Wall clock time and date at job start Tue Mar 31 2020 23:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48502 * 109.46913 * 239.99859 * 3 2 1 5 5 H 1.48497 * 109.47477 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46927 * 120.00391 * 3 2 1 7 7 C 1.37878 * 119.99479 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46610 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.96940 * 125.00265 * 10 9 7 12 12 C 1.35237 * 107.85941 * 179.73198 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40151 * 125.97476 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21297 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00092 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.38298 * 119.81450 * 89.99508 * 18 17 15 20 20 C 1.38398 * 119.82752 * 179.97438 * 19 18 17 21 21 C 1.37677 * 119.91256 * 0.02562 * 20 19 18 22 22 C 1.38904 * 120.80646 * 359.97438 * 21 20 19 23 23 C 1.37941 * 119.80906 * 269.72716 * 18 17 15 24 24 N 1.39537 * 110.22575 * 179.97438 * 22 21 20 25 25 C 1.34368 * 112.24731 * 359.97438 * 24 22 21 26 26 O 1.21293 * 126.43984 * 180.02562 * 25 24 22 27 27 C 1.51134 * 132.85095 * 179.97438 * 21 20 19 28 28 N 1.31213 * 108.04995 * 359.97438 * 13 12 11 29 29 H 0.97001 * 119.99807 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46699 * 60.00648 * 9 7 2 31 31 H 1.08992 * 109.47326 * 299.99843 * 9 7 2 32 32 H 1.08002 * 126.07481 * 0.02562 * 11 10 9 33 33 H 1.08000 * 126.07181 * 180.26563 * 12 11 10 34 34 H 0.96994 * 120.00376 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.47079 * 299.99787 * 17 15 14 36 36 H 1.08996 * 109.47215 * 59.99662 * 17 15 14 37 37 H 1.08003 * 120.09075 * 359.97438 * 19 18 17 38 38 H 1.07995 * 120.04287 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.93503 * 359.97438 * 23 18 17 40 40 H 0.97000 * 123.87182 * 180.02562 * 24 22 21 41 41 H 1.08995 * 110.51089 * 298.68151 * 27 21 20 42 42 H 1.09000 * 110.50948 * 61.39021 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2426 -4.6228 0.8925 12 6 3.2572 -5.4461 0.5436 13 6 3.8661 -4.9165 -0.6055 14 7 4.9588 -5.4691 -1.2872 15 6 5.5191 -6.6131 -0.8471 16 8 5.0779 -7.1643 0.1392 17 6 6.6946 -7.2070 -1.5798 18 6 7.1282 -8.4747 -0.8899 19 6 6.5758 -9.6856 -1.2657 20 6 6.9742 -10.8500 -0.6326 21 6 7.9179 -10.7989 0.3686 22 6 8.4800 -9.5889 0.7551 23 6 8.0779 -8.4213 0.1092 24 7 9.4037 -9.7920 1.7811 25 6 9.5070 -11.0872 2.1236 26 8 10.2292 -11.5503 2.9810 27 6 8.5531 -11.8598 1.2376 28 7 3.2331 -3.8137 -0.9294 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5566 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 1.5787 -4.7533 1.7343 33 1 3.5476 -6.3506 1.0574 34 1 5.3115 -5.0286 -2.0761 35 1 6.4063 -7.4329 -2.6064 36 1 7.5190 -6.4941 -1.5824 37 1 5.8355 -9.7226 -2.0512 38 1 6.5449 -11.7975 -0.9231 39 1 8.5080 -7.4725 0.3937 40 1 9.9123 -9.0798 2.1995 41 1 7.7968 -12.3638 1.8393 42 1 9.0974 -12.5791 0.6257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182754397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:23 Heat of formation + Delta-G solvation = 23.616939 kcal Electronic energy + Delta-G solvation = -27135.770762 eV Core-core repulsion = 23081.768093 eV Total energy + Delta-G solvation = -4054.002670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41628 -42.14877 -40.66802 -39.37721 -36.97587 -36.12860 -35.23533 -33.89336 -32.82174 -31.28157 -30.89562 -30.55161 -28.65803 -27.20970 -24.96640 -23.72223 -23.17770 -22.44064 -22.04675 -21.33279 -20.78086 -18.80402 -18.67152 -18.25211 -17.82621 -17.63429 -17.06307 -17.02604 -16.66939 -16.42336 -16.11520 -15.78695 -15.39990 -15.10696 -15.04878 -14.67088 -14.48514 -14.22834 -14.06735 -13.79740 -13.74752 -13.65241 -13.33742 -13.01208 -12.91205 -12.72800 -12.67179 -12.27681 -12.03816 -11.87301 -11.77532 -11.57359 -11.36930 -11.32889 -10.82115 -10.71425 -9.72753 -9.66353 -9.08762 -8.97945 -8.32589 -6.46866 0.18794 0.37386 1.00367 1.37339 1.38996 1.40482 1.46892 1.52051 1.53068 2.01061 2.29241 2.31763 2.45996 2.86928 2.99066 3.13096 3.46038 3.68699 3.84956 3.93094 4.10539 4.22101 4.30190 4.38970 4.50891 4.52235 4.58736 4.70109 4.82266 4.90540 4.91415 4.94642 5.01548 5.04657 5.16191 5.21899 5.45662 5.55557 5.56737 5.69266 5.76549 5.80603 5.98644 6.07862 6.27571 6.35961 6.65146 6.90177 7.06292 7.22355 7.23005 8.74663 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022809 B = 0.001838 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.302539 B =15231.229779 C =15508.379673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.052 3.948 12 C -0.293 4.293 13 C 0.267 3.733 14 N -0.626 5.626 15 C 0.520 3.480 16 O -0.544 6.544 17 C -0.086 4.086 18 C -0.044 4.044 19 C -0.124 4.124 20 C -0.068 4.068 21 C -0.146 4.146 22 C 0.118 3.882 23 C -0.128 4.128 24 N -0.655 5.655 25 C 0.521 3.479 26 O -0.553 6.553 27 C -0.107 4.107 28 N -0.347 5.347 29 H 0.272 0.728 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.197 0.803 33 H 0.166 0.834 34 H 0.426 0.574 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.133 0.867 40 H 0.417 0.583 41 H 0.138 0.862 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.572 -21.855 -4.980 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.097 4.097 12 C -0.324 4.324 13 C 0.012 3.988 14 N -0.276 5.276 15 C 0.308 3.692 16 O -0.419 6.419 17 C -0.125 4.125 18 C -0.045 4.045 19 C -0.143 4.143 20 C -0.086 4.086 21 C -0.149 4.149 22 C 0.022 3.978 23 C -0.149 4.149 24 N -0.298 5.298 25 C 0.311 3.689 26 O -0.431 6.431 27 C -0.145 4.145 28 N -0.178 5.178 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.184 0.816 34 H 0.264 0.736 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.256 0.744 41 H 0.155 0.845 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.338 -21.455 -4.629 27.362 hybrid contribution 0.455 1.224 0.718 1.491 sum 16.793 -20.231 -3.911 26.581 Atomic orbital electron populations 1.69993 1.07218 1.28815 1.49885 1.25756 0.95863 1.02763 0.93927 0.85398 0.78273 0.77819 0.78930 1.19681 1.19899 1.19563 1.21364 0.93376 0.90935 1.52858 0.92888 1.19318 0.85714 0.81579 0.98022 1.48820 1.23890 1.20285 1.19727 1.23154 1.00673 0.89088 0.96742 1.21706 1.02301 1.06405 1.02011 1.19501 0.91884 0.92948 0.94426 1.42715 1.28831 1.25259 1.30803 1.21464 0.84557 0.78558 0.84616 1.90663 1.63332 1.60723 1.27221 1.20732 0.95405 0.95444 1.00960 1.19093 0.95183 0.94622 0.95640 1.21266 1.00215 0.91373 1.01459 1.20514 0.94686 0.99938 0.93448 1.20013 1.01005 0.93526 1.00366 1.18208 0.92664 0.96021 0.90940 1.20365 1.00497 0.96373 0.97649 1.43755 1.40301 1.10366 1.35369 1.21105 0.82275 0.82972 0.82540 1.90797 1.43350 1.74198 1.34774 1.21090 0.98521 0.97793 0.97138 1.77245 1.04728 1.18243 1.17544 0.91858 0.96044 0.92583 0.78620 0.81624 0.73562 0.83640 0.84510 0.83509 0.82725 0.84890 0.74439 0.84456 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.80 13.29 21.45 0.28 -51.52 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.55 -30.55 9.23 25.60 0.24 -30.31 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 14.02 6.26 85.63 0.54 14.55 16 10 N -0.35 -15.96 3.67 -351.85 -1.29 -17.25 16 11 C 0.05 2.02 11.44 83.52 0.96 2.97 16 12 C -0.29 -11.04 9.61 22.11 0.21 -10.83 16 13 C 0.27 10.00 8.11 133.33 1.08 11.08 16 14 N -0.63 -16.02 5.45 -307.50 -1.68 -17.70 16 15 C 0.52 11.43 7.79 87.66 0.68 12.11 16 16 O -0.54 -16.35 13.17 -3.08 -0.04 -16.39 16 17 C -0.09 -0.90 5.82 29.10 0.17 -0.73 16 18 C -0.04 -0.61 4.36 -19.92 -0.09 -0.69 16 19 C -0.12 -1.52 9.71 22.32 0.22 -1.30 16 20 C -0.07 -0.76 10.04 22.18 0.22 -0.54 16 21 C -0.15 -1.97 6.35 -19.70 -0.13 -2.10 16 22 C 0.12 1.87 7.11 38.35 0.27 2.14 16 23 C -0.13 -1.93 9.71 22.47 0.22 -1.71 16 24 N -0.66 -10.45 5.88 -303.21 -1.78 -12.23 16 25 C 0.52 9.64 8.71 87.94 0.77 10.41 16 26 O -0.55 -14.49 18.03 -3.07 -0.06 -14.55 16 27 C -0.11 -1.22 6.88 29.46 0.20 -1.01 16 28 N -0.35 -15.56 12.42 -54.45 -0.68 -16.23 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 2.83 8.07 -2.39 -0.02 2.81 16 32 H 0.20 6.10 8.06 -2.91 -0.02 6.08 16 33 H 0.17 6.04 5.91 -2.91 -0.02 6.02 16 34 H 0.43 8.09 8.82 -92.71 -0.82 7.27 16 35 H 0.15 0.60 8.08 -2.39 -0.02 0.58 16 36 H 0.14 0.74 8.08 -2.39 -0.02 0.72 16 37 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.42 5.49 8.96 -92.71 -0.83 4.66 16 41 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.78 370.05 2.26 -76.51 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.55 Total: 18.81 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.02 Total: 5.46 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -5.14 Total: -114.93 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.10 Total: -30.93 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -78.78 2.26 -76.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182754397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.131 kcal (2) G-P(sol) polarization free energy of solvation -78.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds