36.26954 -35.59363 -33.40891 -33.31027 -32.18754 -31.73249 -29.71044 -27.99380 -27.01472 -24.96667 -24.34580 -23.92450 -22.57033 -22.16357 -21.50766 -19.91501 -19.12537 -18.47212 -18.19696 -17.83274 -17.52905 -17.34895 -17.14167 -16.60500 -16.47077 -16.07148 -15.75209 -15.49531 -15.16448 -15.07392 -14.64393 -14.56130 -14.49609 -14.41421 -14.00363 -13.86747 -13.67537 -13.39123 -13.10719 -12.87628 -12.71545 -12.63440 -12.34593 -12.07789 -11.92941 -11.80052 -11.60220 -11.29651 -10.98724 -10.84470 -10.69597 -10.43472 -10.01557 -9.67010 -9.61593 -8.93399 -6.56867 -0.02610 0.10162 0.34729 0.71114 0.92537 1.23806 1.29312 1.40028 1.47658 1.88538 2.05119 2.11823 2.61845 2.80481 2.87180 3.41639 3.62688 3.67522 3.76304 4.03013 4.10552 4.18120 4.22362 4.22570 4.24528 4.26359 4.36859 4.54703 4.55472 4.61540 4.83330 4.85158 4.87712 4.98947 5.12719 5.14045 5.18522 5.26830 5.38761 5.60524 5.67701 5.73577 5.81501 6.05332 6.26330 6.38224 6.48751 6.62765 6.72201 6.88589 7.03531 8.15533 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.002848 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.934195 B = 9828.091634 C =10604.200568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.454 3.546 4 O -0.524 6.524 5 C 0.211 3.789 6 H 0.143 0.857 7 N -0.688 5.688 8 C 0.571 3.429 9 O -0.576 6.576 10 C -0.114 4.114 11 C -0.184 4.184 12 C -0.080 4.080 13 C -0.222 4.222 14 C 0.067 3.933 15 C -0.486 4.486 16 H 0.053 0.947 17 C 0.048 3.952 18 N -0.846 5.846 19 Si 0.964 3.036 20 H -0.243 1.243 21 H -0.276 1.276 22 H -0.256 1.256 23 C -0.162 4.162 24 C 0.092 3.908 25 C -0.143 4.143 26 C -0.068 4.068 27 C -0.153 4.153 28 C 0.090 3.910 29 N -0.506 5.506 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.060 0.940 33 H 0.424 0.576 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.110 0.890 37 H 0.296 0.704 38 H 0.093 0.907 39 H 0.158 0.842 40 H 0.175 0.825 41 H 0.173 0.827 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -22.898 20.821 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.295 3.705 4 O -0.412 6.412 5 C 0.102 3.898 6 H 0.160 0.840 7 N -0.342 5.342 8 C 0.361 3.639 9 O -0.456 6.456 10 C -0.117 4.117 11 C -0.203 4.203 12 C -0.098 4.098 13 C -0.242 4.242 14 C 0.064 3.936 15 C -0.515 4.515 16 H 0.071 0.929 17 C -0.167 4.167 18 N -0.472 5.472 19 Si 0.786 3.214 20 H -0.168 1.168 21 H -0.202 1.202 22 H -0.180 1.180 23 C -0.183 4.183 24 C -0.045 4.045 25 C -0.163 4.163 26 C -0.094 4.094 27 C -0.173 4.173 28 C -0.067 4.067 29 N -0.216 5.216 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.079 0.921 33 H 0.264 0.736 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.176 0.824 40 H 0.192 0.808 41 H 0.191 0.809 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.269 -21.879 19.875 29.739 hybrid contribution -0.427 0.223 -0.298 0.567 sum -3.696 -21.657 19.577 29.427 Atomic orbital electron populations 1.23606 0.74541 1.06158 1.02208 1.86461 1.25058 1.31355 1.83534 1.24304 0.92410 0.82029 0.71770 1.90696 1.67155 1.37728 1.45577 1.19195 0.86623 0.84253 0.99732 0.83958 1.45410 1.68026 1.10748 1.10063 1.18690 0.75237 0.86889 0.83067 1.90672 1.51670 1.70384 1.32913 1.19575 1.04784 0.91932 0.95379 1.20957 1.07859 0.95847 0.95650 1.21015 0.97125 0.93962 0.97688 1.21407 1.09218 1.00301 0.93242 1.17765 0.90252 0.92156 0.93401 1.19446 1.43935 0.93179 0.94972 0.92886 1.26845 0.93487 0.97060 0.99295 1.69711 1.35763 1.08974 1.32747 0.85523 0.79688 0.77910 0.78303 1.16795 1.20250 1.18015 1.21190 1.05325 0.95461 0.96278 1.20300 0.99900 0.92086 0.92206 1.22093 0.99021 0.93415 1.01771 1.22048 0.93631 1.02455 0.91268 1.22653 0.99156 0.94537 1.00910 1.23245 0.93937 0.94565 0.94926 1.67067 1.12195 1.41898 1.00451 0.92729 0.83815 0.92130 0.73558 0.84334 0.83375 0.87222 0.89354 0.88885 0.82395 0.80772 0.80919 0.80109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.35 -8.14 10.41 -51.41 -0.54 -8.68 16 3 C 0.45 13.92 7.28 71.24 0.52 14.44 16 4 O -0.52 -20.20 16.07 21.97 0.35 -19.85 16 5 C 0.21 5.93 2.73 43.50 0.12 6.05 16 6 H 0.14 3.85 7.54 -2.39 -0.02 3.83 16 7 N -0.69 -23.12 4.53 -452.51 -2.05 -25.17 16 8 C 0.57 24.28 7.60 86.80 0.66 24.94 16 9 O -0.58 -27.66 15.99 -3.87 -0.06 -27.72 16 10 C -0.11 -5.16 5.87 -20.13 -0.12 -5.28 16 11 C -0.18 -7.09 9.55 22.70 0.22 -6.87 16 12 C -0.08 -3.12 10.01 22.18 0.22 -2.90 16 13 C -0.22 -10.41 7.17 22.77 0.16 -10.24 16 14 C 0.07 3.58 5.10 -21.32 -0.11 3.47 16 15 C -0.49 -28.58 9.57 23.47 0.22 -28.35 16 16 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 17 C 0.05 2.64 5.40 85.25 0.46 3.10 16 18 N -0.85 -47.37 13.93 21.82 0.30 -47.06 16 19 Si 0.96 43.01 24.52 68.60 1.68 44.69 16 20 H -0.24 -9.80 6.71 99.48 0.67 -9.13 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.26 -11.88 6.86 99.48 0.68 -11.20 16 23 C -0.16 -8.51 9.34 23.01 0.21 -8.29 16 24 C 0.09 1.99 5.82 42.55 0.25 2.24 16 25 C -0.14 -2.06 9.69 22.36 0.22 -1.84 16 26 C -0.07 -0.60 10.18 22.47 0.23 -0.37 16 27 C -0.15 -1.29 10.11 22.36 0.23 -1.07 16 28 C 0.09 1.25 11.18 84.67 0.95 2.20 16 29 N -0.51 -10.85 9.04 -183.89 -1.66 -12.51 16 30 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.42 13.01 5.64 -92.71 -0.52 12.49 16 34 H 0.14 4.26 6.38 -2.91 -0.02 4.24 16 35 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.11 4.98 4.72 -2.91 -0.01 4.96 16 37 H 0.30 14.75 8.30 -92.71 -0.77 13.98 16 38 H 0.09 5.16 7.64 -2.91 -0.02 5.14 16 39 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.17 0.31 8.06 -2.91 -0.02 0.28 16 41 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 42 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -79.27 365.28 4.16 -75.11 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.49 Total: 28.28 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.63 Total: -7.09 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.41 Total: -84.74 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.24 Total: -56.25 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.68 Total: 44.69 kcal Total: -79.27 4.16 -75.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081172309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.184 kcal (2) G-P(sol) polarization free energy of solvation -79.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds