Wall clock time and date at job start Tue Mar 31 2020 23:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21290 * 120.00306 * 2 1 4 4 C 1.46864 * 119.99683 * 179.97438 * 2 1 3 5 5 C 1.40572 * 120.51114 * 179.97438 * 4 2 1 6 6 C 1.36852 * 118.45939 * 180.02562 * 5 4 2 7 7 C 1.39341 * 119.41092 * 359.97438 * 6 5 4 8 8 N 1.38864 * 119.49430 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99578 * 174.88870 * 8 7 6 10 10 O 1.21261 * 119.99726 * 5.11069 * 9 8 7 11 11 C 1.50695 * 119.99836 * 185.11516 * 9 8 7 12 12 C 1.50699 * 109.46977 * 179.97438 * 11 9 8 13 13 C 1.38318 * 119.96786 * 269.72269 * 12 11 9 14 14 C 1.38281 * 120.14004 * 179.76681 * 13 12 11 15 15 C 1.38118 * 120.06684 * 0.51305 * 14 13 12 16 16 C 1.38853 * 119.93361 * 359.74236 * 15 14 13 17 17 O 1.35748 * 120.07116 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00286 * 5.54705 * 17 16 15 19 19 H 1.07999 * 119.99607 * 354.94911 * 18 17 16 20 20 C 1.38649 * 120.00430 * 174.94566 * 18 17 16 21 21 N 1.31565 * 119.99863 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47185 * 90.00256 * 22 20 18 24 24 H 1.48497 * 109.47125 * 210.00272 * 22 20 18 25 25 H 1.48498 * 109.47124 * 330.00110 * 22 20 18 26 26 C 1.38081 * 119.96210 * 90.00171 * 12 11 9 27 27 N 1.32570 * 120.99978 * 359.97438 * 7 6 5 28 28 C 1.31602 * 121.68092 * 0.02562 * 27 7 6 29 29 H 1.08997 * 109.47140 * 270.00053 * 1 2 3 30 30 H 1.09003 * 109.47084 * 30.00098 * 1 2 3 31 31 H 1.08997 * 109.47381 * 149.99645 * 1 2 3 32 32 H 1.08005 * 120.76903 * 0.04066 * 5 4 2 33 33 H 1.07992 * 120.29228 * 179.97438 * 6 5 4 34 34 H 0.96999 * 120.00502 * 354.88210 * 8 7 6 35 35 H 1.09005 * 109.47030 * 299.99824 * 11 9 8 36 36 H 1.09001 * 109.47411 * 59.99745 * 11 9 8 37 37 H 1.08001 * 119.92955 * 0.02562 * 13 12 11 38 38 H 1.08003 * 119.96275 * 180.25351 * 14 13 12 39 39 H 1.08001 * 120.03502 * 179.72600 * 15 14 13 40 40 H 0.97001 * 119.99969 * 179.97438 * 21 20 18 41 41 H 1.07993 * 120.04043 * 359.95074 * 26 12 11 42 42 H 1.08008 * 119.76407 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6470 -1.2845 0.0000 6 6 4.2883 -2.4935 0.0001 7 6 3.5366 -3.6668 0.0012 8 7 4.1856 -4.8945 0.0017 9 6 3.4727 -6.0335 0.1068 10 8 2.2608 -5.9923 0.1074 11 6 4.1817 -7.3581 0.2235 12 6 3.1643 -8.4649 0.3274 13 6 2.7068 -8.8686 1.5687 14 6 1.7697 -9.8806 1.6679 15 6 1.2955 -10.4988 0.5275 16 6 1.7566 -10.0995 -0.7199 17 8 1.2928 -10.7055 -1.8425 18 6 0.3025 -11.6071 -1.6869 19 1 -0.0296 -11.8787 -0.6958 20 6 -0.2895 -12.1857 -2.7992 21 7 0.1154 -11.8552 -4.0066 22 14 -1.6620 -13.4343 -2.5836 23 1 -2.9706 -12.7325 -2.5607 24 1 -1.6367 -14.3977 -3.7133 25 1 -1.4699 -14.1652 -1.3053 26 6 2.6941 -9.0790 -0.8165 27 7 2.2115 -3.6288 0.0027 28 6 1.5528 -2.4895 0.0027 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 4.2078 -0.3615 -0.0001 33 1 5.3673 -2.5377 -0.0008 34 1 5.1519 -4.9324 -0.0736 35 1 4.8029 -7.5166 -0.6581 36 1 4.8092 -7.3570 1.1148 37 1 3.0792 -8.3896 2.4622 38 1 1.4114 -10.1908 2.6384 39 1 0.5669 -11.2922 0.6058 40 1 -0.2985 -12.2602 -4.7848 41 1 3.0544 -8.7660 -1.7853 42 1 0.4727 -2.4946 0.0044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131828824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:19 Heat of formation + Delta-G solvation = -20.899957 kcal Electronic energy + Delta-G solvation = -27236.654957 eV Core-core repulsion = 23148.429139 eV Total energy + Delta-G solvation = -4088.225818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22278 -39.90583 -39.06530 -38.50212 -36.51502 -35.11455 -32.89030 -32.47128 -32.15733 -31.65808 -29.47531 -29.08068 -27.20646 -25.28076 -24.39303 -24.14293 -21.72224 -21.31497 -20.52201 -20.26647 -18.60892 -17.57632 -17.34335 -17.03117 -16.83537 -16.08771 -15.79883 -15.32894 -15.11559 -15.01299 -14.59575 -14.55719 -14.40084 -14.09192 -13.86505 -13.69203 -13.48359 -13.32323 -13.13968 -12.64407 -12.57256 -12.49889 -12.42000 -11.92018 -11.57275 -11.27209 -10.97159 -10.83796 -10.79173 -10.62120 -10.42748 -10.37768 -10.28826 -10.14821 -9.33143 -9.23235 -8.81272 -8.62730 -8.07787 -7.20789 -6.41825 -4.00847 0.18697 0.96805 2.01141 2.03117 2.39096 2.67281 2.68149 3.14612 3.16245 3.20177 3.59695 3.70501 3.98780 4.06180 4.44342 4.48179 4.53614 4.64347 4.74807 4.81066 5.00447 5.01602 5.07042 5.13631 5.18104 5.27335 5.42369 5.50419 5.53450 5.63246 5.74166 5.80873 5.88469 5.92922 6.17908 6.33942 6.37771 6.64586 6.86211 6.92658 7.08627 7.18050 7.25165 7.37914 7.45433 7.69693 7.83098 8.03109 8.12967 9.03967 9.74296 10.76435 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.002147 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.078319 B =13040.717440 C =14066.932702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.407 3.593 3 O -0.468 6.468 4 C -0.273 4.273 5 C 0.010 3.990 6 C -0.225 4.225 7 C 0.400 3.600 8 N -0.664 5.664 9 C 0.499 3.501 10 O -0.439 6.439 11 C -0.090 4.090 12 C -0.037 4.037 13 C -0.196 4.196 14 C -0.074 4.074 15 C -0.229 4.229 16 C 0.154 3.846 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.173 4.173 27 N -0.483 5.483 28 C 0.189 3.811 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.419 0.581 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.269 0.731 41 H 0.114 0.886 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 18.390 9.542 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.286 3.714 3 O -0.345 6.345 4 C -0.278 4.278 5 C -0.015 4.015 6 C -0.249 4.249 7 C 0.168 3.832 8 N -0.310 5.310 9 C 0.284 3.716 10 O -0.304 6.304 11 C -0.130 4.130 12 C -0.038 4.038 13 C -0.215 4.215 14 C -0.092 4.092 15 C -0.248 4.248 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.192 4.192 27 N -0.198 5.198 28 C 0.029 3.971 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.256 0.744 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.528 17.945 9.070 21.470 hybrid contribution 0.247 0.016 0.090 0.263 sum 7.775 17.961 9.160 21.609 Atomic orbital electron populations 1.22259 0.93505 1.05187 1.04995 1.22203 0.91650 0.87098 0.70486 1.90537 1.72156 1.34291 1.37490 1.21415 0.95369 0.96544 1.14498 1.21297 0.93238 0.98180 0.88809 1.21205 1.01330 0.91462 1.10892 1.18862 0.89307 0.85689 0.89382 1.43918 1.11343 1.03890 1.71875 1.21209 0.88695 0.84865 0.76817 1.90879 1.13116 1.85636 1.40726 1.20606 0.97999 0.89587 1.04798 1.18597 0.96921 0.95016 0.93286 1.20340 1.03375 1.02106 0.95641 1.20679 0.95878 0.95476 0.97209 1.21187 1.06269 1.05174 0.92184 1.19266 0.92483 0.91017 0.87148 1.83973 1.47698 1.49636 1.26960 1.21315 1.12440 1.18320 0.94608 0.89106 1.25279 0.98483 0.98527 0.94259 1.70044 1.40659 1.41585 0.97639 0.85716 0.80057 0.79336 0.78343 1.19882 1.20296 1.19220 1.19941 1.02441 0.99192 0.97625 1.67889 1.06569 1.29088 1.16252 1.23238 1.00515 0.85530 0.87814 0.88235 0.89257 0.89293 0.83698 0.84015 0.74433 0.87861 0.87967 0.87933 0.87438 0.85580 0.92085 0.86795 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 9.76 36.01 0.35 -0.82 16 2 C 0.41 3.70 7.22 -30.82 -0.22 3.48 16 3 O -0.47 -5.65 17.15 5.55 0.10 -5.56 16 4 C -0.27 -2.59 5.89 -104.92 -0.62 -3.21 16 5 C 0.01 0.09 9.66 -39.20 -0.38 -0.29 16 6 C -0.23 -1.84 9.86 -39.67 -0.39 -2.23 16 7 C 0.40 4.49 7.41 -154.93 -1.15 3.35 16 8 N -0.66 -6.52 5.37 -11.44 -0.06 -6.58 16 9 C 0.50 6.85 7.78 -10.98 -0.09 6.77 16 10 O -0.44 -8.33 14.27 5.57 0.08 -8.25 16 11 C -0.09 -1.08 5.83 -29.04 -0.17 -1.25 16 12 C -0.04 -0.66 4.37 -104.65 -0.46 -1.12 16 13 C -0.20 -3.42 9.70 -39.54 -0.38 -3.81 16 14 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 15 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 16 C 0.15 3.81 6.65 -39.11 -0.26 3.55 16 17 O -0.18 -5.20 9.76 0.06 0.00 -5.20 16 18 C -0.39 -11.09 9.49 30.88 0.29 -10.79 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 22 Si 0.94 20.80 29.55 -169.99 -5.02 15.77 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 26 C -0.17 -3.69 9.65 -39.39 -0.38 -4.07 16 27 N -0.48 -6.64 7.84 -11.99 -0.09 -6.74 16 28 C 0.19 2.00 10.54 -17.04 -0.18 1.82 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.40 6.49 -51.93 -0.34 0.06 16 32 H 0.15 1.08 7.72 -52.48 -0.41 0.68 16 33 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.42 2.16 8.69 -40.82 -0.35 1.81 16 35 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.17 1.33 6.37 -52.48 -0.33 1.00 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -38.27 370.53 -8.06 -46.32 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.51 Total: 4.46 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -4.88 Total: -14.92 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.60 Total: -38.22 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.27 -8.06 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131828824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.424 kcal (2) G-P(sol) polarization free energy of solvation -38.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds