Wall clock time and date at job start Tue Mar 31 2020 23:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46489 * 109.47539 * 2 1 4 4 C 1.46500 * 119.99918 * 270.00090 * 3 2 1 5 5 C 1.50708 * 109.47241 * 269.99755 * 4 3 2 6 6 H 1.07998 * 119.99356 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99970 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00576 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99845 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46941 * 90.00042 * 9 7 5 11 11 H 1.48498 * 109.47456 * 210.00257 * 9 7 5 12 12 H 1.48500 * 109.47141 * 330.00634 * 9 7 5 13 13 C 1.34781 * 120.00319 * 89.99633 * 3 2 1 14 14 O 1.21287 * 119.99921 * 180.27373 * 13 3 2 15 15 C 1.50699 * 119.99741 * 0.02562 * 13 3 2 16 16 O 1.42898 * 109.46834 * 179.97438 * 15 13 3 17 17 C 1.35954 * 116.99860 * 179.97438 * 16 15 13 18 18 C 1.38667 * 120.06330 * 0.02562 * 17 16 15 19 19 C 1.38181 * 119.96790 * 179.97438 * 18 17 16 20 20 C 1.50707 * 119.94932 * 179.97438 * 19 18 17 21 21 C 1.38257 * 120.10078 * 0.02562 * 19 18 17 22 22 N 1.48004 * 119.93970 * 179.97438 * 21 19 18 23 23 O 1.21801 * 119.99723 * 216.86228 * 22 21 19 24 24 O 1.21795 * 119.99713 * 36.86439 * 22 21 19 25 25 C 1.38259 * 120.12400 * 0.02562 * 21 19 18 26 26 C 1.38341 * 120.02734 * 359.70113 * 25 21 19 27 27 F 1.35101 * 120.04345 * 180.30325 * 26 25 21 28 28 H 1.08996 * 109.46861 * 60.00182 * 1 2 3 29 29 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46614 * 300.00270 * 1 2 3 31 31 H 1.09004 * 109.47090 * 239.99552 * 2 1 3 32 32 H 1.09010 * 109.46909 * 120.00438 * 2 1 3 33 33 H 1.08999 * 109.47400 * 29.99611 * 4 3 2 34 34 H 1.09004 * 109.47254 * 149.99925 * 4 3 2 35 35 H 0.96999 * 120.00292 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.46968 * 299.99913 * 15 13 3 37 37 H 1.09000 * 109.46939 * 60.00103 * 15 13 3 38 38 H 1.07999 * 120.01353 * 359.94813 * 18 17 16 39 39 H 1.09000 * 109.46518 * 95.70893 * 20 19 18 40 40 H 1.08996 * 109.47219 * 215.71067 * 20 19 18 41 41 H 1.08999 * 109.47291 * 335.71622 * 20 19 18 42 42 H 1.07997 * 119.99020 * 179.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1492 2.3893 -2.8780 8 7 3.3493 3.1254 -3.6181 9 14 5.9137 2.0963 -3.4169 10 1 5.9776 0.8749 -4.2591 11 1 6.3923 3.2635 -4.2003 12 1 6.7737 1.9175 -2.2195 13 6 2.2431 2.0165 1.1672 14 8 2.6427 3.1616 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.3023 2.1814 3.5584 17 6 2.1290 1.6915 4.8147 18 6 1.6708 0.3956 4.9980 19 6 1.4959 -0.1004 6.2758 20 6 0.9974 -1.5087 6.4744 21 6 1.7766 0.6936 7.3722 22 7 1.5874 0.1588 8.7393 23 8 1.1728 0.8847 9.6251 24 8 1.8464 -1.0070 8.9783 25 6 2.2326 1.9866 7.1941 26 6 2.4150 2.4866 5.9172 27 9 2.8664 3.7480 5.7428 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1409 -1.1384 35 1 3.6754 3.5159 -4.4440 36 1 0.9445 1.0115 2.5302 37 1 2.6228 0.4187 2.5299 38 1 1.4504 -0.2255 4.1424 39 1 1.8457 -2.1768 6.6231 40 1 0.3489 -1.5445 7.3498 41 1 0.4371 -1.8234 5.5940 42 1 2.4507 2.6051 8.0522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186731419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:19 Heat of formation + Delta-G solvation = -109.367165 kcal Electronic energy + Delta-G solvation = -29231.116175 eV Core-core repulsion = 24708.284906 eV Total energy + Delta-G solvation = -4522.831269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.19978 -43.37908 -41.79374 -40.60684 -39.01410 -37.72316 -37.05019 -34.95807 -33.92719 -32.58972 -31.70271 -30.61870 -28.71199 -28.55272 -26.69014 -25.01156 -24.36674 -23.74803 -23.18040 -20.60140 -20.27159 -19.85853 -19.55490 -18.99210 -18.65732 -18.08987 -17.77625 -17.55666 -17.47609 -17.04418 -16.77315 -16.29067 -15.96197 -15.66373 -15.10311 -14.85824 -14.80671 -14.66095 -14.33004 -14.21150 -14.00941 -13.62582 -13.33914 -13.30891 -13.20816 -13.08825 -12.82969 -12.70948 -12.66903 -12.50813 -12.45822 -12.28703 -12.16923 -12.12124 -11.87373 -11.74496 -10.75624 -10.66116 -10.42469 -9.87134 -9.54651 -8.25191 -6.39651 -1.22637 -0.48332 -0.05330 0.22037 1.25148 1.35607 1.39012 1.48547 1.62005 1.82062 2.31765 2.44725 2.70452 3.04980 3.07567 3.19481 3.26711 3.44570 3.75821 3.87947 3.92537 3.93624 4.17831 4.18184 4.30309 4.41730 4.48482 4.64009 4.64438 4.76034 4.88453 4.92215 4.98975 5.05104 5.05902 5.19253 5.26907 5.42487 5.52862 5.71412 5.81901 6.02078 6.43794 6.61802 6.71033 7.21850 7.36144 8.82139 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.002437 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.710484 B =11486.413986 C =12093.630507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.587 6.587 15 C 0.043 3.957 16 O -0.301 6.301 17 C 0.151 3.849 18 C -0.171 4.171 19 C 0.026 3.974 20 C -0.129 4.129 21 C -0.072 4.072 22 N 0.034 4.966 23 O -0.193 6.193 24 O -0.135 6.135 25 C -0.048 4.048 26 C 0.050 3.950 27 F -0.132 7.132 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.030 0.970 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.204 0.796 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -14.890 19.188 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.030 4.030 3 N -0.326 5.326 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.034 4.034 16 O -0.212 6.212 17 C 0.102 3.898 18 C -0.189 4.189 19 C 0.024 3.976 20 C -0.185 4.185 21 C -0.156 4.156 22 N 0.554 4.446 23 O -0.401 6.401 24 O -0.359 6.359 25 C -0.068 4.068 26 C 0.029 3.971 27 F -0.110 7.110 28 H 0.054 0.946 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.221 0.779 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.275 -13.637 18.273 23.933 hybrid contribution 1.000 0.938 -0.377 1.422 sum -6.275 -12.699 17.896 22.823 Atomic orbital electron populations 1.22214 0.94277 1.03977 1.01907 1.21961 0.95523 0.80555 1.04992 1.48201 1.63454 1.15509 1.05400 1.18760 0.95517 0.91560 0.80104 1.21710 0.97891 1.32086 1.06478 0.92502 1.25845 1.02279 0.94484 0.96560 1.70042 1.37804 1.34143 1.14815 0.85438 0.79092 0.78192 0.78231 1.18579 1.21006 1.19783 1.20696 0.78357 0.86664 0.86174 1.90727 1.47468 1.20691 1.87812 1.23060 1.05989 0.92732 0.81586 1.86298 1.81032 1.42035 1.11879 1.19573 0.92932 0.93213 0.84057 1.21430 1.05279 0.93398 0.98818 1.19895 0.90980 0.97344 0.89380 1.21244 1.03296 0.88819 1.05136 1.20475 1.17262 0.96082 0.81747 1.43512 0.97607 1.00574 1.02918 1.94588 1.48097 1.57284 1.40139 1.94513 1.52011 1.01406 1.87949 1.20568 0.95813 0.93512 0.96914 1.16672 1.07638 0.81497 0.91311 1.91568 1.86974 1.36562 1.95920 0.94589 0.87980 0.91687 0.90448 0.86867 0.95247 0.98727 0.92415 0.84023 0.84313 0.77889 0.87120 0.91328 0.86557 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.24 71.98 0.74 -2.18 16 2 C 0.09 2.09 5.93 86.38 0.51 2.60 16 3 N -0.59 -22.15 2.46 -826.13 -2.03 -24.17 16 4 C 0.26 13.36 5.16 85.64 0.44 13.81 16 5 C -0.54 -30.01 9.39 25.60 0.24 -29.77 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -55.08 13.29 21.44 0.28 -54.80 16 9 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 C 0.49 18.63 7.75 87.66 0.68 19.31 16 14 O -0.59 -30.33 16.08 15.99 0.26 -30.08 16 15 C 0.04 0.92 3.77 71.24 0.27 1.19 16 16 O -0.30 -8.26 9.53 -74.00 -0.71 -8.97 16 17 C 0.15 3.03 6.69 22.53 0.15 3.18 16 18 C -0.17 -1.89 8.67 22.36 0.19 -1.70 16 19 C 0.03 0.31 5.87 -19.87 -0.12 0.19 16 20 C -0.13 -0.86 8.63 71.24 0.61 -0.24 16 21 C -0.07 -1.25 6.49 36.39 0.24 -1.01 16 22 N 0.03 0.70 4.14 -46.45 -0.19 0.51 16 23 O -0.19 -4.53 18.93 18.88 0.36 -4.18 16 24 O -0.13 -2.69 16.74 18.89 0.32 -2.37 16 25 C -0.05 -0.89 9.63 22.30 0.21 -0.67 16 26 C 0.05 1.10 7.31 22.45 0.16 1.27 16 27 F -0.13 -3.72 17.11 44.97 0.77 -2.95 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 0.95 7.22 -2.39 -0.02 0.94 16 31 H 0.08 1.99 8.07 -2.38 -0.02 1.97 16 32 H 0.11 1.45 6.44 -2.38 -0.02 1.44 16 33 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 34 H -0.01 -0.33 7.42 -2.38 -0.02 -0.35 16 35 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.14 1.69 6.71 -2.39 -0.02 1.68 16 37 H 0.14 1.78 6.92 -2.39 -0.02 1.77 16 38 H 0.20 0.50 6.30 -2.91 -0.02 0.49 16 39 H 0.11 0.60 8.13 -2.39 -0.02 0.58 16 40 H 0.07 0.65 6.90 -2.39 -0.02 0.63 16 41 H 0.12 0.07 8.05 -2.39 -0.02 0.05 16 42 H 0.17 2.77 8.00 -2.91 -0.02 2.74 16 Total: -1.00 -82.73 370.75 6.95 -75.77 By element: Atomic # 1 Polarization: -2.49 SS G_CDS: 1.07 Total: -1.42 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.80 Total: 6.85 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.94 Total: -78.47 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: 0.23 Total: -45.59 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.77 Total: -2.95 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -82.73 6.95 -75.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186731419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.593 kcal (2) G-P(sol) polarization free energy of solvation -82.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds