Wall clock time and date at job start Tue Mar 31 2020 23:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35944 * 119.60962 * 2 1 4 4 C 1.35916 * 120.59354 * 180.30356 * 3 2 1 5 5 N 1.40293 * 120.09406 * 179.69545 * 4 3 2 6 6 C 1.34770 * 120.00077 * 238.43722 * 5 4 3 7 7 O 1.21750 * 120.00330 * 355.04914 * 6 5 4 8 8 C 1.46232 * 120.00104 * 175.04882 * 6 5 4 9 9 C 1.35029 * 119.99876 * 186.67377 * 8 6 5 10 10 C 1.46958 * 120.00441 * 15.11851 * 9 8 6 11 11 C 1.40027 * 120.09822 * 38.35747 * 10 9 8 12 12 C 1.37595 * 119.89711 * 180.02562 * 11 10 9 13 13 C 1.39186 * 120.09859 * 0.27150 * 12 11 10 14 14 O 1.35572 * 119.89299 * 179.70443 * 13 12 11 15 15 C 1.34779 * 117.00499 * 6.39433 * 14 13 12 16 16 H 1.07996 * 119.99938 * 5.73982 * 15 14 13 17 17 C 1.38714 * 119.99988 * 185.74211 * 15 14 13 18 18 N 1.31517 * 119.99591 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00239 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46752 * 90.00114 * 19 17 15 21 21 H 1.48498 * 109.47150 * 209.99819 * 19 17 15 22 22 H 1.48496 * 109.46999 * 330.00019 * 19 17 15 23 23 C 1.39174 * 120.20165 * 359.45137 * 13 12 11 24 24 C 1.37592 * 120.10231 * 0.54963 * 23 13 12 25 25 C 1.40649 * 119.81871 * 359.43013 * 4 3 2 26 26 C 1.36350 * 119.24051 * 0.26436 * 25 4 3 27 27 C 1.34639 * 119.60769 * 179.70408 * 2 1 3 28 28 O 1.22099 * 119.92005 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47151 * 180.29882 * 1 2 3 30 30 H 1.09000 * 109.47124 * 300.29756 * 1 2 3 31 31 H 1.09002 * 109.47249 * 60.29959 * 1 2 3 32 32 H 1.08003 * 119.70607 * 0.02828 * 3 2 1 33 33 H 0.96999 * 119.99699 * 58.42763 * 5 4 3 34 34 H 1.07994 * 119.99799 * 6.66938 * 8 6 5 35 35 H 1.08001 * 119.99778 * 195.11470 * 9 8 6 36 36 H 1.07998 * 120.05228 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.95419 * 179.97438 * 12 11 10 38 38 H 0.97003 * 119.99198 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.94197 * 180.27974 * 23 13 12 40 40 H 1.08000 * 120.05071 * 179.75302 * 24 23 13 41 41 H 1.08003 * 120.37826 * 180.29980 * 25 4 3 42 42 H 1.08002 * 120.29537 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1819 0.0000 4 6 3.4956 1.2053 -0.0062 5 7 4.1781 2.4310 -0.0126 6 6 5.0352 2.7198 -1.0117 7 8 5.2859 1.8830 -1.8597 8 6 5.6640 4.0384 -1.0773 9 6 6.4155 4.3755 -2.1474 10 6 6.3396 3.5779 -3.3793 11 6 5.1094 3.0657 -3.8096 12 6 5.0432 2.3190 -4.9634 13 6 6.1975 2.0677 -5.6994 14 8 6.1284 1.3264 -6.8324 15 6 4.8994 0.9762 -7.2606 16 1 4.0232 1.3621 -6.7610 17 6 4.7599 0.1201 -8.3431 18 7 3.5606 -0.2220 -8.7606 19 14 6.2754 -0.5468 -9.2079 20 1 6.6884 -1.8224 -8.5694 21 1 5.9625 -0.7883 -10.6393 22 1 7.3800 0.4400 -9.1023 23 6 7.4214 2.5796 -5.2787 24 6 7.4972 3.3273 -4.1262 25 6 4.2159 -0.0028 -0.0005 26 6 3.5351 -1.1841 0.0056 27 6 2.1302 -1.1706 0.0060 28 8 1.5110 -2.2229 0.0110 29 1 -0.3633 -1.0277 0.0054 30 1 -0.3633 0.5184 0.8873 31 1 -0.3634 0.5092 -0.8927 32 1 1.5855 2.1107 0.0005 33 1 4.0330 3.0706 0.7021 34 1 5.5273 4.7426 -0.2700 35 1 7.0723 5.2314 -2.0979 36 1 4.2141 3.2558 -3.2363 37 1 4.0950 1.9232 -5.2959 38 1 3.4631 -0.8209 -9.5174 39 1 8.3137 2.3859 -5.8555 40 1 8.4480 3.7208 -3.7983 41 1 5.2959 0.0052 -0.0005 42 1 4.0710 -2.1218 0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255232390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:54 Heat of formation + Delta-G solvation = -17.004736 kcal Electronic energy + Delta-G solvation = -28352.638935 eV Core-core repulsion = 24264.582026 eV Total energy + Delta-G solvation = -4088.056909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.48727 -41.18701 -40.53217 -38.61044 -37.91829 -36.30177 -34.65742 -34.54778 -34.01488 -31.80229 -30.63046 -29.59810 -28.47059 -27.23496 -25.31950 -24.65130 -23.81669 -23.21631 -22.24300 -20.53178 -19.87954 -19.25097 -18.91411 -18.60107 -17.98157 -17.82655 -17.04580 -16.71795 -16.45445 -16.05044 -15.88568 -15.73399 -15.56914 -15.27987 -15.13016 -14.66339 -14.52817 -14.31266 -14.22278 -14.11420 -13.94128 -13.84677 -13.59502 -13.21965 -13.09776 -12.75537 -12.66658 -12.47974 -12.30840 -11.95304 -11.35916 -11.24836 -11.17399 -11.05343 -10.80984 -10.53107 -10.37023 -9.61355 -8.87280 -8.57860 -8.54537 -6.25347 -0.25609 -0.08071 0.62654 0.70540 1.12991 1.27111 1.34165 1.48643 1.51306 2.24751 2.32071 2.42642 2.58873 2.78904 3.11328 3.19239 3.59894 3.70440 3.85304 3.96995 4.05202 4.09432 4.16167 4.23266 4.37571 4.41461 4.55610 4.66769 4.70017 4.73983 4.76463 4.92630 4.99629 5.03549 5.21400 5.25851 5.30229 5.34749 5.50779 5.66520 5.69448 5.77362 5.86884 5.89940 5.92350 6.28006 6.64821 6.79674 6.84572 7.42744 7.55355 8.57447 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.003563 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.213335 B = 7856.373896 C =10132.623478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.489 5.489 3 C 0.139 3.861 4 C 0.025 3.975 5 N -0.649 5.649 6 C 0.530 3.470 7 O -0.556 6.556 8 C -0.229 4.229 9 C 0.010 3.990 10 C -0.157 4.157 11 C 0.011 3.989 12 C -0.254 4.254 13 C 0.131 3.869 14 O -0.243 6.243 15 C -0.399 4.399 16 H 0.075 0.925 17 C 0.009 3.991 18 N -0.923 5.923 19 Si 0.972 3.028 20 H -0.270 1.270 21 H -0.262 1.262 22 H -0.259 1.259 23 C -0.212 4.212 24 C -0.044 4.044 25 C 0.008 3.992 26 C -0.265 4.265 27 C 0.497 3.503 28 O -0.604 6.604 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.215 0.785 33 H 0.430 0.570 34 H 0.184 0.816 35 H 0.175 0.825 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.285 0.715 39 H 0.127 0.873 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 14.467 24.870 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.198 5.198 3 C 0.009 3.991 4 C -0.073 4.073 5 N -0.301 5.301 6 C 0.322 3.678 7 O -0.434 6.434 8 C -0.249 4.249 9 C -0.009 4.009 10 C -0.157 4.157 11 C -0.007 4.007 12 C -0.274 4.274 13 C 0.082 3.918 14 O -0.150 6.150 15 C -0.476 4.476 16 H 0.092 0.908 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.794 3.206 20 H -0.195 1.195 21 H -0.187 1.187 22 H -0.183 1.183 23 C -0.231 4.231 24 C -0.062 4.062 25 C -0.016 4.016 26 C -0.287 4.287 27 C 0.301 3.699 28 O -0.492 6.492 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.231 0.769 33 H 0.271 0.729 34 H 0.201 0.799 35 H 0.193 0.807 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.182 0.818 41 H 0.152 0.848 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.619 13.050 23.977 27.305 hybrid contribution -0.249 -0.983 -0.534 1.146 sum 0.369 12.067 23.443 26.369 Atomic orbital electron populations 1.22494 0.74859 1.05883 1.05996 1.45311 1.10728 1.06007 1.57782 1.22387 0.92388 0.90704 0.93606 1.16690 0.90119 0.86951 1.13503 1.42970 1.43348 1.16454 1.27329 1.19350 0.78464 0.89901 0.80119 1.91058 1.61482 1.51247 1.39634 1.22984 1.03951 0.95178 1.02836 1.22644 0.93146 0.96299 0.88845 1.18983 0.92672 1.05586 0.98498 1.20794 0.97604 0.91209 0.91094 1.21026 0.97763 1.08385 1.00191 1.19885 0.95362 0.90908 0.85649 1.83453 1.30966 1.63403 1.37182 1.20679 0.81988 1.29519 1.15392 0.90779 1.25337 1.00968 0.95675 0.96927 1.69719 1.23478 1.35547 1.27574 0.85201 0.78572 0.79005 0.77821 1.19499 1.18653 1.18296 1.20391 0.94727 1.06385 1.01619 1.21247 0.98801 0.94741 0.91383 1.21625 1.01238 0.91484 0.87236 1.21963 0.92561 1.00414 1.13796 1.17351 0.89762 0.83315 0.79440 1.90915 1.70604 1.31331 1.56349 0.90098 0.86258 0.88331 0.76851 0.72940 0.79919 0.80735 0.87017 0.88905 0.90507 0.85462 0.81840 0.84831 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.58 127.77 1.35 2.02 16 2 N -0.49 -10.15 2.99 -673.82 -2.01 -12.16 16 3 C 0.14 2.04 10.27 83.52 0.86 2.89 16 4 C 0.02 0.46 5.74 37.84 0.22 0.68 16 5 N -0.65 -8.59 5.28 -307.92 -1.63 -10.21 16 6 C 0.53 11.03 6.45 86.32 0.56 11.59 16 7 O -0.56 -18.66 11.44 -4.51 -0.05 -18.71 16 8 C -0.23 -3.05 9.85 23.61 0.23 -2.82 16 9 C 0.01 0.17 9.82 23.82 0.23 0.40 16 10 C -0.16 -4.67 4.65 -20.13 -0.09 -4.77 16 11 C 0.01 0.43 6.62 22.55 0.15 0.58 16 12 C -0.25 -12.35 9.10 22.35 0.20 -12.14 16 13 C 0.13 6.62 6.66 22.72 0.15 6.77 16 14 O -0.24 -14.07 8.57 -20.26 -0.17 -14.24 16 15 C -0.40 -25.05 9.89 67.93 0.67 -24.38 16 16 H 0.07 4.93 5.53 -2.91 -0.02 4.91 16 17 C 0.01 0.57 5.49 84.85 0.47 1.03 16 18 N -0.92 -57.61 13.96 21.62 0.30 -57.31 16 19 Si 0.97 47.63 28.62 68.60 1.96 49.60 16 20 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 23 C -0.21 -8.52 9.97 22.34 0.22 -8.30 16 24 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 25 C 0.01 0.19 8.94 22.42 0.20 0.39 16 26 C -0.27 -7.61 9.98 22.38 0.22 -7.38 16 27 C 0.50 15.15 7.41 84.81 0.63 15.78 16 28 O -0.60 -23.14 16.38 -5.64 -0.09 -23.23 16 29 H 0.08 1.58 6.85 -2.39 -0.02 1.57 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.21 0.93 8.06 -2.91 -0.02 0.90 16 33 H 0.43 1.52 8.81 -92.71 -0.82 0.70 16 34 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.11 3.81 6.72 -2.91 -0.02 3.79 16 37 H 0.09 5.08 5.71 -2.91 -0.02 5.06 16 38 H 0.29 16.28 8.31 -92.71 -0.77 15.51 16 39 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.13 3.29 7.98 -2.91 -0.02 3.27 16 42 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -93.72 364.29 5.06 -88.66 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.26 Total: 16.41 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 6.49 Total: -18.80 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.34 Total: -79.68 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.32 Total: -56.19 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.96 Total: 49.60 kcal Total: -93.72 5.06 -88.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255232390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.655 kcal (2) G-P(sol) polarization free energy of solvation -93.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds