Wall clock time and date at job start Tue Mar 31 2020 23:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21290 * 120.00306 * 2 1 4 4 C 1.46864 * 119.99683 * 179.97438 * 2 1 3 5 5 C 1.40572 * 120.51114 * 179.97438 * 4 2 1 6 6 C 1.36852 * 118.45939 * 180.02562 * 5 4 2 7 7 C 1.39341 * 119.41092 * 359.97438 * 6 5 4 8 8 N 1.38864 * 119.49430 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99578 * 174.88870 * 8 7 6 10 10 O 1.21261 * 119.99726 * 5.11069 * 9 8 7 11 11 C 1.50695 * 119.99836 * 185.11516 * 9 8 7 12 12 C 1.50699 * 109.46977 * 179.97438 * 11 9 8 13 13 C 1.38318 * 119.96786 * 269.72269 * 12 11 9 14 14 C 1.38281 * 120.14004 * 179.76681 * 13 12 11 15 15 C 1.38118 * 120.06684 * 0.51305 * 14 13 12 16 16 C 1.38853 * 119.93361 * 359.74236 * 15 14 13 17 17 O 1.35748 * 120.07116 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00286 * 5.54705 * 17 16 15 19 19 H 1.07999 * 119.99607 * 354.94911 * 18 17 16 20 20 C 1.38649 * 120.00430 * 174.94566 * 18 17 16 21 21 N 1.31565 * 119.99863 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47185 * 90.00256 * 22 20 18 24 24 H 1.48497 * 109.47125 * 210.00272 * 22 20 18 25 25 H 1.48498 * 109.47124 * 330.00110 * 22 20 18 26 26 C 1.38081 * 119.96210 * 90.00171 * 12 11 9 27 27 N 1.32570 * 120.99978 * 359.97438 * 7 6 5 28 28 C 1.31602 * 121.68092 * 0.02562 * 27 7 6 29 29 H 1.08997 * 109.47140 * 270.00053 * 1 2 3 30 30 H 1.09003 * 109.47084 * 30.00098 * 1 2 3 31 31 H 1.08997 * 109.47381 * 149.99645 * 1 2 3 32 32 H 1.08005 * 120.76903 * 0.04066 * 5 4 2 33 33 H 1.07992 * 120.29228 * 179.97438 * 6 5 4 34 34 H 0.96999 * 120.00502 * 354.88210 * 8 7 6 35 35 H 1.09005 * 109.47030 * 299.99824 * 11 9 8 36 36 H 1.09001 * 109.47411 * 59.99745 * 11 9 8 37 37 H 1.08001 * 119.92955 * 0.02562 * 13 12 11 38 38 H 1.08003 * 119.96275 * 180.25351 * 14 13 12 39 39 H 1.08001 * 120.03502 * 179.72600 * 15 14 13 40 40 H 0.97001 * 119.99969 * 179.97438 * 21 20 18 41 41 H 1.07993 * 120.04043 * 359.95074 * 26 12 11 42 42 H 1.08008 * 119.76407 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6470 -1.2845 0.0000 6 6 4.2883 -2.4935 0.0001 7 6 3.5366 -3.6668 0.0012 8 7 4.1856 -4.8945 0.0017 9 6 3.4727 -6.0335 0.1068 10 8 2.2608 -5.9923 0.1074 11 6 4.1817 -7.3581 0.2235 12 6 3.1643 -8.4649 0.3274 13 6 2.7068 -8.8686 1.5687 14 6 1.7697 -9.8806 1.6679 15 6 1.2955 -10.4988 0.5275 16 6 1.7566 -10.0995 -0.7199 17 8 1.2928 -10.7055 -1.8425 18 6 0.3025 -11.6071 -1.6869 19 1 -0.0296 -11.8787 -0.6958 20 6 -0.2895 -12.1857 -2.7992 21 7 0.1154 -11.8552 -4.0066 22 14 -1.6620 -13.4343 -2.5836 23 1 -2.9706 -12.7325 -2.5607 24 1 -1.6367 -14.3977 -3.7133 25 1 -1.4699 -14.1652 -1.3053 26 6 2.6941 -9.0790 -0.8165 27 7 2.2115 -3.6288 0.0027 28 6 1.5528 -2.4895 0.0027 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 4.2078 -0.3615 -0.0001 33 1 5.3673 -2.5377 -0.0008 34 1 5.1519 -4.9324 -0.0736 35 1 4.8029 -7.5166 -0.6581 36 1 4.8092 -7.3570 1.1148 37 1 3.0792 -8.3896 2.4622 38 1 1.4114 -10.1908 2.6384 39 1 0.5669 -11.2922 0.6058 40 1 -0.2985 -12.2602 -4.7848 41 1 3.0544 -8.7660 -1.7853 42 1 0.4727 -2.4946 0.0044 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131828824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:18 Heat of formation + Delta-G solvation = -46.961465 kcal Electronic energy + Delta-G solvation = -27237.785069 eV Core-core repulsion = 23148.429139 eV Total energy + Delta-G solvation = -4089.355930 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.05378 -40.99588 -40.46452 -39.54854 -38.18001 -36.06566 -34.34279 -33.70428 -33.47418 -32.51458 -30.91033 -30.04867 -28.46160 -27.26173 -25.20320 -24.98864 -23.27663 -22.75978 -21.44999 -21.23799 -19.67314 -19.22276 -18.65519 -18.26864 -17.69748 -16.95644 -16.84130 -16.67937 -16.25523 -16.12051 -15.93447 -15.84275 -15.50015 -15.32780 -15.15274 -14.91380 -14.63542 -14.40285 -14.26113 -13.97836 -13.86006 -13.59190 -13.06751 -13.03181 -12.97791 -12.82605 -12.49213 -12.38047 -12.21552 -12.10121 -11.88398 -11.33440 -11.20037 -11.03606 -10.95577 -10.80135 -10.13362 -9.63281 -9.41468 -8.97017 -8.46952 -6.15243 -0.58157 0.26497 0.50737 0.76556 1.22793 1.33851 1.43728 1.51637 1.74948 1.81895 2.17796 2.82644 2.84202 3.04382 3.14991 3.37700 3.44614 3.76044 3.80351 3.83985 3.88985 4.11271 4.15983 4.21418 4.32781 4.44010 4.51081 4.57787 4.62285 4.64499 4.66410 4.75047 4.82710 5.00457 5.07211 5.12435 5.13782 5.24591 5.31511 5.63009 5.65893 5.73354 5.75854 6.03206 6.11059 6.26303 6.47705 6.87537 6.97863 7.27502 7.79599 8.76678 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.002147 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.078319 B =13040.717440 C =14066.932702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.409 3.591 3 O -0.502 6.502 4 C -0.274 4.274 5 C 0.001 3.999 6 C -0.204 4.204 7 C 0.375 3.625 8 N -0.645 5.645 9 C 0.502 3.498 10 O -0.504 6.504 11 C -0.086 4.086 12 C -0.028 4.028 13 C -0.178 4.178 14 C -0.075 4.075 15 C -0.246 4.246 16 C 0.110 3.890 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.019 2.981 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.252 1.252 26 C -0.190 4.190 27 N -0.531 5.531 28 C 0.179 3.821 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.442 0.558 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.272 0.728 41 H 0.107 0.893 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 19.720 12.297 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.291 3.709 3 O -0.381 6.381 4 C -0.278 4.278 5 C -0.025 4.025 6 C -0.226 4.226 7 C 0.143 3.857 8 N -0.294 5.294 9 C 0.290 3.710 10 O -0.373 6.373 11 C -0.125 4.125 12 C -0.029 4.029 13 C -0.196 4.196 14 C -0.093 4.093 15 C -0.265 4.265 16 C 0.060 3.940 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.838 3.162 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.175 1.175 26 C -0.209 4.209 27 N -0.246 5.246 28 C 0.019 3.981 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.283 0.717 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.201 19.323 11.873 24.475 hybrid contribution -0.038 -0.111 -0.540 0.553 sum 9.163 19.212 11.333 24.115 Atomic orbital electron populations 1.22299 0.91001 1.06064 1.06294 1.22617 0.93028 0.86301 0.68999 1.90528 1.73058 1.35181 1.39334 1.21579 0.96073 0.96401 1.13791 1.21608 0.93169 0.99112 0.88586 1.21506 1.03041 0.89836 1.08265 1.19170 0.89122 0.86807 0.90553 1.43601 1.12303 1.02634 1.70821 1.21408 0.87999 0.86100 0.75536 1.90874 1.15725 1.86629 1.44108 1.20732 0.96755 0.86476 1.08545 1.19155 0.96659 0.95145 0.91907 1.20979 1.01183 1.00297 0.97190 1.21130 0.95580 0.95126 0.97441 1.21296 1.06741 1.05767 0.92693 1.19896 0.94162 0.92621 0.87301 1.83932 1.49343 1.51538 1.29325 1.21812 1.12919 1.18754 0.95427 0.88272 1.26604 1.01216 1.00757 0.93613 1.70192 1.43096 1.44083 0.98720 0.84585 0.76133 0.76416 0.79057 1.19016 1.19372 1.17536 1.20237 1.02419 0.99126 0.99163 1.67801 1.08430 1.30746 1.17606 1.23462 1.01317 0.85212 0.88088 0.86550 0.88783 0.87998 0.82341 0.80052 0.71679 0.85200 0.83037 0.83436 0.83836 0.86595 0.91879 0.87455 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 9.76 71.24 0.70 -1.33 16 2 C 0.41 7.03 7.22 27.95 0.20 7.23 16 3 O -0.50 -11.75 17.15 -3.06 -0.05 -11.80 16 4 C -0.27 -4.88 5.89 -20.05 -0.12 -4.99 16 5 C 0.00 0.01 9.66 22.51 0.22 0.23 16 6 C -0.20 -2.70 9.86 22.21 0.22 -2.48 16 7 C 0.38 7.66 7.41 133.11 0.99 8.65 16 8 N -0.65 -10.69 5.37 -308.50 -1.66 -12.35 16 9 C 0.50 12.58 7.78 87.65 0.68 13.27 16 10 O -0.50 -18.85 14.27 -2.97 -0.04 -18.89 16 11 C -0.09 -1.72 5.83 29.10 0.17 -1.55 16 12 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 13 C -0.18 -5.59 9.70 22.30 0.22 -5.38 16 14 C -0.07 -2.67 10.04 22.25 0.22 -2.45 16 15 C -0.25 -11.22 9.17 22.39 0.21 -11.01 16 16 C 0.11 5.73 6.65 22.58 0.15 5.88 16 17 O -0.23 -14.64 9.76 -22.71 -0.22 -14.87 16 18 C -0.41 -24.90 9.49 67.92 0.64 -24.26 16 19 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 20 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 21 N -0.92 -58.06 13.67 21.61 0.30 -57.77 16 22 Si 1.02 44.07 29.55 68.60 2.03 46.10 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 C -0.19 -8.34 9.65 22.39 0.22 -8.12 16 27 N -0.53 -14.26 7.84 -191.86 -1.50 -15.77 16 28 C 0.18 3.66 10.54 85.12 0.90 4.56 16 29 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.77 6.49 -2.39 -0.02 0.75 16 32 H 0.16 2.00 7.72 -2.91 -0.02 1.98 16 33 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.44 2.63 8.69 -92.71 -0.81 1.82 16 35 H 0.13 1.99 8.09 -2.38 -0.02 1.98 16 36 H 0.15 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.12 5.38 5.64 -2.91 -0.02 5.37 16 40 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 42 H 0.18 2.84 6.37 -2.91 -0.02 2.82 16 Total: -1.00 -93.01 370.53 5.12 -87.90 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.29 Total: 21.22 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 5.99 Total: -23.77 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.86 Total: -85.88 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.32 Total: -45.56 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -93.01 5.12 -87.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131828824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.937 kcal (2) G-P(sol) polarization free energy of solvation -93.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds