Wall clock time and date at job start Tue Mar 31 2020 23:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36046 * 116.99769 * 2 1 4 4 C 1.38610 * 119.99034 * 359.97438 * 3 2 1 5 5 C 1.38295 * 120.05068 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.98265 * 179.97438 * 5 4 3 7 7 C 1.39104 * 120.02664 * 359.97438 * 5 4 3 8 8 N 1.39944 * 120.00933 * 179.97438 * 7 5 4 9 9 C 1.34771 * 119.99809 * 204.85051 * 8 7 5 10 10 O 1.21400 * 120.00228 * 5.53980 * 9 8 7 11 11 C 1.49322 * 119.99920 * 185.53175 * 9 8 7 12 12 O 1.21356 * 119.99952 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99692 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99739 * 179.97438 * 13 11 9 15 15 C 1.52991 * 109.47180 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99704 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00004 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00209 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99963 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47399 * 90.00107 * 20 18 16 22 22 H 1.48500 * 109.47073 * 210.00191 * 20 18 16 23 23 H 1.48504 * 109.47441 * 330.00308 * 20 18 16 24 24 C 1.38847 * 119.97582 * 0.02562 * 7 5 4 25 25 C 1.38475 * 119.95446 * 0.02562 * 24 7 5 26 26 O 1.36031 * 120.01543 * 179.97438 * 25 24 7 27 27 C 1.42897 * 117.00062 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47005 * 299.99844 * 1 2 3 30 30 H 1.08998 * 109.47061 * 59.99991 * 1 2 3 31 31 H 1.08003 * 119.97318 * 0.27763 * 4 3 2 32 32 H 0.97000 * 119.99983 * 24.85970 * 8 7 5 33 33 H 0.96998 * 120.00350 * 359.97438 * 13 11 9 34 34 H 1.09006 * 109.47203 * 300.00099 * 14 13 11 35 35 H 1.09001 * 109.47257 * 59.99674 * 14 13 11 36 36 H 1.09002 * 109.47391 * 299.99710 * 15 14 13 37 37 H 1.08999 * 109.47517 * 60.00176 * 15 14 13 38 38 H 0.96997 * 120.00421 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.02352 * 180.02562 * 24 7 5 40 40 H 1.09010 * 109.47025 * 179.97438 * 27 26 25 41 41 H 1.09000 * 109.47360 * 299.99818 * 27 26 25 42 42 H 1.09001 * 109.47147 * 60.00684 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 1.2914 2.3745 -0.0005 5 6 1.9179 3.6074 -0.0011 6 9 1.1805 4.7394 -0.0021 7 6 3.3069 3.6824 -0.0005 8 7 3.9405 4.9302 -0.0016 9 6 5.1901 5.0510 -0.4917 10 8 5.7281 4.1013 -1.0233 11 6 5.9130 6.3529 -0.3810 12 8 5.3753 7.3021 0.1507 13 7 7.1625 6.4737 -0.8716 14 6 7.8714 7.7512 -0.7634 15 6 9.2595 7.6190 -1.3929 16 6 9.9891 8.9330 -1.2811 17 1 9.5103 9.7779 -0.8087 18 6 11.2674 9.0567 -1.7829 19 7 11.9038 10.2034 -1.6858 20 14 12.0952 7.5954 -2.6006 21 1 11.7909 7.6035 -4.0540 22 1 13.5642 7.6837 -2.4019 23 1 11.5886 6.3372 -1.9959 24 6 4.0645 2.5188 0.0000 25 6 3.4362 1.2847 -0.0005 26 8 4.1772 0.1439 -0.0005 27 6 5.5983 0.2934 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2129 2.3173 0.0036 32 1 3.4803 5.7081 0.3505 33 1 7.5923 5.7149 -1.2962 34 1 7.3077 8.5249 -1.2849 35 1 7.9737 8.0222 0.2874 36 1 9.8230 6.8455 -0.8710 37 1 9.1577 7.3479 -2.4437 38 1 12.8032 10.2904 -2.0384 39 1 5.1430 2.5761 0.0008 40 1 6.0672 -0.6907 -0.0001 41 1 5.9060 0.8424 -0.8905 42 1 5.9059 0.8423 0.8895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273110793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:57 Heat of formation + Delta-G solvation = -151.799441 kcal Electronic energy + Delta-G solvation = -28745.730414 eV Core-core repulsion = 24221.059144 eV Total energy + Delta-G solvation = -4524.671271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.25794 -41.42516 -40.54515 -38.96149 -38.71032 -37.20536 -35.54275 -34.55498 -32.87960 -30.57914 -30.39494 -30.04378 -27.68908 -27.52465 -26.02800 -24.13788 -23.01491 -22.33537 -20.98514 -20.46036 -19.40197 -18.71069 -18.22509 -17.51624 -17.16569 -16.87978 -16.63316 -16.48667 -16.12693 -15.73816 -15.71803 -15.59748 -15.10200 -14.99422 -14.86084 -14.45721 -14.23470 -14.00349 -13.60630 -13.32784 -13.10867 -12.90966 -12.66822 -12.61295 -12.13759 -11.92460 -11.82555 -11.60809 -11.53005 -11.44972 -11.31260 -10.51298 -10.39422 -10.28643 -10.01597 -9.63329 -9.39867 -9.02089 -8.90682 -8.66425 -7.95631 -6.16668 -4.17880 0.54774 0.67321 1.40200 2.09739 2.78419 2.86495 2.96684 3.22440 3.22709 3.30942 3.31532 3.48974 3.74535 4.16739 4.33240 4.38949 4.53729 4.60903 4.71663 4.73461 4.83729 4.96135 5.01072 5.07638 5.16160 5.23977 5.29661 5.44847 5.61324 5.75995 5.87015 6.01886 6.20880 6.34151 6.40284 6.56340 6.65668 6.97098 7.08869 7.11112 7.29570 7.54468 7.60334 8.01692 8.36542 8.86368 9.42843 10.95985 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002214 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.983332 B =12646.376607 C =13905.381399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.299 6.299 3 C 0.111 3.889 4 C -0.187 4.187 5 C 0.075 3.925 6 F -0.131 7.131 7 C 0.126 3.874 8 N -0.639 5.639 9 C 0.512 3.488 10 O -0.500 6.500 11 C 0.502 3.498 12 O -0.521 6.521 13 N -0.686 5.686 14 C 0.126 3.874 15 C -0.023 4.023 16 C -0.525 4.525 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.162 4.162 25 C 0.117 3.883 26 O -0.300 6.300 27 C 0.022 3.978 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.153 0.847 32 H 0.428 0.572 33 H 0.410 0.590 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.266 0.734 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.484 -22.081 4.172 31.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.213 6.213 3 C 0.064 3.936 4 C -0.207 4.207 5 C 0.053 3.947 6 F -0.110 7.110 7 C 0.030 3.970 8 N -0.286 5.286 9 C 0.295 3.705 10 O -0.374 6.374 11 C 0.281 3.719 12 O -0.398 6.398 13 N -0.337 5.337 14 C 0.005 3.995 15 C -0.061 4.061 16 C -0.564 4.564 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.183 4.183 25 C 0.070 3.930 26 O -0.213 6.213 27 C -0.073 4.073 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.171 0.829 32 H 0.267 0.733 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.189 0.811 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.217 -22.248 4.134 31.712 hybrid contribution 0.309 -0.034 -0.519 0.605 sum -21.908 -22.282 3.615 31.456 Atomic orbital electron populations 1.23141 0.78272 1.04346 1.01470 1.86228 1.21236 1.25002 1.88792 1.17878 0.88858 0.84895 1.01943 1.20746 1.01068 0.89590 1.09295 1.16849 0.86630 0.82535 1.08708 1.91508 1.76510 1.48671 1.94309 1.17328 0.89386 0.85841 1.04474 1.43044 1.15616 1.09951 1.59995 1.20677 0.81828 0.89925 0.78075 1.90706 1.66448 1.39961 1.40302 1.19602 0.83509 0.87505 0.81308 1.90788 1.66803 1.39223 1.42982 1.46209 1.13933 1.16985 1.56618 1.21779 0.93747 0.81901 1.02072 1.19828 0.91062 0.99237 0.95989 1.20858 0.99736 0.96025 1.39761 0.90507 1.24990 0.97045 0.95809 0.95347 1.69892 1.13116 1.24373 1.46003 0.86764 0.78773 0.83464 0.80173 1.20143 1.21199 1.18994 1.21239 1.02484 0.88693 1.05852 1.18025 0.88081 0.86073 1.00842 1.86184 1.19290 1.27290 1.88570 1.23184 0.77793 1.04188 1.02111 0.87890 0.92454 0.92456 0.82897 0.73277 0.75476 0.91036 0.91015 0.95688 0.96113 0.92452 0.81145 0.87858 0.91783 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.82 10.28 -34.53 -0.35 -3.17 16 3 C 0.11 1.12 6.70 -39.10 -0.26 0.86 16 4 C -0.19 -1.64 9.01 -39.42 -0.36 -2.00 16 5 C 0.07 0.77 7.30 -39.24 -0.29 0.48 16 6 F -0.13 -1.37 16.80 2.25 0.04 -1.33 16 7 C 0.13 1.43 6.44 -83.61 -0.54 0.89 16 8 N -0.64 -7.50 5.29 -10.23 -0.05 -7.55 16 9 C 0.51 6.86 7.69 -11.65 -0.09 6.77 16 10 O -0.50 -7.03 13.64 5.45 0.07 -6.96 16 11 C 0.50 7.72 7.88 -11.64 -0.09 7.62 16 12 O -0.52 -9.11 16.48 5.49 0.09 -9.02 16 13 N -0.69 -10.90 5.55 -60.77 -0.34 -11.24 16 14 C 0.13 2.40 5.61 -4.04 -0.02 2.38 16 15 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 16 C -0.53 -14.23 9.66 -34.44 -0.33 -14.57 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 20 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 24 C -0.16 -1.83 7.70 -39.27 -0.30 -2.14 16 25 C 0.12 1.29 6.70 -39.15 -0.26 1.03 16 26 O -0.30 -3.27 10.28 -34.48 -0.35 -3.62 16 27 C 0.02 0.18 9.81 101.05 0.99 1.17 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 31 H 0.15 0.92 6.29 -52.48 -0.33 0.59 16 32 H 0.43 4.60 7.93 -40.82 -0.32 4.27 16 33 H 0.41 5.88 7.94 -40.82 -0.32 5.55 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.02 0.54 7.20 -51.93 -0.37 0.16 16 37 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.17 1.97 4.02 -52.49 -0.21 1.76 16 40 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 42 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -32.32 364.89 -4.89 -37.21 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.82 Total: 5.29 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.77 Total: 4.85 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.38 Total: -44.74 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.54 Total: -22.77 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.32 -4.89 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273110793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.590 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds