Wall clock time and date at job start Tue Mar 31 2020 23:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36735 * 119.99741 * 2 1 4 4 H 1.07997 * 119.99960 * 183.53295 * 3 2 1 5 5 C 1.39045 * 120.00183 * 3.53738 * 3 2 1 6 6 N 1.31366 * 120.00049 * 5.13478 * 5 3 2 7 7 Si 1.86795 * 119.99890 * 185.14216 * 5 3 2 8 8 H 1.48495 * 109.47474 * 89.99639 * 7 5 3 9 9 H 1.48504 * 109.47033 * 209.99571 * 7 5 3 10 10 H 1.48504 * 109.47355 * 329.99370 * 7 5 3 11 11 C 1.34770 * 119.99885 * 179.97438 * 2 1 3 12 12 O 1.21814 * 119.99893 * 185.23808 * 11 2 1 13 13 C 1.46306 * 120.00172 * 5.52093 * 11 2 1 14 14 C 1.36199 * 120.00530 * 85.58903 * 13 11 2 15 15 C 1.41492 * 119.99523 * 5.70878 * 14 13 11 16 16 C 1.38032 * 126.10693 * 185.51371 * 15 14 13 17 17 C 1.40386 * 106.52843 * 180.02562 * 16 15 14 18 18 C 1.35110 * 107.20988 * 359.97438 * 17 16 15 19 19 O 1.34154 * 109.03970 * 359.73431 * 18 17 16 20 20 N 1.39890 * 119.99700 * 265.58546 * 13 11 2 21 21 C 1.34771 * 119.99863 * 355.01616 * 20 13 11 22 22 O 1.21584 * 120.00605 * 5.81872 * 21 20 13 23 23 C 1.47813 * 119.99724 * 185.82028 * 21 20 13 24 24 C 1.39594 * 120.14528 * 359.73087 * 23 21 20 25 25 C 1.37954 * 119.84726 * 179.72244 * 24 23 21 26 26 C 1.38365 * 120.14871 * 0.55021 * 25 24 23 27 27 C 1.38357 * 120.29555 * 359.71856 * 26 25 24 28 28 C 1.37955 * 120.14659 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.46835 * 181.48034 * 1 2 3 30 30 H 1.09001 * 109.47115 * 301.48006 * 1 2 3 31 31 H 1.08998 * 109.47028 * 61.47982 * 1 2 3 32 32 H 0.97007 * 120.00497 * 185.00235 * 6 5 3 33 33 H 1.07994 * 120.00314 * 185.71800 * 14 13 11 34 34 H 1.07999 * 126.73900 * 359.97438 * 16 15 14 35 35 H 1.07992 * 126.39527 * 180.02562 * 17 16 15 36 36 H 1.07994 * 125.47561 * 180.02562 * 18 17 16 37 37 H 0.97004 * 119.99412 * 175.01869 * 20 13 11 38 38 H 1.08004 * 120.07466 * 359.97438 * 24 23 21 39 39 H 1.08005 * 119.92313 * 180.29401 * 25 24 23 40 40 H 1.07996 * 119.85191 * 179.70115 * 26 25 24 41 41 H 1.07993 * 119.92980 * 179.97438 * 27 26 25 42 42 H 1.08003 * 120.07405 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1842 0.0000 4 1 3.2271 1.1851 -0.0576 5 6 1.4554 2.3872 0.0743 6 7 0.1530 2.3853 0.2460 7 14 2.3760 4.0061 -0.0702 8 1 2.4370 4.4153 -1.4964 9 1 1.6684 5.0497 0.7143 10 1 3.7545 3.8404 0.4566 11 6 2.1388 -1.1672 0.0005 12 8 3.3532 -1.1693 0.0968 13 6 1.4124 -2.4313 -0.1208 14 6 1.0938 -2.9183 -1.3522 15 6 1.5686 -2.2669 -2.5151 16 6 1.2389 -2.5844 -3.8173 17 6 1.9374 -1.6838 -4.6370 18 6 2.6480 -0.8717 -3.8240 19 8 2.4196 -1.2204 -2.5489 20 7 1.0451 -3.1399 1.0280 21 6 1.4465 -2.7115 2.2411 22 8 2.0370 -1.6540 2.3478 23 6 1.1690 -3.5273 3.4421 24 6 0.4864 -4.7392 3.3240 25 6 0.2357 -5.4984 4.4482 26 6 0.6492 -5.0557 5.6922 27 6 1.3212 -3.8528 5.8170 28 6 1.5830 -3.0863 4.7002 29 1 -0.3633 -1.0273 0.0265 30 1 -0.3633 0.5367 0.8764 31 1 -0.3633 0.4907 -0.9029 32 1 -0.3403 3.2203 0.2252 33 1 0.4788 -3.8016 -1.4411 34 1 0.5746 -3.3716 -4.1419 35 1 1.9109 -1.6466 -5.7160 36 1 3.2921 -0.0679 -4.1484 37 1 0.5015 -3.9397 0.9514 38 1 0.1589 -5.0836 2.3541 39 1 -0.2881 -6.4386 4.3576 40 1 0.4461 -5.6516 6.5696 41 1 1.6409 -3.5126 6.7908 42 1 2.1074 -2.1472 4.7990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112632740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:57 Heat of formation + Delta-G solvation = 24.015908 kcal Electronic energy + Delta-G solvation = -29722.619532 eV Core-core repulsion = 25636.341411 eV Total energy + Delta-G solvation = -4086.278120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83640 -40.48680 -38.87992 -37.62435 -35.48432 -34.45092 -32.70795 -32.25944 -31.26920 -31.14296 -31.02230 -27.72164 -26.25216 -24.67085 -24.27137 -22.84149 -22.34485 -21.36065 -20.99307 -19.87957 -18.68793 -18.17591 -16.97686 -16.54987 -16.30914 -16.16594 -15.44109 -15.27893 -15.10941 -14.83117 -14.63765 -14.26976 -13.95561 -13.82132 -13.68063 -13.45461 -13.21229 -12.79291 -12.34039 -12.26091 -12.23586 -11.86982 -11.72553 -11.62946 -11.31086 -11.28172 -11.23309 -10.89620 -10.65455 -10.27380 -10.02103 -9.72511 -9.47061 -9.19411 -9.12802 -9.04095 -8.91885 -8.37749 -7.69321 -6.91416 -6.07851 -3.63039 0.66370 1.18357 1.38032 2.74606 2.91886 3.02802 3.25503 3.31686 3.38359 3.46992 3.63161 3.84423 4.18720 4.21421 4.52082 4.60305 4.72795 4.87821 5.03819 5.17065 5.30309 5.32440 5.38307 5.50018 5.54594 5.60698 5.67971 5.79167 5.96343 6.06124 6.12686 6.23052 6.26895 6.32177 6.39672 6.43256 6.62458 6.69222 6.86788 7.07476 7.18154 7.43904 7.52656 7.71136 7.78289 8.18256 8.27503 8.64592 9.33438 9.58501 10.12033 10.84378 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004455 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.515009 B = 6283.231233 C = 8370.662345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.421 5.421 3 C -0.276 4.276 4 H 0.103 0.897 5 C 0.022 3.978 6 N -0.891 5.891 7 Si 0.929 3.071 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.270 1.270 11 C 0.499 3.501 12 O -0.574 6.574 13 C 0.159 3.841 14 C -0.171 4.171 15 C 0.050 3.950 16 C -0.218 4.218 17 C -0.222 4.222 18 C -0.035 4.035 19 O -0.134 6.134 20 N -0.657 5.657 21 C 0.539 3.461 22 O -0.456 6.456 23 C -0.124 4.124 24 C -0.089 4.089 25 C -0.129 4.129 26 C -0.098 4.098 27 C -0.127 4.127 28 C -0.056 4.056 29 H 0.012 0.988 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.263 0.737 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.194 0.806 37 H 0.405 0.595 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 -15.259 3.019 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.139 5.139 3 C -0.404 4.404 4 H 0.121 0.879 5 C -0.178 4.178 6 N -0.533 5.533 7 Si 0.756 3.244 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.286 3.714 12 O -0.459 6.459 13 C 0.059 3.941 14 C -0.195 4.195 15 C -0.002 4.002 16 C -0.238 4.238 17 C -0.242 4.242 18 C -0.105 4.105 19 O -0.028 6.028 20 N -0.302 5.302 21 C 0.326 3.674 22 O -0.326 6.326 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.145 4.145 28 C -0.075 4.075 29 H 0.030 0.970 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.211 0.789 37 H 0.242 0.758 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.685 -14.144 3.632 15.060 hybrid contribution -0.368 0.221 -0.460 0.629 sum -4.053 -13.923 3.171 14.843 Atomic orbital electron populations 1.21784 0.80677 0.95623 1.04469 1.43202 1.05525 1.04123 1.61018 1.19712 0.93242 0.81718 1.45731 0.87933 1.25264 0.95879 0.99465 0.97220 1.70114 1.06238 1.27047 1.49952 0.85868 0.79439 0.81014 0.78098 1.20523 1.21025 1.19432 1.16668 0.87183 0.82065 0.85534 1.90682 1.13024 1.85848 1.56304 1.20772 0.93275 0.94250 0.85841 1.19468 1.09027 1.03660 0.87379 1.19397 0.95692 0.90659 0.94434 1.21888 1.06411 1.04296 0.91218 1.21515 1.02901 0.99647 1.00095 1.24107 1.03582 1.02004 0.80801 1.84445 1.50212 1.39618 1.28476 1.43609 1.52533 1.28928 1.05085 1.18559 0.79849 0.86156 0.82863 1.91039 1.36381 1.20614 1.84519 1.19892 1.03043 0.96118 0.93675 1.21312 0.96818 0.93436 0.99159 1.21077 1.01038 1.00138 0.92404 1.21371 0.96598 0.95994 0.97635 1.21181 0.99562 0.94999 0.98736 1.21392 0.95724 0.99640 0.90746 0.96993 0.89446 0.92815 0.92627 0.83728 0.83966 0.84083 0.78921 0.75789 0.85648 0.85376 0.85614 0.85202 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.96 8.79 59.85 0.53 3.49 16 2 N -0.42 -11.62 3.01 -123.84 -0.37 -11.99 16 3 C -0.28 -8.15 9.55 -15.07 -0.14 -8.29 16 4 H 0.10 3.20 7.18 -52.49 -0.38 2.82 16 5 C 0.02 0.61 5.44 -17.45 -0.09 0.52 16 6 N -0.89 -24.58 9.48 55.50 0.53 -24.05 16 7 Si 0.93 21.87 29.56 -169.99 -5.02 16.85 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.50 13.23 1.75 -13.02 -0.02 13.21 16 12 O -0.57 -17.47 15.92 -20.80 -0.33 -17.80 16 13 C 0.16 3.30 4.36 -81.67 -0.36 2.95 16 14 C -0.17 -3.05 9.73 -39.08 -0.38 -3.43 16 15 C 0.05 0.99 6.70 -38.42 -0.26 0.73 16 16 C -0.22 -3.63 10.91 -38.85 -0.42 -4.05 16 17 C -0.22 -3.60 10.87 -39.89 -0.43 -4.03 16 18 C -0.04 -0.65 12.06 29.62 0.36 -0.29 16 19 O -0.13 -3.05 8.07 -6.76 -0.05 -3.11 16 20 N -0.66 -10.93 5.35 -9.42 -0.05 -10.98 16 21 C 0.54 10.10 7.72 -12.35 -0.10 10.00 16 22 O -0.46 -11.18 13.55 -13.40 -0.18 -11.36 16 23 C -0.12 -1.77 5.87 -104.97 -0.62 -2.38 16 24 C -0.09 -0.92 9.54 -39.18 -0.37 -1.29 16 25 C -0.13 -1.11 10.03 -39.64 -0.40 -1.50 16 26 C -0.10 -0.84 10.04 -39.49 -0.40 -1.24 16 27 C -0.13 -1.30 10.03 -39.64 -0.40 -1.69 16 28 C -0.06 -0.76 9.60 -39.18 -0.38 -1.14 16 29 H 0.01 0.26 6.20 -51.93 -0.32 -0.07 16 30 H 0.09 2.35 6.53 -51.93 -0.34 2.01 16 31 H 0.05 1.39 7.52 -51.93 -0.39 1.00 16 32 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 33 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.19 2.95 8.06 -52.49 -0.42 2.53 16 37 H 0.41 4.60 6.76 -40.82 -0.28 4.32 16 38 H 0.13 0.95 6.42 -52.48 -0.34 0.62 16 39 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.14 2.06 7.65 -52.48 -0.40 1.66 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -38.23 362.22 -8.45 -46.68 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.54 Total: 8.76 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.88 Total: 1.55 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.10 Total: -47.03 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.57 Total: -32.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.23 -8.45 -46.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112632740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.700 kcal (2) G-P(sol) polarization free energy of solvation -38.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds