Wall clock time and date at job start Tue Mar 31 2020 23:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00134 * 2 1 4 4 O 1.21602 * 119.99859 * 0.02562 * 3 2 1 5 5 C 1.47503 * 120.00490 * 179.97438 * 3 2 1 6 6 C 1.39696 * 120.19691 * 5.17093 * 5 3 2 7 7 C 1.37795 * 119.92085 * 180.25237 * 6 5 3 8 8 C 1.38571 * 120.33706 * 359.74854 * 7 6 5 9 9 C 1.38010 * 120.40770 * 359.97240 * 8 7 6 10 10 C 1.38874 * 120.06738 * 0.02562 * 9 8 7 11 11 N 1.39198 * 120.16538 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00127 * 324.57683 * 11 10 9 13 13 O 1.21588 * 119.99670 * 4.39271 * 12 11 10 14 14 C 1.47483 * 119.99886 * 184.38793 * 12 11 10 15 15 C 1.39694 * 120.20009 * 0.02562 * 14 12 11 16 16 C 1.37818 * 119.91564 * 180.22909 * 15 14 12 17 17 C 1.38588 * 120.32496 * 359.47147 * 16 15 14 18 18 C 1.38016 * 120.40539 * 0.55097 * 17 16 15 19 19 C 1.38834 * 120.07575 * 359.70467 * 18 17 16 20 20 O 1.35521 * 120.15985 * 180.02562 * 19 18 17 21 21 C 1.34804 * 117.00412 * 354.56841 * 20 19 18 22 22 H 1.07997 * 119.99967 * 5.04328 * 21 20 19 23 23 C 1.38697 * 120.00356 * 185.03708 * 21 20 19 24 24 N 1.31520 * 120.00448 * 180.02562 * 23 21 20 25 25 Si 1.86810 * 119.99802 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.46909 * 89.99931 * 25 23 21 27 27 H 1.48496 * 109.46870 * 209.99988 * 25 23 21 28 28 H 1.48496 * 109.46725 * 329.99765 * 25 23 21 29 29 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46805 * 299.99317 * 1 2 3 31 31 H 1.08997 * 109.47062 * 59.99884 * 1 2 3 32 32 H 0.97003 * 120.00251 * 180.02562 * 2 1 3 33 33 H 1.07993 * 120.04307 * 359.97363 * 6 5 3 34 34 H 1.07996 * 119.83311 * 179.75846 * 7 6 5 35 35 H 1.07999 * 119.79694 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.96601 * 180.02562 * 9 8 7 37 37 H 0.97004 * 119.99815 * 144.58025 * 11 10 9 38 38 H 1.07997 * 120.03892 * 359.95657 * 15 14 12 39 39 H 1.08000 * 119.83861 * 179.72550 * 16 15 14 40 40 H 1.08003 * 119.79521 * 180.28255 * 17 16 15 41 41 H 1.08007 * 119.96599 * 179.72434 * 18 17 16 42 42 H 0.97000 * 119.99860 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2203 0.0005 5 6 3.6139 1.1673 0.0006 6 6 4.3167 -0.0352 -0.1077 7 6 5.6946 -0.0290 -0.1013 8 6 6.3886 1.1655 0.0068 9 6 5.7083 2.3619 0.1087 10 6 4.3196 2.3753 0.1040 11 7 3.6313 3.5808 0.2072 12 6 4.1220 4.5732 0.9759 13 8 5.2043 4.4461 1.5151 14 6 3.3460 5.8134 1.1628 15 6 2.1019 5.9637 0.5455 16 6 1.3839 7.1270 0.7204 17 6 1.8850 8.1458 1.5151 18 6 3.1129 8.0118 2.1309 19 6 3.8527 6.8492 1.9620 20 8 5.0583 6.7155 2.5662 21 6 5.5348 7.7901 3.2261 22 1 4.9259 8.6765 3.3252 23 6 6.8069 7.7574 3.7778 24 7 7.2715 8.8056 4.4220 25 14 7.8603 6.2243 3.6058 26 1 8.6707 6.3172 2.3649 27 1 8.7632 6.1099 4.7793 28 1 6.9844 5.0271 3.5366 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.7807 -0.9690 -0.1918 34 1 6.2364 -0.9598 -0.1812 35 1 7.4686 1.1602 0.0113 36 1 6.2564 3.2887 0.1923 37 1 2.7985 3.7065 -0.2740 38 1 1.7052 5.1710 -0.0714 39 1 0.4242 7.2436 0.2390 40 1 1.3131 9.0520 1.6499 41 1 3.4986 8.8121 2.7451 42 1 8.1613 8.7827 4.8075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194132709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:12 Heat of formation + Delta-G solvation = -50.204172 kcal Electronic energy + Delta-G solvation = -29066.663377 eV Core-core repulsion = 24977.166833 eV Total energy + Delta-G solvation = -4089.496544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10407 -41.13353 -40.13404 -38.97522 -38.21839 -36.23213 -35.30927 -34.55119 -32.57079 -32.40384 -30.87259 -30.36438 -27.84046 -27.32118 -25.27664 -24.61483 -23.65260 -22.72829 -21.89567 -21.40949 -19.86660 -19.66854 -19.12643 -18.25157 -18.06053 -17.15235 -16.73759 -16.50644 -16.23129 -16.15413 -16.09325 -15.88507 -15.61061 -15.53267 -15.26572 -15.01937 -14.52718 -14.35306 -14.27544 -14.09439 -14.08579 -13.51080 -13.19654 -13.13827 -13.05530 -12.87182 -12.63798 -12.54606 -12.43599 -12.05403 -11.58286 -11.53117 -11.04176 -10.99546 -10.70928 -10.29822 -10.00244 -9.93417 -9.29472 -9.12332 -8.60651 -6.29794 -0.31386 -0.03493 0.37025 0.58189 1.22304 1.27659 1.55733 1.78606 1.85551 2.07320 2.18521 2.27548 2.70166 2.83933 2.94296 3.09479 3.68612 3.72193 3.79501 3.94255 4.08900 4.19351 4.35099 4.37722 4.41998 4.44940 4.49148 4.56777 4.65904 4.74271 4.86786 4.97111 4.98894 5.13708 5.22907 5.27135 5.36413 5.42330 5.45338 5.50604 5.55156 5.64134 5.78934 5.93378 6.08706 6.39534 6.49945 6.75507 7.09224 7.20708 7.53043 8.49596 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.004145 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.736124 B = 6752.899969 C = 8877.466220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.712 5.712 3 C 0.558 3.442 4 O -0.575 6.575 5 C -0.189 4.189 6 C -0.053 4.053 7 C -0.137 4.137 8 C -0.073 4.073 9 C -0.166 4.166 10 C 0.186 3.814 11 N -0.656 5.656 12 C 0.553 3.447 13 O -0.545 6.545 14 C -0.238 4.238 15 C -0.031 4.031 16 C -0.189 4.189 17 C -0.035 4.035 18 C -0.247 4.247 19 C 0.169 3.831 20 O -0.207 6.207 21 C -0.405 4.405 22 H 0.094 0.906 23 C 0.028 3.972 24 N -0.909 5.909 25 Si 0.955 3.045 26 H -0.273 1.273 27 H -0.264 1.264 28 H -0.268 1.268 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.419 0.581 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.109 0.891 37 H 0.425 0.575 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.122 0.878 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 -22.645 -13.342 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.364 5.364 3 C 0.347 3.653 4 O -0.457 6.457 5 C -0.195 4.195 6 C -0.072 4.072 7 C -0.155 4.155 8 C -0.092 4.092 9 C -0.187 4.187 10 C 0.088 3.912 11 N -0.306 5.306 12 C 0.345 3.655 13 O -0.424 6.424 14 C -0.243 4.243 15 C -0.049 4.049 16 C -0.207 4.207 17 C -0.053 4.053 18 C -0.266 4.266 19 C 0.115 3.885 20 O -0.110 6.110 21 C -0.481 4.481 22 H 0.112 0.888 23 C -0.173 4.173 24 N -0.548 5.548 25 Si 0.778 3.222 26 H -0.199 1.199 27 H -0.188 1.188 28 H -0.192 1.192 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.257 0.743 33 H 0.193 0.807 34 H 0.189 0.811 35 H 0.164 0.836 36 H 0.127 0.873 37 H 0.269 0.731 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.176 0.824 41 H 0.140 0.860 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.108 -22.042 -12.795 28.216 hybrid contribution 0.719 0.231 0.292 0.810 sum -11.388 -21.810 -12.503 27.599 Atomic orbital electron populations 1.21735 0.77932 1.04592 1.01687 1.45531 1.08623 1.07933 1.74334 1.18256 0.86907 0.84433 0.75701 1.90586 1.70408 1.32448 1.52241 1.19849 0.92923 0.93289 1.13420 1.21557 0.94808 0.96174 0.94632 1.21488 0.94074 0.98789 1.01176 1.21577 1.01488 0.91543 0.94605 1.21355 0.92838 1.00466 1.03995 1.18058 0.91627 0.85183 0.96285 1.43583 1.27582 1.11969 1.47512 1.18578 0.85301 0.83723 0.77891 1.90814 1.22139 1.80599 1.48804 1.19100 1.00123 0.94993 1.10055 1.21275 0.90373 0.98331 0.94948 1.21203 1.02470 0.93424 1.03616 1.21483 0.92535 0.99367 0.91885 1.21355 0.98523 0.98560 1.08191 1.19641 0.85545 0.93659 0.89614 1.83754 1.30329 1.37447 1.59516 1.20924 1.01234 0.93234 1.32727 0.88842 1.25040 0.96997 1.00311 0.94914 1.69678 1.19491 1.30131 1.35496 0.85427 0.78458 0.80314 0.77960 1.19872 1.18841 1.19235 0.86610 0.93452 0.92495 0.74339 0.80728 0.81057 0.83568 0.87252 0.73056 0.83509 0.81696 0.82436 0.85979 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.70 127.77 1.37 2.27 16 2 N -0.71 -9.60 5.66 -487.80 -2.76 -12.36 16 3 C 0.56 13.19 7.75 86.69 0.67 13.87 16 4 O -0.58 -17.48 13.90 -4.04 -0.06 -17.53 16 5 C -0.19 -4.64 5.89 -19.98 -0.12 -4.76 16 6 C -0.05 -0.81 9.52 22.52 0.21 -0.59 16 7 C -0.14 -2.14 10.02 22.24 0.22 -1.91 16 8 C -0.07 -1.72 10.03 22.29 0.22 -1.50 16 9 C -0.17 -5.59 8.67 22.37 0.19 -5.40 16 10 C 0.19 6.20 6.30 38.62 0.24 6.44 16 11 N -0.66 -24.33 4.61 -305.85 -1.41 -25.74 16 12 C 0.55 25.37 7.60 86.68 0.66 26.03 16 13 O -0.55 -29.41 12.62 16.90 0.21 -29.20 16 14 C -0.24 -10.61 5.89 -19.99 -0.12 -10.73 16 15 C -0.03 -1.05 9.53 22.52 0.21 -0.83 16 16 C -0.19 -5.54 10.03 22.25 0.22 -5.32 16 17 C -0.03 -1.14 10.03 22.30 0.22 -0.92 16 18 C -0.25 -10.99 9.16 22.36 0.20 -10.78 16 19 C 0.17 8.65 6.66 22.91 0.15 8.80 16 20 O -0.21 -12.39 6.67 0.93 0.01 -12.38 16 21 C -0.41 -25.16 9.95 67.93 0.68 -24.49 16 22 H 0.09 5.84 5.44 -2.91 -0.02 5.82 16 23 C 0.03 1.72 5.49 84.85 0.47 2.19 16 24 N -0.91 -55.94 13.96 21.62 0.30 -55.64 16 25 Si 0.95 51.22 28.62 68.60 1.96 53.18 16 26 H -0.27 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.27 -15.54 7.11 99.48 0.71 -14.83 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.42 2.45 6.89 -92.71 -0.64 1.81 16 33 H 0.18 0.84 6.44 -2.91 -0.02 0.82 16 34 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.11 4.52 6.25 -2.91 -0.02 4.50 16 37 H 0.42 14.17 4.39 -92.71 -0.41 13.76 16 38 H 0.15 4.20 6.41 -2.91 -0.02 4.18 16 39 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.12 5.79 5.64 -2.91 -0.02 5.77 16 42 H 0.29 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -87.10 357.00 4.04 -83.05 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.06 Total: 24.25 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.72 Total: -7.64 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -3.87 Total: -93.74 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: 0.16 Total: -59.11 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 1.96 Total: 53.18 kcal Total: -87.10 4.04 -83.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194132709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.849 kcal (2) G-P(sol) polarization free energy of solvation -87.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds