Wall clock time and date at job start Tue Mar 31 2020 23:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47170 * 2 1 4 4 C 1.46507 * 119.99991 * 270.00351 * 3 2 1 5 5 C 1.50691 * 109.46975 * 269.99896 * 4 3 2 6 6 H 1.08001 * 120.00371 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99993 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00006 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 120.00198 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47038 * 89.99863 * 9 7 5 11 11 H 1.48498 * 109.47138 * 210.00393 * 9 7 5 12 12 H 1.48499 * 109.46865 * 330.00320 * 9 7 5 13 13 C 1.34776 * 120.00156 * 89.99759 * 3 2 1 14 14 O 1.21284 * 120.00188 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99734 * 0.02562 * 13 3 2 16 16 C 1.50702 * 109.46948 * 179.97438 * 15 13 3 17 17 C 1.38330 * 119.98592 * 96.26675 * 16 15 13 18 18 F 1.35103 * 120.04957 * 0.02562 * 17 16 15 19 19 C 1.38908 * 119.90526 * 180.27637 * 17 16 15 20 20 O 1.35955 * 120.06558 * 179.74615 * 19 17 16 21 21 C 1.42899 * 116.99948 * 179.72164 * 20 19 17 22 22 C 1.38661 * 119.87114 * 359.46740 * 19 17 16 23 23 C 1.38178 * 119.97334 * 0.25594 * 22 19 17 24 24 C 1.38251 * 119.98231 * 275.99142 * 16 15 13 25 25 N 1.48002 * 119.94090 * 359.97438 * 24 16 15 26 26 O 1.21799 * 120.00546 * 186.37516 * 25 24 16 27 27 O 1.21807 * 119.99816 * 6.37975 * 25 24 16 28 28 H 1.08994 * 109.46810 * 299.99506 * 1 2 3 29 29 H 1.08995 * 109.47364 * 60.00319 * 1 2 3 30 30 H 1.09007 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46853 * 240.00187 * 2 1 3 32 32 H 1.08997 * 109.46909 * 120.00293 * 2 1 3 33 33 H 1.09001 * 109.47078 * 29.99630 * 4 3 2 34 34 H 1.08996 * 109.47104 * 149.99657 * 4 3 2 35 35 H 0.97005 * 120.00334 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47321 * 59.99080 * 15 13 3 37 37 H 1.09003 * 109.46681 * 299.99485 * 15 13 3 38 38 H 1.09001 * 109.46785 * 299.99747 * 21 20 19 39 39 H 1.09002 * 109.46831 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.47414 * 59.99799 * 21 20 19 41 41 H 1.07994 * 120.01475 * 180.23453 * 22 19 17 42 42 H 1.07995 * 119.95732 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1489 2.3896 -2.8781 8 7 3.3489 3.1257 -3.6181 9 14 5.9134 2.0967 -3.4171 10 1 5.9774 0.8753 -4.2593 11 1 6.3919 3.2640 -4.2005 12 1 6.7735 1.9180 -2.2198 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9923 1.3059 2.4723 16 6 2.3192 2.2291 3.6177 17 6 1.3132 2.9559 4.2287 18 9 0.0375 2.8384 3.7996 19 6 1.6172 3.8106 5.2806 20 8 0.6318 4.5304 5.8800 21 6 1.0169 5.3843 6.9592 22 6 2.9268 3.9240 5.7219 23 6 3.9268 3.1913 5.1116 24 6 3.6235 2.3449 4.0611 25 7 4.6973 1.5613 3.4104 26 8 5.8244 1.5723 3.8717 27 8 4.4537 0.9055 2.4132 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6749 3.5162 -4.4441 36 1 2.6227 0.4187 2.5298 37 1 0.9444 1.0115 2.5301 38 1 1.4671 4.7871 7.7521 39 1 0.1376 5.8987 7.3469 40 1 1.7395 6.1179 6.6019 41 1 3.1652 4.5850 6.5420 42 1 4.9467 3.2795 5.4558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412172877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:08 Heat of formation + Delta-G solvation = -105.750350 kcal Electronic energy + Delta-G solvation = -30861.173885 eV Core-core repulsion = 26338.499453 eV Total energy + Delta-G solvation = -4522.674432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.23468 -43.38824 -41.46321 -40.78799 -38.94307 -37.76426 -36.99070 -34.98342 -33.97088 -32.34214 -31.64257 -30.33240 -29.03981 -28.00869 -26.94930 -25.04471 -24.30380 -23.80807 -23.13024 -20.62216 -20.09797 -19.83049 -19.26753 -18.78833 -18.58520 -18.32177 -17.93795 -17.66237 -17.41839 -17.18811 -16.42396 -16.30129 -16.05809 -15.99588 -15.11094 -14.82512 -14.74184 -14.58936 -14.45628 -14.20540 -13.80353 -13.64283 -13.54064 -13.26361 -13.25016 -12.99624 -12.69471 -12.66420 -12.51802 -12.41500 -12.37347 -12.29894 -12.18654 -11.99253 -11.76434 -11.69315 -10.88357 -10.63819 -10.31789 -9.87826 -9.47208 -8.22384 -6.35862 -1.33505 -0.47926 0.10991 0.32645 1.34834 1.37822 1.49426 1.69759 1.77290 1.87137 2.32127 2.45149 2.69480 2.98308 3.06847 3.24019 3.35787 3.56981 3.68316 3.82544 4.08808 4.21559 4.27144 4.27861 4.37263 4.41673 4.47027 4.50569 4.57127 4.63838 4.76502 4.85850 4.93815 4.96738 5.03963 5.19671 5.27737 5.37802 5.58851 5.83763 5.86742 6.07665 6.46986 6.67982 6.76273 7.26195 7.41675 8.84834 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003877 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.886291 B = 7221.186346 C = 7979.489725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.596 5.596 4 C 0.266 3.734 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.523 3.477 14 O -0.599 6.599 15 C -0.115 4.115 16 C -0.006 4.006 17 C 0.054 3.946 18 F -0.124 7.124 19 C 0.163 3.837 20 O -0.312 6.312 21 C 0.004 3.996 22 C -0.166 4.166 23 C -0.009 4.009 24 C -0.070 4.070 25 N 0.040 4.960 26 O -0.148 6.148 27 O -0.209 6.209 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.026 0.974 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.212 0.788 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 -1.218 26.375 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.326 5.326 4 C 0.145 3.855 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.311 3.689 14 O -0.481 6.481 15 C -0.155 4.155 16 C -0.009 4.009 17 C 0.033 3.967 18 F -0.102 7.102 19 C 0.113 3.887 20 O -0.224 6.224 21 C -0.089 4.089 22 C -0.185 4.185 23 C -0.028 4.028 24 C -0.155 4.155 25 N 0.552 4.448 26 O -0.370 6.370 27 O -0.411 6.411 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.109 0.891 39 H 0.145 0.855 40 H 0.098 0.902 41 H 0.229 0.771 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.446 -0.210 26.360 27.138 hybrid contribution 0.961 -0.077 -1.249 1.578 sum -5.485 -0.287 25.112 25.705 Atomic orbital electron populations 1.22169 0.94285 1.03756 1.01701 1.21801 0.95394 0.81298 1.04122 1.48138 1.63423 1.15060 1.05956 1.18704 0.95400 0.91324 0.80118 1.21706 0.97858 1.31816 1.06381 0.93098 1.25811 1.02267 0.94492 0.96384 1.70048 1.37675 1.34332 1.14800 0.85474 0.79210 0.78397 0.78127 1.18465 1.20357 1.20251 1.20350 0.76899 0.85983 0.85661 1.90618 1.48740 1.20706 1.88053 1.21096 1.06833 0.99296 0.88238 1.19024 0.90756 0.96069 0.95063 1.16437 0.79685 1.02165 0.98371 1.91517 1.34548 1.94905 1.89246 1.19314 0.89913 0.89328 0.90106 1.86223 1.32705 1.54711 1.48740 1.23782 1.05241 0.93185 0.86709 1.21569 0.88321 1.03922 1.04650 1.21282 1.03649 0.88732 0.89090 1.20699 0.86232 1.05498 1.03029 1.43621 1.02014 0.99456 0.99673 1.94433 1.07768 1.68274 1.66492 1.94570 1.87999 1.42966 1.15546 0.92421 0.93931 0.88231 0.90501 0.88580 0.95642 0.98692 0.92428 0.84034 0.85135 0.89095 0.85506 0.90212 0.77083 0.79206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 10.24 71.98 0.74 -3.62 16 2 C 0.10 3.26 5.93 86.38 0.51 3.77 16 3 N -0.60 -27.58 2.46 -826.15 -2.03 -29.61 16 4 C 0.27 15.25 5.16 85.63 0.44 15.69 16 5 C -0.54 -33.14 9.39 25.60 0.24 -32.90 16 6 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.55 5.46 84.66 0.46 1.02 16 8 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 9 Si 0.96 47.65 29.54 68.60 2.03 49.67 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 13 C 0.52 23.97 6.49 87.66 0.57 24.54 16 14 O -0.60 -33.31 15.61 -3.04 -0.05 -33.36 16 15 C -0.12 -3.86 3.53 29.10 0.10 -3.76 16 16 C -0.01 -0.20 4.38 -19.84 -0.09 -0.29 16 17 C 0.05 1.50 7.25 22.45 0.16 1.67 16 18 F -0.12 -3.68 16.22 44.97 0.73 -2.95 16 19 C 0.16 3.27 6.69 22.53 0.15 3.42 16 20 O -0.31 -5.26 10.36 -93.04 -0.96 -6.23 16 21 C 0.00 0.02 9.81 113.37 1.11 1.13 16 22 C -0.17 -2.28 9.04 22.36 0.20 -2.08 16 23 C -0.01 -0.17 9.55 22.26 0.21 0.05 16 24 C -0.07 -2.09 6.83 36.39 0.25 -1.84 16 25 N 0.04 1.43 4.45 -46.45 -0.21 1.22 16 26 O -0.15 -5.04 18.46 18.89 0.35 -4.69 16 27 O -0.21 -8.72 14.42 18.88 0.27 -8.45 16 28 H 0.06 1.47 7.22 -2.39 -0.02 1.45 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.08 2.72 8.07 -2.38 -0.02 2.70 16 32 H 0.10 2.69 6.44 -2.39 -0.02 2.67 16 33 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 34 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 35 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 36 H 0.14 4.48 5.05 -2.39 -0.01 4.47 16 37 H 0.13 3.56 6.51 -2.39 -0.02 3.54 16 38 H 0.09 0.02 7.66 -2.39 -0.02 0.00 16 39 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.08 0.23 7.66 -2.39 -0.02 0.21 16 41 H 0.21 0.64 6.30 -2.91 -0.02 0.63 16 42 H 0.19 2.57 7.62 -2.91 -0.02 2.55 16 Total: -1.00 -88.40 364.45 6.56 -81.84 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.08 Total: 3.82 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 5.07 Total: 6.80 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.95 Total: -86.45 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -0.39 Total: -52.72 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.73 Total: -2.95 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -88.40 6.56 -81.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412172877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.912 kcal (2) G-P(sol) polarization free energy of solvation -88.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds