Wall clock time and date at job start Tue Mar 31 2020 23:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46489 * 109.47539 * 2 1 4 4 C 1.46500 * 119.99918 * 270.00090 * 3 2 1 5 5 C 1.50708 * 109.47241 * 269.99755 * 4 3 2 6 6 H 1.07998 * 119.99356 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99970 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00576 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99845 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46941 * 90.00042 * 9 7 5 11 11 H 1.48498 * 109.47456 * 210.00257 * 9 7 5 12 12 H 1.48500 * 109.47141 * 330.00634 * 9 7 5 13 13 C 1.34781 * 120.00319 * 89.99633 * 3 2 1 14 14 O 1.21287 * 119.99921 * 180.27373 * 13 3 2 15 15 C 1.50699 * 119.99741 * 0.02562 * 13 3 2 16 16 O 1.42898 * 109.46834 * 179.97438 * 15 13 3 17 17 C 1.35954 * 116.99860 * 179.97438 * 16 15 13 18 18 C 1.38667 * 120.06330 * 0.02562 * 17 16 15 19 19 C 1.38181 * 119.96790 * 179.97438 * 18 17 16 20 20 C 1.50707 * 119.94932 * 179.97438 * 19 18 17 21 21 C 1.38257 * 120.10078 * 0.02562 * 19 18 17 22 22 N 1.48004 * 119.93970 * 179.97438 * 21 19 18 23 23 O 1.21801 * 119.99723 * 216.86228 * 22 21 19 24 24 O 1.21795 * 119.99713 * 36.86439 * 22 21 19 25 25 C 1.38259 * 120.12400 * 0.02562 * 21 19 18 26 26 C 1.38341 * 120.02734 * 359.70113 * 25 21 19 27 27 F 1.35101 * 120.04345 * 180.30325 * 26 25 21 28 28 H 1.08996 * 109.46861 * 60.00182 * 1 2 3 29 29 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46614 * 300.00270 * 1 2 3 31 31 H 1.09004 * 109.47090 * 239.99552 * 2 1 3 32 32 H 1.09010 * 109.46909 * 120.00438 * 2 1 3 33 33 H 1.08999 * 109.47400 * 29.99611 * 4 3 2 34 34 H 1.09004 * 109.47254 * 149.99925 * 4 3 2 35 35 H 0.96999 * 120.00292 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.46968 * 299.99913 * 15 13 3 37 37 H 1.09000 * 109.46939 * 60.00103 * 15 13 3 38 38 H 1.07999 * 120.01353 * 359.94813 * 18 17 16 39 39 H 1.09000 * 109.46518 * 95.70893 * 20 19 18 40 40 H 1.08996 * 109.47219 * 215.71067 * 20 19 18 41 41 H 1.08999 * 109.47291 * 335.71622 * 20 19 18 42 42 H 1.07997 * 119.99020 * 179.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1492 2.3893 -2.8780 8 7 3.3493 3.1254 -3.6181 9 14 5.9137 2.0963 -3.4169 10 1 5.9776 0.8749 -4.2591 11 1 6.3923 3.2635 -4.2003 12 1 6.7737 1.9175 -2.2195 13 6 2.2431 2.0165 1.1672 14 8 2.6427 3.1616 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.3023 2.1814 3.5584 17 6 2.1290 1.6915 4.8147 18 6 1.6708 0.3956 4.9980 19 6 1.4959 -0.1004 6.2758 20 6 0.9974 -1.5087 6.4744 21 6 1.7766 0.6936 7.3722 22 7 1.5874 0.1588 8.7393 23 8 1.1728 0.8847 9.6251 24 8 1.8464 -1.0070 8.9783 25 6 2.2326 1.9866 7.1941 26 6 2.4150 2.4866 5.9172 27 9 2.8664 3.7480 5.7428 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1409 -1.1384 35 1 3.6754 3.5159 -4.4440 36 1 0.9445 1.0115 2.5302 37 1 2.6228 0.4187 2.5299 38 1 1.4504 -0.2255 4.1424 39 1 1.8457 -2.1768 6.6231 40 1 0.3489 -1.5445 7.3498 41 1 0.4371 -1.8234 5.5940 42 1 2.4507 2.6051 8.0522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186731419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:20 Heat of formation + Delta-G solvation = -89.324845 kcal Electronic energy + Delta-G solvation = -29230.247074 eV Core-core repulsion = 24708.284906 eV Total energy + Delta-G solvation = -4521.962169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.28056 -42.56387 -40.86866 -39.34501 -38.04475 -36.87631 -35.55367 -33.29218 -32.95237 -31.77754 -30.36341 -29.45663 -28.06043 -26.97677 -25.77030 -23.65938 -23.25677 -22.59678 -22.36057 -19.71285 -19.22413 -18.82637 -18.65317 -18.11189 -17.16687 -16.89256 -16.58488 -16.54517 -16.28992 -15.82427 -15.62120 -15.21181 -14.57365 -14.45040 -14.26898 -14.15922 -13.77980 -13.57814 -13.34853 -13.03627 -12.81398 -12.70961 -12.32113 -12.20376 -12.13420 -11.86313 -11.81329 -11.58485 -11.44668 -11.32649 -11.31776 -11.06260 -10.92063 -10.67626 -10.25494 -9.78746 -9.75968 -9.22887 -9.04641 -8.54640 -7.93589 -6.15831 -4.21471 -0.42053 0.21071 0.76235 1.00927 2.21727 2.53688 3.00897 3.22752 3.30587 3.34153 3.40317 3.64042 3.78536 3.86620 3.99506 4.34439 4.49246 4.54895 4.62292 4.69237 4.77359 4.79281 4.93268 5.01390 5.08673 5.13013 5.19284 5.33997 5.36582 5.47780 5.50616 5.58805 5.76973 6.00749 6.02853 6.25238 6.51285 6.85886 7.24589 7.31538 7.32246 7.79149 8.07401 8.10586 8.66829 8.84493 9.44171 10.92374 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.002437 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.710484 B =11486.413986 C =12093.630507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.512 6.512 15 C 0.031 3.969 16 O -0.262 6.262 17 C 0.161 3.839 18 C -0.191 4.191 19 C 0.015 3.985 20 C -0.127 4.127 21 C -0.063 4.063 22 N 0.033 4.967 23 O -0.158 6.158 24 O -0.148 6.148 25 C -0.055 4.055 26 C 0.075 3.925 27 F -0.110 7.110 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.163 0.837 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -10.878 18.331 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.387 6.387 15 C -0.047 4.047 16 O -0.172 6.172 17 C 0.112 3.888 18 C -0.210 4.210 19 C 0.013 3.987 20 C -0.183 4.183 21 C -0.146 4.146 22 N 0.554 4.446 23 O -0.374 6.374 24 O -0.366 6.366 25 C -0.074 4.074 26 C 0.054 3.946 27 F -0.088 7.088 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.180 0.820 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.900 -9.609 17.361 21.008 hybrid contribution 0.937 -0.227 -0.145 0.975 sum -5.963 -9.836 17.216 20.705 Atomic orbital electron populations 1.22254 0.96424 1.01765 1.02576 1.21522 0.93765 0.83945 1.03054 1.48221 1.63667 1.13389 1.07070 1.19370 0.96624 0.93745 0.77326 1.21388 0.96778 1.32395 1.06471 0.92395 1.24929 0.97986 0.94747 0.96326 1.69918 1.35802 1.33095 1.14313 0.86479 0.84447 0.77767 0.78641 1.20570 1.20983 1.19857 1.19514 0.80145 0.87219 0.84032 1.90765 1.44229 1.17247 1.86469 1.23061 1.02410 0.93529 0.85683 1.86357 1.79967 1.40378 1.10503 1.19427 0.91892 0.91921 0.85601 1.21081 1.07370 0.94859 0.97708 1.19538 0.92559 0.96507 0.90091 1.21094 1.02791 0.90517 1.03928 1.20296 1.16576 0.95741 0.82018 1.43350 0.97973 1.00709 1.02529 1.94575 1.46420 1.57082 1.39359 1.94537 1.53007 1.01311 1.87782 1.20556 0.96379 0.93257 0.97248 1.16387 1.06030 0.81870 0.90305 1.91630 1.86399 1.35011 1.95741 0.91585 0.91777 0.93222 0.89196 0.91981 0.94491 0.93640 0.92553 0.88643 0.88535 0.81960 0.88183 0.90391 0.89816 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.10 1.32 5.93 -4.05 -0.02 1.30 16 3 N -0.59 -11.13 2.46 -175.05 -0.43 -11.56 16 4 C 0.25 6.05 5.16 -5.19 -0.03 6.02 16 5 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 9 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.51 9.67 7.75 -10.98 -0.09 9.58 16 14 O -0.51 -12.61 16.08 -14.36 -0.23 -12.84 16 15 C 0.03 0.39 3.77 36.01 0.14 0.53 16 16 O -0.26 -3.81 9.53 -39.51 -0.38 -4.18 16 17 C 0.16 1.81 6.69 -39.18 -0.26 1.55 16 18 C -0.19 -1.53 8.67 -39.44 -0.34 -1.87 16 19 C 0.01 0.12 5.87 -104.63 -0.61 -0.50 16 20 C -0.13 -0.75 8.63 36.01 0.31 -0.44 16 21 C -0.06 -0.61 6.49 -79.94 -0.52 -1.13 16 22 N 0.03 0.36 4.14 33.97 0.14 0.50 16 23 O -0.16 -1.89 18.93 -29.46 -0.56 -2.45 16 24 O -0.15 -1.64 16.74 -29.46 -0.49 -2.14 16 25 C -0.05 -0.52 9.63 -39.54 -0.38 -0.90 16 26 C 0.08 0.85 7.31 -39.30 -0.29 0.56 16 27 F -0.11 -1.47 17.11 2.25 0.04 -1.43 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.48 7.22 -51.93 -0.38 0.11 16 31 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.06 0.59 6.44 -51.92 -0.33 0.26 16 33 H 0.04 0.90 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.10 0.86 6.71 -51.93 -0.35 0.51 16 37 H 0.10 0.92 6.92 -51.93 -0.36 0.56 16 38 H 0.16 0.84 6.30 -52.49 -0.33 0.51 16 39 H 0.10 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.08 0.52 6.90 -51.93 -0.36 0.16 16 41 H 0.08 0.31 8.05 -51.93 -0.42 -0.10 16 42 H 0.17 1.31 8.00 -52.49 -0.42 0.89 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -33.92 370.75 -7.72 -41.64 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -4.98 Total: -4.59 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.13 Total: 0.23 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.45 Total: -35.98 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.66 Total: -21.61 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.92 -7.72 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186731419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.686 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds