Wall clock time and date at job start Tue Mar 31 2020 23:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35954 * 116.99352 * 2 1 4 4 C 1.38661 * 120.06733 * 359.97438 * 3 2 1 5 5 C 1.38182 * 119.97204 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.09449 * 0.02562 * 5 4 3 7 7 N 1.48000 * 119.93787 * 180.02562 * 6 5 4 8 8 O 1.21807 * 119.99820 * 6.61484 * 7 6 5 9 9 O 1.21799 * 120.00450 * 186.61975 * 7 6 5 10 10 C 1.38255 * 120.12159 * 359.97438 * 6 5 4 11 11 C 1.50703 * 119.97983 * 179.97438 * 10 6 5 12 12 C 1.50697 * 109.47444 * 275.76480 * 11 10 6 13 13 O 1.21280 * 119.99674 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99950 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00442 * 359.97438 * 14 12 11 16 16 C 1.46501 * 119.99653 * 180.02562 * 14 12 11 17 17 H 1.09005 * 109.47517 * 359.97438 * 16 14 12 18 18 C 1.53001 * 109.47436 * 119.99896 * 16 14 12 19 19 C 1.50701 * 109.47228 * 239.99573 * 16 14 12 20 20 H 1.07997 * 119.99788 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00416 * 179.97438 * 19 16 14 22 22 N 1.31517 * 120.00416 * 180.02562 * 21 19 16 23 23 Si 1.86803 * 119.99953 * 0.02562 * 21 19 16 24 24 H 1.48503 * 109.47163 * 89.99667 * 23 21 19 25 25 H 1.48489 * 109.47114 * 210.00016 * 23 21 19 26 26 H 1.48499 * 109.46882 * 330.00173 * 23 21 19 27 27 C 1.38327 * 120.03503 * 0.26976 * 10 6 5 28 28 F 1.35102 * 120.04786 * 179.70502 * 27 10 6 29 29 H 1.09001 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47412 * 300.00156 * 1 2 3 31 31 H 1.09002 * 109.47392 * 60.00176 * 1 2 3 32 32 H 1.08001 * 120.01341 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.95610 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.46993 * 155.76322 * 11 10 6 35 35 H 1.09006 * 109.47301 * 35.76662 * 11 10 6 36 36 H 1.09008 * 109.47223 * 90.00290 * 15 14 12 37 37 H 1.09000 * 109.47581 * 210.00005 * 15 14 12 38 38 H 1.09007 * 109.47162 * 330.00455 * 15 14 12 39 39 H 1.08995 * 109.47733 * 179.97438 * 18 16 14 40 40 H 1.09003 * 109.47147 * 300.00203 * 18 16 14 41 41 H 1.09005 * 109.46818 * 59.99510 * 18 16 14 42 42 H 0.96994 * 120.00240 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2921 2.3751 -0.0005 5 6 1.9214 3.6054 -0.0011 6 6 3.3022 3.6779 -0.0016 7 7 3.9725 4.9974 -0.0016 8 8 3.3142 6.0149 0.1204 9 8 5.1824 5.0659 -0.1237 10 6 4.0577 2.5201 -0.0011 11 6 5.5625 2.6028 -0.0022 12 6 6.0553 2.7716 -1.4163 13 8 5.2626 2.8203 -2.3329 14 7 7.3768 2.8682 -1.6624 15 6 8.3343 2.8099 -0.5552 16 6 7.8558 3.0329 -3.0371 17 1 7.0050 3.0548 -3.7182 18 6 8.6355 4.3443 -3.1519 19 6 8.7569 1.8797 -3.3966 20 1 8.9528 1.1017 -2.6735 21 6 9.3303 1.8172 -4.6488 22 7 10.1163 0.8105 -4.9628 23 14 8.9909 3.1624 -5.8998 24 1 10.0073 4.2360 -5.7603 25 1 9.0572 2.5927 -7.2695 26 1 7.6382 3.7278 -5.6637 27 6 3.4332 1.2858 -0.0056 28 9 4.1713 0.1542 -0.0111 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2135 2.3200 -0.0014 33 1 1.3339 4.5116 -0.0011 34 1 5.9770 1.6874 0.4202 35 1 5.8800 3.4559 0.5974 36 1 8.6275 1.7743 -0.3826 37 1 9.2158 3.4001 -0.8056 38 1 7.8720 3.2117 0.3465 39 1 8.9922 4.4666 -4.1746 40 1 7.9838 5.1784 -2.8919 41 1 9.4863 4.3219 -2.4709 42 1 10.5200 0.7667 -5.8436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412175145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:07 Heat of formation + Delta-G solvation = -67.786940 kcal Electronic energy + Delta-G solvation = -30822.339600 eV Core-core repulsion = 26301.311385 eV Total energy + Delta-G solvation = -4521.028215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.17132 -42.30244 -40.61780 -39.40009 -38.04639 -36.62814 -35.51150 -33.21428 -32.55646 -31.46000 -30.52368 -28.85770 -27.49503 -26.21178 -25.98010 -25.04375 -23.10135 -22.66208 -21.13785 -19.45255 -18.85619 -18.71492 -18.27131 -17.62412 -17.34510 -16.96997 -16.67095 -16.63852 -16.18220 -15.65969 -15.37435 -15.31980 -14.98860 -14.52599 -14.00821 -13.92501 -13.35274 -13.15148 -12.99782 -12.81010 -12.65438 -12.48761 -12.16647 -12.11295 -11.93269 -11.83428 -11.67024 -11.55979 -11.39368 -11.12377 -11.08644 -10.68876 -10.62687 -10.09035 -9.68073 -9.60240 -9.29491 -9.08369 -8.96516 -8.60071 -7.70146 -6.11334 -4.11666 -0.30485 0.39768 1.15543 1.32289 2.41077 2.74329 3.25171 3.27437 3.39830 3.43712 3.57127 3.73417 3.94125 4.12626 4.14838 4.38787 4.51368 4.55236 4.60130 4.74629 4.95094 5.04442 5.16101 5.19528 5.23285 5.29712 5.42653 5.52548 5.70953 5.78310 6.06457 6.26380 6.33205 6.35253 6.43335 6.54455 6.55267 6.91791 7.15204 7.36861 7.65972 7.66879 8.18585 8.50100 8.83894 8.91709 9.49930 11.01399 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.003795 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.408283 B = 7375.584445 C = 8358.737679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.295 6.295 3 C 0.151 3.849 4 C -0.190 4.190 5 C -0.019 4.019 6 C -0.046 4.046 7 N 0.040 4.960 8 O -0.166 6.166 9 O -0.149 6.149 10 C 0.014 3.986 11 C -0.128 4.128 12 C 0.530 3.470 13 O -0.557 6.557 14 N -0.578 5.578 15 C 0.084 3.916 16 C 0.231 3.769 17 H 0.061 0.939 18 C -0.162 4.162 19 C -0.526 4.526 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.896 5.896 23 Si 0.882 3.118 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.264 1.264 27 C 0.082 3.918 28 F -0.109 7.109 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.291 2.476 15.533 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.207 6.207 3 C 0.103 3.897 4 C -0.209 4.209 5 C -0.039 4.039 6 C -0.130 4.130 7 N 0.558 4.442 8 O -0.379 6.379 9 O -0.365 6.365 10 C 0.011 3.989 11 C -0.167 4.167 12 C 0.316 3.684 13 O -0.437 6.437 14 N -0.308 5.308 15 C -0.060 4.060 16 C 0.129 3.871 17 H 0.079 0.921 18 C -0.219 4.219 19 C -0.565 4.565 20 H 0.097 0.903 21 C -0.127 4.127 22 N -0.533 5.533 23 Si 0.712 3.288 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.189 1.189 27 C 0.061 3.939 28 F -0.087 7.087 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.774 1.541 14.894 24.803 hybrid contribution 0.133 0.783 -0.756 1.096 sum -19.641 2.323 14.138 24.311 Atomic orbital electron populations 1.23311 0.76829 1.05225 1.02081 1.86229 1.22650 1.24850 1.86972 1.19224 0.90658 0.86229 0.93596 1.21042 1.01197 0.89866 1.08842 1.20785 0.91175 0.99755 0.92147 1.20395 0.92653 0.82720 1.17218 1.43256 1.01073 1.02322 0.97564 1.94507 1.65519 1.24346 1.53573 1.94526 0.96239 1.93272 1.52439 1.19035 0.97100 0.89397 0.93329 1.21208 0.88646 1.07144 0.99751 1.19566 0.83068 0.77075 0.88684 1.90651 1.54656 1.52318 1.46043 1.47707 1.04333 1.69450 1.09291 1.21665 0.93959 1.01955 0.88413 1.19301 0.95426 0.93649 0.78698 0.92099 1.22450 1.00448 0.98232 1.00814 1.21168 1.27954 1.07169 1.00181 0.90310 1.24850 0.94387 0.95669 0.97771 1.69874 1.31371 1.30571 1.21515 0.86927 0.79609 0.81805 0.80428 1.20293 1.22211 1.18864 1.16228 0.85806 0.82415 1.09403 1.91592 1.76011 1.47186 1.93918 0.87161 0.91782 0.91659 0.82204 0.81994 0.87076 0.84688 0.92689 0.90443 0.92414 0.93243 0.94419 0.92416 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.30 -2.93 10.36 -19.60 -0.20 -3.13 16 3 C 0.15 1.66 6.69 -39.17 -0.26 1.40 16 4 C -0.19 -1.57 9.04 -39.45 -0.36 -1.93 16 5 C -0.02 -0.19 9.55 -39.59 -0.38 -0.57 16 6 C -0.05 -0.63 6.83 -79.94 -0.55 -1.18 16 7 N 0.04 0.63 4.45 33.97 0.15 0.78 16 8 O -0.17 -2.52 18.46 -29.46 -0.54 -3.06 16 9 O -0.15 -2.57 14.43 -29.46 -0.43 -2.99 16 10 C 0.01 0.21 4.38 -104.58 -0.46 -0.25 16 11 C -0.13 -1.98 3.52 -29.04 -0.10 -2.08 16 12 C 0.53 11.00 6.51 -10.99 -0.07 10.93 16 13 O -0.56 -13.61 15.36 5.56 0.09 -13.53 16 14 N -0.58 -12.31 2.75 -175.26 -0.48 -12.79 16 15 C 0.08 1.39 9.48 59.84 0.57 1.96 16 16 C 0.23 5.76 2.23 -69.08 -0.15 5.61 16 17 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 18 C -0.16 -3.61 8.65 37.16 0.32 -3.29 16 19 C -0.53 -14.85 8.95 -34.44 -0.31 -15.16 16 20 H 0.08 2.37 7.89 -52.49 -0.41 1.96 16 21 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 22 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 23 Si 0.88 22.39 24.37 -169.99 -4.14 18.24 16 24 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.26 -6.68 6.53 56.52 0.37 -6.31 16 27 C 0.08 1.15 7.25 -39.30 -0.28 0.87 16 28 F -0.11 -1.68 16.23 2.25 0.04 -1.64 16 29 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 31 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 32 H 0.16 0.68 6.30 -52.49 -0.33 0.34 16 33 H 0.16 1.22 7.62 -52.49 -0.40 0.82 16 34 H 0.11 1.51 7.45 -51.93 -0.39 1.12 16 35 H 0.14 1.87 5.04 -51.93 -0.26 1.61 16 36 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 37 H 0.08 1.28 6.42 -51.93 -0.33 0.94 16 38 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 39 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.19 6.66 -51.93 -0.35 0.84 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -36.39 350.35 -5.14 -41.53 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.53 Total: -1.62 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.14 Total: -0.51 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.44 Total: -38.57 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.09 Total: -22.71 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.39 -5.14 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412175145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.257 kcal (2) G-P(sol) polarization free energy of solvation -36.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds