Wall clock time and date at job start Tue Mar 31 2020 23:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36046 * 116.99769 * 2 1 4 4 C 1.38610 * 119.99034 * 359.97438 * 3 2 1 5 5 C 1.38295 * 120.05068 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.98265 * 179.97438 * 5 4 3 7 7 C 1.39104 * 120.02664 * 359.97438 * 5 4 3 8 8 N 1.39944 * 120.00933 * 179.97438 * 7 5 4 9 9 C 1.34771 * 119.99809 * 204.85051 * 8 7 5 10 10 O 1.21400 * 120.00228 * 5.53980 * 9 8 7 11 11 C 1.49322 * 119.99920 * 185.53175 * 9 8 7 12 12 O 1.21356 * 119.99952 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99692 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99739 * 179.97438 * 13 11 9 15 15 C 1.52991 * 109.47180 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99704 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00004 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00209 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99963 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47399 * 90.00107 * 20 18 16 22 22 H 1.48500 * 109.47073 * 210.00191 * 20 18 16 23 23 H 1.48504 * 109.47441 * 330.00308 * 20 18 16 24 24 C 1.38847 * 119.97582 * 0.02562 * 7 5 4 25 25 C 1.38475 * 119.95446 * 0.02562 * 24 7 5 26 26 O 1.36031 * 120.01543 * 179.97438 * 25 24 7 27 27 C 1.42897 * 117.00062 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47005 * 299.99844 * 1 2 3 30 30 H 1.08998 * 109.47061 * 59.99991 * 1 2 3 31 31 H 1.08003 * 119.97318 * 0.27763 * 4 3 2 32 32 H 0.97000 * 119.99983 * 24.85970 * 8 7 5 33 33 H 0.96998 * 120.00350 * 359.97438 * 13 11 9 34 34 H 1.09006 * 109.47203 * 300.00099 * 14 13 11 35 35 H 1.09001 * 109.47257 * 59.99674 * 14 13 11 36 36 H 1.09002 * 109.47391 * 299.99710 * 15 14 13 37 37 H 1.08999 * 109.47517 * 60.00176 * 15 14 13 38 38 H 0.96997 * 120.00421 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.02352 * 180.02562 * 24 7 5 40 40 H 1.09010 * 109.47025 * 179.97438 * 27 26 25 41 41 H 1.09000 * 109.47360 * 299.99818 * 27 26 25 42 42 H 1.09001 * 109.47147 * 60.00684 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 1.2914 2.3745 -0.0005 5 6 1.9179 3.6074 -0.0011 6 9 1.1805 4.7394 -0.0021 7 6 3.3069 3.6824 -0.0005 8 7 3.9405 4.9302 -0.0016 9 6 5.1901 5.0510 -0.4917 10 8 5.7281 4.1013 -1.0233 11 6 5.9130 6.3529 -0.3810 12 8 5.3753 7.3021 0.1507 13 7 7.1625 6.4737 -0.8716 14 6 7.8714 7.7512 -0.7634 15 6 9.2595 7.6190 -1.3929 16 6 9.9891 8.9330 -1.2811 17 1 9.5103 9.7779 -0.8087 18 6 11.2674 9.0567 -1.7829 19 7 11.9038 10.2034 -1.6858 20 14 12.0952 7.5954 -2.6006 21 1 11.7909 7.6035 -4.0540 22 1 13.5642 7.6837 -2.4019 23 1 11.5886 6.3372 -1.9959 24 6 4.0645 2.5188 0.0000 25 6 3.4362 1.2847 -0.0005 26 8 4.1772 0.1439 -0.0005 27 6 5.5983 0.2934 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2129 2.3173 0.0036 32 1 3.4803 5.7081 0.3505 33 1 7.5923 5.7149 -1.2962 34 1 7.3077 8.5249 -1.2849 35 1 7.9737 8.0222 0.2874 36 1 9.8230 6.8455 -0.8710 37 1 9.1577 7.3479 -2.4437 38 1 12.8032 10.2904 -2.0384 39 1 5.1430 2.5761 0.0008 40 1 6.0672 -0.6907 -0.0001 41 1 5.9060 0.8424 -0.8905 42 1 5.9059 0.8423 0.8895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273110793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:56 Heat of formation + Delta-G solvation = -175.799684 kcal Electronic energy + Delta-G solvation = -28746.771143 eV Core-core repulsion = 24221.059144 eV Total energy + Delta-G solvation = -4525.711999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.06061 -42.38433 -41.44445 -40.04205 -39.48271 -38.08229 -36.94803 -35.59516 -34.78415 -32.17759 -31.29214 -30.83349 -28.39519 -28.11591 -27.48984 -25.44357 -23.82063 -23.29583 -22.64684 -21.57887 -20.33905 -19.59630 -19.13000 -18.97988 -18.36959 -17.93805 -17.46339 -17.42908 -17.16804 -16.70699 -16.56639 -16.26928 -16.22109 -16.16974 -15.96152 -15.62246 -15.47683 -15.25960 -14.73464 -14.60790 -14.44265 -13.74392 -13.65262 -13.41478 -13.37212 -13.08183 -12.94246 -12.61873 -12.47791 -12.36159 -12.22647 -12.18110 -12.12076 -11.78159 -11.51192 -11.09548 -10.82279 -10.79111 -10.31020 -9.81654 -8.74221 -8.29962 -6.36958 -0.36285 -0.08913 0.36484 1.00428 1.40173 1.41558 1.52545 1.89192 2.15467 2.21540 2.34088 2.36460 2.38938 2.96560 3.05338 3.18634 3.47378 3.78021 3.91340 4.11867 4.24535 4.32054 4.33379 4.37262 4.38213 4.44212 4.52740 4.63788 4.71851 4.73734 4.79835 4.84629 4.92490 4.93761 5.27240 5.36947 5.40411 5.57645 5.66557 5.94392 6.13895 6.21893 6.39643 6.47090 6.69834 6.78896 7.27625 8.86207 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002214 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.983332 B =12646.376607 C =13905.381399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.111 3.889 4 C -0.176 4.176 5 C 0.075 3.925 6 F -0.132 7.132 7 C 0.107 3.893 8 N -0.630 5.630 9 C 0.521 3.479 10 O -0.506 6.506 11 C 0.507 3.493 12 O -0.543 6.543 13 N -0.681 5.681 14 C 0.141 3.859 15 C -0.017 4.017 16 C -0.536 4.536 17 H 0.036 0.964 18 C 0.006 3.994 19 N -0.948 5.948 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.238 1.238 24 C -0.166 4.166 25 C 0.103 3.897 26 O -0.315 6.315 27 C 0.018 3.982 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.183 0.817 32 H 0.432 0.568 33 H 0.420 0.580 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.268 0.732 39 H 0.167 0.833 40 H 0.125 0.875 41 H 0.059 0.941 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.906 -25.022 3.712 34.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.064 3.936 4 C -0.196 4.196 5 C 0.053 3.947 6 F -0.111 7.111 7 C 0.011 3.989 8 N -0.276 5.276 9 C 0.303 3.697 10 O -0.381 6.381 11 C 0.287 3.713 12 O -0.421 6.421 13 N -0.333 5.333 14 C 0.018 3.982 15 C -0.055 4.055 16 C -0.574 4.574 17 H 0.054 0.946 18 C -0.191 4.191 19 N -0.588 5.588 20 Si 0.776 3.224 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.161 1.161 24 C -0.187 4.187 25 C 0.056 3.944 26 O -0.228 6.228 27 C -0.077 4.077 28 H 0.139 0.861 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.200 0.800 32 H 0.272 0.728 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.184 0.816 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.688 -25.225 3.684 34.799 hybrid contribution 0.606 0.870 -0.313 1.106 sum -23.082 -24.355 3.370 33.724 Atomic orbital electron populations 1.23487 0.75960 1.06093 1.02748 1.86216 1.23679 1.24701 1.88519 1.18025 0.88764 0.85640 1.01133 1.20988 1.02424 0.88408 1.07749 1.16941 0.86222 0.83024 1.08534 1.91509 1.76425 1.48846 1.94315 1.17442 0.89951 0.85415 1.06049 1.42918 1.14926 1.10492 1.59300 1.20102 0.82297 0.88734 0.78556 1.90714 1.66772 1.39711 1.40923 1.19877 0.83094 0.88054 0.80300 1.90780 1.67255 1.40311 1.43788 1.45932 1.14181 1.16155 1.57044 1.21332 0.92645 0.83135 1.01052 1.19698 0.92005 0.96604 0.97207 1.21201 1.00203 0.97212 1.38826 0.94613 1.26013 0.97887 0.99062 0.96172 1.70057 1.13744 1.27144 1.47815 0.85620 0.77252 0.80224 0.79311 1.19191 1.21316 1.16116 1.21181 1.02316 0.88927 1.06249 1.18228 0.88838 0.86026 1.01262 1.86163 1.20562 1.27475 1.88603 1.23366 0.76621 1.05612 1.02073 0.86114 0.91017 0.91221 0.79993 0.72808 0.74258 0.92067 0.91965 0.94385 0.94648 0.92349 0.81636 0.85655 0.92249 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.34 10.28 -80.07 -0.82 -6.16 16 3 C 0.11 2.05 6.70 22.58 0.15 2.20 16 4 C -0.18 -2.67 9.01 22.37 0.20 -2.47 16 5 C 0.07 1.41 7.30 22.49 0.16 1.57 16 6 F -0.13 -2.53 16.80 44.97 0.76 -1.77 16 7 C 0.11 2.32 6.44 38.20 0.25 2.56 16 8 N -0.63 -14.17 5.29 -304.61 -1.61 -15.79 16 9 C 0.52 13.40 7.69 87.23 0.67 14.07 16 10 O -0.51 -13.60 13.64 -3.40 -0.05 -13.64 16 11 C 0.51 15.15 7.88 87.23 0.69 15.84 16 12 O -0.54 -18.80 16.48 -3.26 -0.05 -18.85 16 13 N -0.68 -20.79 5.55 -464.54 -2.58 -23.37 16 14 C 0.14 5.31 5.61 86.38 0.48 5.79 16 15 C -0.02 -0.74 4.16 29.85 0.12 -0.62 16 16 C -0.54 -29.51 9.66 25.60 0.25 -29.27 16 17 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 18 C 0.01 0.35 5.47 84.66 0.46 0.81 16 19 N -0.95 -57.99 13.96 21.45 0.30 -57.69 16 20 Si 0.95 41.79 27.47 68.60 1.88 43.68 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.24 -9.33 6.54 99.48 0.65 -8.67 16 24 C -0.17 -3.62 7.70 22.47 0.17 -3.44 16 25 C 0.10 2.19 6.70 22.55 0.15 2.34 16 26 O -0.31 -6.56 10.28 -79.90 -0.82 -7.38 16 27 C 0.02 0.26 9.81 113.37 1.11 1.37 16 28 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 30 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 31 H 0.18 1.57 6.29 -2.91 -0.02 1.55 16 32 H 0.43 8.92 7.93 -92.71 -0.73 8.19 16 33 H 0.42 11.19 7.94 -92.71 -0.74 10.45 16 34 H 0.06 2.42 8.14 -2.38 -0.02 2.41 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 37 H 0.04 1.42 7.57 -2.39 -0.02 1.40 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.17 3.71 4.02 -2.91 -0.01 3.70 16 40 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 42 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 Total: -1.00 -70.52 364.89 2.58 -67.94 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.42 Total: 21.10 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.99 Total: 11.94 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.89 Total: -96.85 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.74 Total: -46.04 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.76 Total: -1.77 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.68 kcal Total: -70.52 2.58 -67.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273110793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.862 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds