Wall clock time and date at job start Tue Mar 31 2020 23:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48502 * 109.46913 * 239.99859 * 3 2 1 5 5 H 1.48497 * 109.47477 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46927 * 120.00391 * 3 2 1 7 7 C 1.37878 * 119.99479 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46610 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.96940 * 125.00265 * 10 9 7 12 12 C 1.35237 * 107.85941 * 179.73198 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40151 * 125.97476 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21297 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00092 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.38298 * 119.81450 * 89.99508 * 18 17 15 20 20 C 1.38398 * 119.82752 * 179.97438 * 19 18 17 21 21 C 1.37677 * 119.91256 * 0.02562 * 20 19 18 22 22 C 1.38904 * 120.80646 * 359.97438 * 21 20 19 23 23 C 1.37941 * 119.80906 * 269.72716 * 18 17 15 24 24 N 1.39537 * 110.22575 * 179.97438 * 22 21 20 25 25 C 1.34368 * 112.24731 * 359.97438 * 24 22 21 26 26 O 1.21293 * 126.43984 * 180.02562 * 25 24 22 27 27 C 1.51134 * 132.85095 * 179.97438 * 21 20 19 28 28 N 1.31213 * 108.04995 * 359.97438 * 13 12 11 29 29 H 0.97001 * 119.99807 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46699 * 60.00648 * 9 7 2 31 31 H 1.08992 * 109.47326 * 299.99843 * 9 7 2 32 32 H 1.08002 * 126.07481 * 0.02562 * 11 10 9 33 33 H 1.08000 * 126.07181 * 180.26563 * 12 11 10 34 34 H 0.96994 * 120.00376 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.47079 * 299.99787 * 17 15 14 36 36 H 1.08996 * 109.47215 * 59.99662 * 17 15 14 37 37 H 1.08003 * 120.09075 * 359.97438 * 19 18 17 38 38 H 1.07995 * 120.04287 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.93503 * 359.97438 * 23 18 17 40 40 H 0.97000 * 123.87182 * 180.02562 * 24 22 21 41 41 H 1.08995 * 110.51089 * 298.68151 * 27 21 20 42 42 H 1.09000 * 110.50948 * 61.39021 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2426 -4.6228 0.8925 12 6 3.2572 -5.4461 0.5436 13 6 3.8661 -4.9165 -0.6055 14 7 4.9588 -5.4691 -1.2872 15 6 5.5191 -6.6131 -0.8471 16 8 5.0779 -7.1643 0.1392 17 6 6.6946 -7.2070 -1.5798 18 6 7.1282 -8.4747 -0.8899 19 6 6.5758 -9.6856 -1.2657 20 6 6.9742 -10.8500 -0.6326 21 6 7.9179 -10.7989 0.3686 22 6 8.4800 -9.5889 0.7551 23 6 8.0779 -8.4213 0.1092 24 7 9.4037 -9.7920 1.7811 25 6 9.5070 -11.0872 2.1236 26 8 10.2292 -11.5503 2.9810 27 6 8.5531 -11.8598 1.2376 28 7 3.2331 -3.8137 -0.9294 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5566 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 1.5787 -4.7533 1.7343 33 1 3.5476 -6.3506 1.0574 34 1 5.3115 -5.0286 -2.0761 35 1 6.4063 -7.4329 -2.6064 36 1 7.5190 -6.4941 -1.5824 37 1 5.8355 -9.7226 -2.0512 38 1 6.5449 -11.7975 -0.9231 39 1 8.5080 -7.4725 0.3937 40 1 9.9123 -9.0798 2.1995 41 1 7.7968 -12.3638 1.8393 42 1 9.0974 -12.5791 0.6257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182754397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:23 Heat of formation + Delta-G solvation = 47.334319 kcal Electronic energy + Delta-G solvation = -27134.742300 eV Core-core repulsion = 23081.768093 eV Total energy + Delta-G solvation = -4052.974207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77827 -40.73710 -39.59215 -38.58163 -36.25207 -34.76741 -33.44238 -33.21856 -31.29040 -30.40655 -29.98378 -29.34912 -27.11465 -26.20062 -23.21942 -23.14150 -22.10275 -21.73070 -20.88912 -20.14042 -19.57137 -18.12400 -17.09070 -16.98456 -16.63963 -16.53888 -16.35999 -16.03953 -15.63587 -15.23234 -14.90390 -14.47525 -14.35764 -14.18338 -14.02193 -13.83162 -13.41810 -13.19307 -12.86748 -12.73690 -12.53447 -12.34763 -12.25197 -12.14701 -11.76890 -11.34186 -11.12489 -11.07937 -10.88687 -10.58579 -10.48191 -10.28317 -10.05637 -9.66152 -9.54055 -9.09109 -8.65670 -8.36654 -8.17252 -7.51067 -6.26976 -4.32274 0.78914 0.95211 2.08071 2.27343 2.60380 2.75441 2.89437 3.23207 3.26771 3.30786 3.40614 3.67426 3.71621 3.89517 4.01510 4.29635 4.30348 4.44191 4.71290 4.73837 4.91771 4.95333 5.02905 5.07195 5.08105 5.16055 5.42117 5.46993 5.55052 5.72426 5.77132 5.99976 6.13169 6.22661 6.26416 6.38008 6.45364 6.56877 6.64920 6.82980 7.02087 7.36829 7.53020 7.56658 7.67834 7.85761 8.00816 8.20269 8.59617 8.76761 9.33332 10.81693 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022809 B = 0.001838 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.302539 B =15231.229779 C =15508.379673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.258 3.742 10 N -0.318 5.318 11 C 0.051 3.949 12 C -0.287 4.287 13 C 0.256 3.744 14 N -0.632 5.632 15 C 0.518 3.482 16 O -0.508 6.508 17 C -0.099 4.099 18 C -0.029 4.029 19 C -0.119 4.119 20 C -0.065 4.065 21 C -0.143 4.143 22 C 0.139 3.861 23 C -0.119 4.119 24 N -0.659 5.659 25 C 0.528 3.472 26 O -0.509 6.509 27 C -0.114 4.114 28 N -0.304 5.304 29 H 0.268 0.732 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.411 0.589 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.413 0.587 41 H 0.123 0.877 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.590 -21.139 -3.915 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.319 4.319 13 C 0.003 3.997 14 N -0.280 5.280 15 C 0.304 3.696 16 O -0.381 6.381 17 C -0.139 4.139 18 C -0.030 4.030 19 C -0.138 4.138 20 C -0.083 4.083 21 C -0.146 4.146 22 C 0.043 3.957 23 C -0.140 4.140 24 N -0.302 5.302 25 C 0.317 3.683 26 O -0.384 6.384 27 C -0.153 4.153 28 N -0.135 5.135 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.246 0.754 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.251 0.749 41 H 0.141 0.859 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.344 -20.738 -3.526 26.037 hybrid contribution 0.724 1.130 0.403 1.402 sum 16.068 -19.608 -3.123 25.542 Atomic orbital electron populations 1.69911 1.06031 1.27760 1.49602 1.24951 0.95000 0.99556 0.94587 0.86377 0.79376 0.81772 0.78909 1.19930 1.21030 1.20059 1.21206 0.93931 0.89382 1.52260 0.91378 1.19749 0.85605 0.81278 0.99290 1.49091 1.23091 1.19709 1.18131 1.22574 1.00355 0.90240 0.96752 1.21517 1.02307 1.06280 1.01757 1.19110 0.91604 0.94252 0.94747 1.42483 1.30215 1.24746 1.30512 1.20444 0.84216 0.79831 0.85135 1.90685 1.62057 1.59952 1.25391 1.20657 0.97192 0.95695 1.00380 1.18902 0.94939 0.93875 0.95325 1.20937 1.00294 0.91384 1.01224 1.20202 0.95192 0.98871 0.94055 1.19775 1.01026 0.93580 1.00231 1.18012 0.91999 0.95293 0.90430 1.20163 1.00227 0.96070 0.97537 1.43737 1.40524 1.10385 1.35568 1.20633 0.82432 0.82437 0.82842 1.90826 1.41346 1.73425 1.32754 1.21046 0.98816 0.97982 0.97477 1.77326 1.03632 1.16212 1.16377 0.92249 0.93691 0.92530 0.81522 0.82329 0.75377 0.87059 0.87301 0.85151 0.85174 0.85547 0.74868 0.85879 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.52 9.23 -34.44 -0.32 -14.84 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.26 6.46 6.26 -5.19 -0.03 6.43 16 10 N -0.32 -7.25 3.67 -62.56 -0.23 -7.48 16 11 C 0.05 0.99 11.44 -17.24 -0.20 0.80 16 12 C -0.29 -5.50 9.61 -39.83 -0.38 -5.89 16 13 C 0.26 4.87 8.11 -154.40 -1.25 3.62 16 14 N -0.63 -8.66 5.45 -11.13 -0.06 -8.72 16 15 C 0.52 6.30 7.79 -10.98 -0.09 6.22 16 16 O -0.51 -8.03 13.17 5.54 0.07 -7.96 16 17 C -0.10 -0.69 5.82 -29.03 -0.17 -0.86 16 18 C -0.03 -0.24 4.36 -104.71 -0.46 -0.70 16 19 C -0.12 -0.90 9.71 -39.50 -0.38 -1.29 16 20 C -0.06 -0.45 10.04 -39.73 -0.40 -0.85 16 21 C -0.14 -1.11 6.35 -104.37 -0.66 -1.77 16 22 C 0.14 1.19 7.11 -83.69 -0.60 0.59 16 23 C -0.12 -1.00 9.71 -39.27 -0.38 -1.38 16 24 N -0.66 -5.38 5.88 -9.70 -0.06 -5.43 16 25 C 0.53 4.97 8.71 -10.83 -0.09 4.88 16 26 O -0.51 -6.54 18.03 5.55 0.10 -6.44 16 27 C -0.11 -0.75 6.88 -28.48 -0.20 -0.94 16 28 N -0.30 -6.78 12.42 31.44 0.39 -6.39 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 33 H 0.16 2.96 5.91 -52.49 -0.31 2.65 16 34 H 0.41 4.34 8.82 -40.82 -0.36 3.98 16 35 H 0.11 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.41 2.69 8.96 -40.82 -0.37 2.32 16 41 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -35.61 370.05 -8.99 -44.60 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.80 Total: 4.86 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -5.70 Total: -4.39 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.78 Total: -52.31 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.17 Total: -14.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.61 -8.99 -44.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182754397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.935 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds