Wall clock time and date at job start Tue Mar 31 2020 23:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47170 * 2 1 4 4 C 1.46507 * 119.99991 * 270.00351 * 3 2 1 5 5 C 1.50691 * 109.46975 * 269.99896 * 4 3 2 6 6 H 1.08001 * 120.00371 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99993 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00006 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00198 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47038 * 89.99863 * 9 7 5 11 11 H 1.48498 * 109.47138 * 210.00393 * 9 7 5 12 12 H 1.48499 * 109.46865 * 330.00320 * 9 7 5 13 13 C 1.34776 * 120.00156 * 89.99759 * 3 2 1 14 14 O 1.21284 * 120.00188 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99734 * 0.02562 * 13 3 2 16 16 C 1.50702 * 109.46948 * 179.97438 * 15 13 3 17 17 C 1.38330 * 119.98592 * 96.26675 * 16 15 13 18 18 F 1.35103 * 120.04957 * 0.02562 * 17 16 15 19 19 C 1.38908 * 119.90526 * 180.27637 * 17 16 15 20 20 O 1.35955 * 120.06558 * 179.74615 * 19 17 16 21 21 C 1.42899 * 116.99948 * 179.72164 * 20 19 17 22 22 C 1.38661 * 119.87114 * 359.46740 * 19 17 16 23 23 C 1.38178 * 119.97334 * 0.25594 * 22 19 17 24 24 C 1.38251 * 119.98231 * 275.99142 * 16 15 13 25 25 N 1.48002 * 119.94090 * 359.97438 * 24 16 15 26 26 O 1.21799 * 120.00546 * 186.37516 * 25 24 16 27 27 O 1.21807 * 119.99816 * 6.37975 * 25 24 16 28 28 H 1.08994 * 109.46810 * 299.99506 * 1 2 3 29 29 H 1.08995 * 109.47364 * 60.00319 * 1 2 3 30 30 H 1.09007 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46853 * 240.00187 * 2 1 3 32 32 H 1.08997 * 109.46909 * 120.00293 * 2 1 3 33 33 H 1.09001 * 109.47078 * 29.99630 * 4 3 2 34 34 H 1.08996 * 109.47104 * 149.99657 * 4 3 2 35 35 H 0.97005 * 120.00334 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47321 * 59.99080 * 15 13 3 37 37 H 1.09003 * 109.46681 * 299.99485 * 15 13 3 38 38 H 1.09001 * 109.46785 * 299.99747 * 21 20 19 39 39 H 1.09002 * 109.46831 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47414 * 59.99799 * 21 20 19 41 41 H 1.07994 * 120.01475 * 180.23453 * 22 19 17 42 42 H 1.07995 * 119.95732 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1489 2.3896 -2.8781 8 7 3.3489 3.1257 -3.6181 9 14 5.9134 2.0967 -3.4171 10 1 5.9774 0.8753 -4.2593 11 1 6.3919 3.2640 -4.2005 12 1 6.7735 1.9180 -2.2198 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3192 2.2291 3.6177 17 6 1.3132 2.9559 4.2287 18 9 0.0375 2.8384 3.7996 19 6 1.6172 3.8106 5.2806 20 8 0.6318 4.5304 5.8800 21 6 1.0169 5.3843 6.9592 22 6 2.9268 3.9240 5.7219 23 6 3.9268 3.1913 5.1116 24 6 3.6235 2.3449 4.0611 25 7 4.6973 1.5613 3.4104 26 8 5.8244 1.5723 3.8717 27 8 4.4537 0.9055 2.4132 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6749 3.5162 -4.4441 36 1 2.6227 0.4187 2.5298 37 1 0.9444 1.0115 2.5301 38 1 1.4671 4.7871 7.7521 39 1 0.1376 5.8987 7.3469 40 1 1.7395 6.1179 6.6019 41 1 3.1652 4.5850 6.5420 42 1 4.9467 3.2795 5.4558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412172877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:09 Heat of formation + Delta-G solvation = -81.118377 kcal Electronic energy + Delta-G solvation = -30860.105763 eV Core-core repulsion = 26338.499453 eV Total energy + Delta-G solvation = -4521.606310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.16533 -42.13816 -40.54986 -39.24461 -37.93619 -36.43689 -35.25935 -33.11160 -32.51862 -31.38011 -30.04684 -29.13940 -27.92941 -26.55050 -25.81830 -23.25231 -22.95157 -22.65157 -21.87117 -19.40178 -18.78374 -18.65599 -18.18149 -17.46470 -17.23782 -16.70869 -16.60043 -16.43708 -16.16452 -15.64625 -15.40169 -15.22146 -14.55584 -14.38772 -14.02425 -13.79212 -13.37782 -13.31489 -13.12258 -12.88990 -12.59757 -12.44428 -12.00659 -11.94320 -11.81802 -11.78528 -11.51707 -11.24073 -11.09804 -10.93331 -10.81993 -10.72490 -10.52308 -10.39464 -10.03918 -9.58173 -9.51005 -9.00242 -8.86304 -8.34361 -7.61271 -5.95301 -3.98657 -0.19166 0.46238 1.27838 1.47033 2.45018 2.82235 3.38433 3.41333 3.44872 3.53522 3.61830 3.85081 4.04806 4.19154 4.24071 4.53787 4.57263 4.60707 4.62852 4.81498 4.96981 5.09925 5.23428 5.24948 5.36453 5.37201 5.39711 5.48490 5.66842 5.72434 5.76184 5.86719 6.10940 6.30376 6.47675 6.55303 6.61938 7.11093 7.50389 7.61621 7.82356 8.02406 8.33332 8.44861 8.97558 9.13195 9.66154 11.12941 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003877 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.886291 B = 7221.186346 C = 7979.489725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.588 5.588 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.529 3.471 14 O -0.545 6.545 15 C -0.131 4.131 16 C 0.016 3.984 17 C 0.078 3.922 18 F -0.112 7.112 19 C 0.150 3.850 20 O -0.297 6.297 21 C 0.020 3.980 22 C -0.191 4.191 23 C -0.019 4.019 24 C -0.044 4.044 25 N 0.037 4.963 26 O -0.168 6.168 27 O -0.138 6.138 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.160 0.840 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 -1.424 23.215 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.318 5.318 4 C 0.129 3.871 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.315 3.685 14 O -0.424 6.424 15 C -0.170 4.170 16 C 0.013 3.987 17 C 0.058 3.942 18 F -0.091 7.091 19 C 0.102 3.898 20 O -0.209 6.209 21 C -0.074 4.074 22 C -0.210 4.210 23 C -0.038 4.038 24 C -0.128 4.128 25 N 0.556 4.444 26 O -0.381 6.381 27 O -0.356 6.356 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.083 0.917 41 H 0.177 0.823 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.786 -0.317 23.280 24.251 hybrid contribution 1.146 -0.197 -0.512 1.271 sum -5.640 -0.515 22.768 23.462 Atomic orbital electron populations 1.22245 0.96867 1.01481 1.02310 1.21468 0.93300 0.84125 1.03126 1.48110 1.63224 1.13221 1.07294 1.19287 0.96468 0.93483 0.77856 1.21502 0.96890 1.31573 1.06062 0.91934 1.24926 0.97799 0.94989 0.96444 1.69940 1.35691 1.33782 1.14374 0.86521 0.84924 0.77550 0.78662 1.20623 1.21279 1.19648 1.19471 0.78432 0.86429 0.84162 1.90676 1.46453 1.18177 1.87057 1.21279 1.05317 0.99397 0.91031 1.19051 0.89890 0.95010 0.94710 1.16190 0.80303 1.00895 0.96855 1.91558 1.33964 1.94691 1.88862 1.19189 0.88673 0.90608 0.91364 1.86209 1.32430 1.54666 1.47576 1.23299 1.03515 0.93102 0.87509 1.21029 0.90263 1.05025 1.04693 1.20803 1.01679 0.90445 0.90874 1.20435 0.87229 1.03840 1.01261 1.43253 1.01496 0.99644 1.00024 1.94498 1.06935 1.69318 1.67314 1.94570 1.87516 1.40031 1.13438 0.93174 0.91976 0.92044 0.89602 0.91465 0.94903 0.94054 0.92881 0.84820 0.87530 0.91810 0.87239 0.91662 0.82263 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.10 1.73 5.93 -4.04 -0.02 1.70 16 3 N -0.59 -12.88 2.46 -175.06 -0.43 -13.31 16 4 C 0.25 6.66 5.16 -5.19 -0.03 6.63 16 5 C -0.52 -15.28 9.39 -34.44 -0.32 -15.61 16 6 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 9 Si 0.90 22.74 29.54 -169.99 -5.02 17.72 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.53 11.52 6.49 -10.98 -0.07 11.45 16 14 O -0.55 -14.25 15.61 5.55 0.09 -14.16 16 15 C -0.13 -2.12 3.53 -29.03 -0.10 -2.23 16 16 C 0.02 0.25 4.38 -104.58 -0.46 -0.21 16 17 C 0.08 1.11 7.25 -39.30 -0.28 0.83 16 18 F -0.11 -1.67 16.22 2.25 0.04 -1.63 16 19 C 0.15 1.70 6.69 -39.18 -0.26 1.44 16 20 O -0.30 -2.97 10.36 -19.60 -0.20 -3.17 16 21 C 0.02 0.10 9.81 101.05 0.99 1.09 16 22 C -0.19 -1.72 9.04 -39.45 -0.36 -2.08 16 23 C -0.02 -0.21 9.55 -39.59 -0.38 -0.59 16 24 C -0.04 -0.66 6.83 -79.94 -0.55 -1.21 16 25 N 0.04 0.66 4.45 33.97 0.15 0.81 16 26 O -0.17 -2.91 18.46 -29.46 -0.54 -3.46 16 27 O -0.14 -2.74 14.42 -29.46 -0.42 -3.16 16 28 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.47 8.07 -51.92 -0.42 1.05 16 32 H 0.07 0.94 6.44 -51.93 -0.33 0.61 16 33 H 0.03 0.88 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.13 2.04 5.05 -51.93 -0.26 1.78 16 37 H 0.11 1.45 6.51 -51.93 -0.34 1.11 16 38 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 41 H 0.16 0.78 6.30 -52.49 -0.33 0.45 16 42 H 0.16 1.43 7.62 -52.49 -0.40 1.03 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -37.22 364.45 -6.55 -43.77 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -4.87 Total: -3.19 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.56 Total: 0.93 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.46 Total: -39.14 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.08 Total: -23.95 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.22 -6.55 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412172877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.348 kcal (2) G-P(sol) polarization free energy of solvation -37.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds