Wall clock time and date at job start Tue Mar 31 2020 23:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35944 * 119.60962 * 2 1 4 4 C 1.35916 * 120.59354 * 180.30356 * 3 2 1 5 5 N 1.40293 * 120.09406 * 179.69545 * 4 3 2 6 6 C 1.34770 * 120.00077 * 238.43722 * 5 4 3 7 7 O 1.21750 * 120.00330 * 355.04914 * 6 5 4 8 8 C 1.46232 * 120.00104 * 175.04882 * 6 5 4 9 9 C 1.35029 * 119.99876 * 186.67377 * 8 6 5 10 10 C 1.46958 * 120.00441 * 15.11851 * 9 8 6 11 11 C 1.40027 * 120.09822 * 38.35747 * 10 9 8 12 12 C 1.37595 * 119.89711 * 180.02562 * 11 10 9 13 13 C 1.39186 * 120.09859 * 0.27150 * 12 11 10 14 14 O 1.35572 * 119.89299 * 179.70443 * 13 12 11 15 15 C 1.34779 * 117.00499 * 6.39433 * 14 13 12 16 16 H 1.07996 * 119.99938 * 5.73982 * 15 14 13 17 17 C 1.38714 * 119.99988 * 185.74211 * 15 14 13 18 18 N 1.31517 * 119.99591 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00239 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46752 * 90.00114 * 19 17 15 21 21 H 1.48498 * 109.47150 * 209.99819 * 19 17 15 22 22 H 1.48496 * 109.46999 * 330.00019 * 19 17 15 23 23 C 1.39174 * 120.20165 * 359.45137 * 13 12 11 24 24 C 1.37592 * 120.10231 * 0.54963 * 23 13 12 25 25 C 1.40649 * 119.81871 * 359.43013 * 4 3 2 26 26 C 1.36350 * 119.24051 * 0.26436 * 25 4 3 27 27 C 1.34639 * 119.60769 * 179.70408 * 2 1 3 28 28 O 1.22099 * 119.92005 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47151 * 180.29882 * 1 2 3 30 30 H 1.09000 * 109.47124 * 300.29756 * 1 2 3 31 31 H 1.09002 * 109.47249 * 60.29959 * 1 2 3 32 32 H 1.08003 * 119.70607 * 0.02828 * 3 2 1 33 33 H 0.96999 * 119.99699 * 58.42763 * 5 4 3 34 34 H 1.07994 * 119.99799 * 6.66938 * 8 6 5 35 35 H 1.08001 * 119.99778 * 195.11470 * 9 8 6 36 36 H 1.07998 * 120.05228 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.95419 * 179.97438 * 12 11 10 38 38 H 0.97003 * 119.99198 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.94197 * 180.27974 * 23 13 12 40 40 H 1.08000 * 120.05071 * 179.75302 * 24 23 13 41 41 H 1.08003 * 120.37826 * 180.29980 * 25 4 3 42 42 H 1.08002 * 120.29537 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1819 0.0000 4 6 3.4956 1.2053 -0.0062 5 7 4.1781 2.4310 -0.0126 6 6 5.0352 2.7198 -1.0117 7 8 5.2859 1.8830 -1.8597 8 6 5.6640 4.0384 -1.0773 9 6 6.4155 4.3755 -2.1474 10 6 6.3396 3.5779 -3.3793 11 6 5.1094 3.0657 -3.8096 12 6 5.0432 2.3190 -4.9634 13 6 6.1975 2.0677 -5.6994 14 8 6.1284 1.3264 -6.8324 15 6 4.8994 0.9762 -7.2606 16 1 4.0232 1.3621 -6.7610 17 6 4.7599 0.1201 -8.3431 18 7 3.5606 -0.2220 -8.7606 19 14 6.2754 -0.5468 -9.2079 20 1 6.6884 -1.8224 -8.5694 21 1 5.9625 -0.7883 -10.6393 22 1 7.3800 0.4400 -9.1023 23 6 7.4214 2.5796 -5.2787 24 6 7.4972 3.3273 -4.1262 25 6 4.2159 -0.0028 -0.0005 26 6 3.5351 -1.1841 0.0056 27 6 2.1302 -1.1706 0.0060 28 8 1.5110 -2.2229 0.0110 29 1 -0.3633 -1.0277 0.0054 30 1 -0.3633 0.5184 0.8873 31 1 -0.3634 0.5092 -0.8927 32 1 1.5855 2.1107 0.0005 33 1 4.0330 3.0706 0.7021 34 1 5.5273 4.7426 -0.2700 35 1 7.0723 5.2314 -2.0979 36 1 4.2141 3.2558 -3.2363 37 1 4.0950 1.9232 -5.2959 38 1 3.4631 -0.8209 -9.5174 39 1 8.3137 2.3859 -5.8555 40 1 8.4480 3.7208 -3.7983 41 1 5.2959 0.0052 -0.0005 42 1 4.0710 -2.1218 0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255232390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:55 Heat of formation + Delta-G solvation = 9.085244 kcal Electronic energy + Delta-G solvation = -28351.507588 eV Core-core repulsion = 24264.582026 eV Total energy + Delta-G solvation = -4086.925562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50817 -39.97452 -38.97661 -37.30849 -36.55452 -35.28056 -33.56456 -33.12075 -32.31561 -30.22701 -29.55604 -28.34714 -27.54646 -25.35304 -24.24336 -23.62947 -22.50371 -21.77113 -20.97579 -19.48543 -18.01730 -17.97556 -17.73580 -17.40002 -16.81905 -16.75442 -16.07932 -15.49941 -15.08582 -14.71866 -14.38796 -14.33556 -14.21970 -13.80447 -13.72423 -13.47154 -13.44348 -13.19803 -12.99337 -12.80988 -12.54158 -12.34112 -12.26389 -12.19077 -11.82768 -11.49702 -11.00602 -10.82261 -10.72259 -10.30577 -10.16744 -10.07997 -9.75848 -9.51966 -9.46073 -9.33819 -8.78712 -8.06784 -7.88928 -7.05420 -6.45631 -4.08997 0.66944 1.01566 1.65428 2.26055 2.38115 2.57827 3.21261 3.21442 3.25938 3.39146 3.41620 3.56751 4.21623 4.32431 4.55266 4.58585 4.80332 4.84595 4.85391 4.94943 5.02967 5.08430 5.10641 5.19336 5.40948 5.47374 5.60569 5.65453 5.69785 5.85592 5.95768 6.13019 6.13983 6.23078 6.29557 6.47605 6.58414 6.62104 6.86341 6.88493 7.10970 7.23985 7.35452 7.42727 7.62147 7.79937 7.90554 8.01893 8.34667 8.89093 9.52054 10.61526 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.003563 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.213335 B = 7856.373896 C =10132.623478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.493 5.493 3 C 0.113 3.887 4 C 0.048 3.952 5 N -0.677 5.677 6 C 0.542 3.458 7 O -0.497 6.497 8 C -0.273 4.273 9 C 0.035 3.965 10 C -0.190 4.190 11 C 0.017 3.983 12 C -0.233 4.233 13 C 0.179 3.821 14 O -0.209 6.209 15 C -0.387 4.387 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.874 5.874 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.258 1.258 23 C -0.211 4.211 24 C -0.043 4.043 25 C -0.001 4.001 26 C -0.231 4.231 27 C 0.513 3.487 28 O -0.555 6.555 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.405 0.595 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.281 0.719 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 9.949 21.075 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.204 5.204 3 C -0.016 4.016 4 C -0.050 4.050 5 N -0.328 5.328 6 C 0.333 3.667 7 O -0.371 6.371 8 C -0.294 4.294 9 C 0.016 3.984 10 C -0.191 4.191 11 C -0.002 4.002 12 C -0.252 4.252 13 C 0.125 3.875 14 O -0.113 6.113 15 C -0.463 4.463 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.510 5.510 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.230 4.230 24 C -0.062 4.062 25 C -0.023 4.023 26 C -0.253 4.253 27 C 0.315 3.685 28 O -0.438 6.438 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.181 0.819 33 H 0.241 0.759 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.982 8.442 20.080 21.804 hybrid contribution 0.283 0.081 0.045 0.297 sum -0.699 8.522 20.125 21.867 Atomic orbital electron populations 1.22203 0.76992 1.06382 1.03119 1.45162 1.09223 1.06283 1.59772 1.21705 0.92605 0.89990 0.97331 1.16611 0.89295 0.86956 1.12136 1.43254 1.44967 1.16966 1.27607 1.18657 0.78401 0.89254 0.80392 1.91036 1.59397 1.49374 1.37312 1.22452 1.08510 0.96423 1.02030 1.22358 0.90626 0.94808 0.90643 1.18368 0.94267 1.08992 0.97453 1.20638 0.95555 0.91506 0.92499 1.21080 0.99264 1.06547 0.98285 1.19325 0.93452 0.89438 0.85240 1.83516 1.32665 1.60303 1.34801 1.20826 0.81673 1.28936 1.14825 0.87532 1.24512 0.97887 0.95345 0.96246 1.69631 1.21641 1.33608 1.26168 0.86174 0.82486 0.80016 0.78232 1.19769 1.20656 1.18229 1.20009 0.95885 1.06757 1.00352 1.20665 0.96461 0.96149 0.92885 1.21535 1.01250 0.90917 0.88643 1.22017 0.92515 0.99874 1.10930 1.17174 0.89384 0.82746 0.79208 1.90955 1.69790 1.29546 1.53531 0.87769 0.90392 0.90109 0.81942 0.75946 0.85726 0.85760 0.88263 0.85259 0.90911 0.86573 0.86883 0.84503 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 10.58 59.85 0.63 1.07 16 2 N -0.49 -5.45 2.99 -126.99 -0.38 -5.83 16 3 C 0.11 1.03 10.27 -16.56 -0.17 0.86 16 4 C 0.05 0.51 5.74 -83.91 -0.48 0.03 16 5 N -0.68 -6.18 5.28 -11.32 -0.06 -6.24 16 6 C 0.54 6.90 6.45 -13.05 -0.08 6.82 16 7 O -0.50 -8.83 11.44 5.14 0.06 -8.77 16 8 C -0.27 -2.84 9.85 -37.51 -0.37 -3.21 16 9 C 0.04 0.42 9.82 -37.19 -0.37 0.06 16 10 C -0.19 -3.18 4.65 -105.03 -0.49 -3.67 16 11 C 0.02 0.32 6.62 -39.15 -0.26 0.06 16 12 C -0.23 -5.29 9.10 -39.46 -0.36 -5.65 16 13 C 0.18 4.27 6.66 -38.88 -0.26 4.01 16 14 O -0.21 -5.64 8.57 0.74 0.01 -5.64 16 15 C -0.39 -11.13 9.89 30.91 0.31 -10.82 16 16 H 0.11 3.15 5.53 -52.49 -0.29 2.86 16 17 C 0.06 1.83 5.49 -17.51 -0.10 1.73 16 18 N -0.87 -25.51 13.96 55.48 0.77 -24.74 16 19 Si 0.91 21.94 28.62 -169.99 -4.86 17.08 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.21 -4.27 9.97 -39.47 -0.39 -4.66 16 24 C -0.04 -0.74 9.78 -39.15 -0.38 -1.12 16 25 C 0.00 -0.01 8.94 -39.35 -0.35 -0.36 16 26 C -0.23 -3.12 9.98 -39.41 -0.39 -3.51 16 27 C 0.51 7.50 7.41 -15.47 -0.11 7.38 16 28 O -0.56 -9.91 16.38 4.83 0.08 -9.83 16 29 H 0.10 1.01 6.85 -51.93 -0.36 0.65 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.40 2.11 8.81 -40.82 -0.36 1.75 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.10 1.76 6.72 -52.49 -0.35 1.41 16 37 H 0.13 3.14 5.71 -52.49 -0.30 2.84 16 38 H 0.28 7.55 8.31 -40.82 -0.34 7.22 16 39 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.14 1.68 7.98 -52.48 -0.42 1.26 16 42 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -36.50 364.29 -7.12 -43.61 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.59 Total: 5.87 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.63 Total: -10.99 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.34 Total: -36.81 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.14 Total: -24.24 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.50 -7.12 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255232390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.700 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds