Wall clock time and date at job start Tue Mar 31 2020 23:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47127 * 233.43960 * 3 2 1 5 5 C 1.46501 * 119.99988 * 270.00597 * 4 3 2 6 6 C 1.47208 * 109.46913 * 269.99990 * 5 4 3 7 7 N 5.35126 * 150.72524 * 182.86226 * 2 1 3 8 8 C 1.34773 * 119.99859 * 90.00175 * 4 3 2 9 9 O 1.21721 * 120.00156 * 0.02562 * 8 4 3 10 10 C 1.46260 * 119.99919 * 179.97438 * 8 4 3 11 11 C 1.35016 * 120.00088 * 173.59638 * 10 8 4 12 12 C 1.46972 * 119.99875 * 346.75679 * 11 10 8 13 13 C 1.40032 * 120.07537 * 316.65553 * 12 11 10 14 14 C 1.37649 * 119.99237 * 179.76735 * 13 12 11 15 15 C 1.39050 * 120.16690 * 0.51355 * 14 13 12 16 16 O 1.35613 * 119.92566 * 179.76521 * 15 14 13 17 17 C 1.34763 * 116.99554 * 355.39671 * 16 15 14 18 18 H 1.07997 * 120.00345 * 5.01847 * 17 16 15 19 19 C 1.38714 * 119.99877 * 185.02414 * 17 16 15 20 20 N 1.31519 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99866 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47174 * 89.99886 * 21 19 17 23 23 H 1.48504 * 109.47131 * 209.99612 * 21 19 17 24 24 H 1.48496 * 109.47532 * 329.99781 * 21 19 17 25 25 C 1.39620 * 120.15876 * 359.74312 * 15 14 13 26 26 O 1.35956 * 120.00436 * 180.02562 * 25 15 14 27 27 C 1.42901 * 116.99761 * 179.97438 * 26 25 15 28 28 C 1.38084 * 119.99605 * 359.97438 * 25 15 14 29 29 H 4.40636 * 5.51364 * 179.97438 * 4 1 2 30 30 H 1.09006 * 109.47008 * 113.44048 * 3 2 1 31 31 H 1.08992 * 109.47554 * 353.44652 * 3 2 1 32 32 H 1.08997 * 109.47435 * 29.99645 * 5 4 3 33 33 H 1.08993 * 109.47298 * 150.00040 * 5 4 3 34 34 H 1.08001 * 119.99713 * 353.31865 * 10 8 4 35 35 H 1.08005 * 120.00555 * 166.75622 * 11 10 8 36 36 H 1.07992 * 120.00220 * 0.02731 * 13 12 11 37 37 H 1.08007 * 119.91634 * 180.25647 * 14 13 12 38 38 H 0.97000 * 119.99407 * 180.02562 * 20 19 17 39 39 H 1.09003 * 109.46706 * 179.97438 * 27 26 25 40 40 H 1.08994 * 109.47537 * 299.99615 * 27 26 25 41 41 H 1.08997 * 109.47490 * 60.00177 * 27 26 25 42 42 H 1.08002 * 120.07956 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8236 1.1094 5 6 3.3774 2.2542 0.9084 6 6 4.7676 2.4584 0.4694 7 7 5.8418 2.6135 0.1307 8 6 3.3589 0.2646 2.3149 9 8 3.1570 -0.9241 2.4818 10 6 3.8466 1.0861 3.4224 11 6 3.9490 0.5579 4.6607 12 6 3.3087 -0.7294 4.9658 13 6 2.0106 -0.9927 4.5112 14 6 1.4144 -2.2007 4.7938 15 6 2.0938 -3.1578 5.5393 16 8 1.4999 -4.3445 5.8189 17 6 0.2191 -4.4947 5.4276 18 1 -0.2619 -3.7226 4.8456 19 6 -0.4815 -5.6412 5.7726 20 7 0.1043 -6.5817 6.4811 21 14 -2.2571 -5.8491 5.2308 22 1 -2.2953 -6.5232 3.9082 23 1 -2.9855 -6.6740 6.2280 24 1 -2.9020 -4.5157 5.1256 25 6 3.3862 -2.9002 6.0005 26 8 4.0478 -3.8385 6.7288 27 6 5.3669 -3.5077 7.1675 28 6 3.9929 -1.6929 5.7159 29 1 -1.0500 0.0000 -0.0003 30 1 3.0092 0.4096 -0.9429 31 1 3.0099 -1.0200 0.1173 32 1 2.6964 2.6353 0.1474 33 1 3.2102 2.7863 1.8448 34 1 4.1291 2.1139 3.2487 35 1 4.5014 1.0812 5.4272 36 1 1.4790 -0.2496 3.9354 37 1 0.4147 -2.4041 4.4390 38 1 -0.3855 -7.3835 6.7219 39 1 5.7800 -4.3407 7.7366 40 1 5.9989 -3.3098 6.3019 41 1 5.3279 -2.6205 7.7994 42 1 4.9924 -1.4921 6.0723 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490971592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:15 Heat of formation + Delta-G solvation = 63.358202 kcal Electronic energy + Delta-G solvation = -28460.767432 eV Core-core repulsion = 24376.195322 eV Total energy + Delta-G solvation = -4084.572110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28551 -39.39576 -37.48232 -37.31405 -36.34282 -35.42776 -33.45421 -32.80330 -32.11046 -29.53057 -29.15401 -28.59665 -27.12367 -26.23281 -25.30006 -23.14437 -21.51566 -21.03114 -19.39595 -18.76315 -18.05756 -17.96313 -17.31924 -17.01116 -16.51775 -15.84972 -15.28233 -15.09239 -15.05221 -14.55328 -14.42046 -14.28272 -13.92528 -13.78516 -13.55837 -13.41803 -13.33387 -13.28714 -13.09453 -12.84595 -12.53216 -12.30053 -12.03190 -11.68644 -11.45986 -11.37948 -11.07525 -10.92380 -10.79193 -10.60217 -10.47499 -10.34987 -10.26267 -9.60309 -9.39694 -9.28832 -9.18143 -8.70622 -7.76133 -6.68883 -6.45483 -3.97478 1.06524 1.91385 2.30165 2.40339 2.58577 2.67023 2.76985 3.13657 3.14104 3.19024 3.28821 3.38286 3.70471 3.96015 4.10073 4.31035 4.52279 4.60281 4.66572 4.83719 5.08370 5.09914 5.12038 5.18510 5.42371 5.49460 5.55192 5.61795 5.71044 5.81221 5.85137 5.89907 6.04142 6.19224 6.27241 6.40659 6.50590 6.68027 6.99673 7.10332 7.15099 7.19745 7.26708 7.43137 7.52622 7.68313 7.96345 8.24258 8.26146 8.98619 9.70791 10.71396 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.003508 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.052257 B = 7979.100339 C =10117.252308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.207 4.207 3 C 0.225 3.775 4 N -0.615 5.615 5 C 0.208 3.792 6 C 0.184 3.816 7 N -0.417 5.417 8 C 0.547 3.453 9 O -0.489 6.489 10 C -0.277 4.277 11 C 0.039 3.961 12 C -0.164 4.164 13 C -0.010 4.010 14 C -0.221 4.221 15 C 0.153 3.847 16 O -0.155 6.155 17 C -0.388 4.388 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.852 5.852 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.266 1.266 25 C 0.040 3.960 26 O -0.305 6.305 27 C 0.032 3.968 28 C -0.134 4.134 29 H 0.217 0.783 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.271 0.729 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 18.014 -8.344 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.208 4.208 3 C 0.103 3.897 4 N -0.351 5.351 5 C 0.081 3.919 6 C -0.136 4.136 7 N -0.095 5.095 8 C 0.339 3.661 9 O -0.362 6.362 10 C -0.298 4.298 11 C 0.019 3.981 12 C -0.165 4.165 13 C -0.029 4.029 14 C -0.241 4.241 15 C 0.098 3.902 16 O -0.057 6.057 17 C -0.464 4.464 18 H 0.112 0.888 19 C -0.166 4.166 20 N -0.486 5.486 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.004 4.004 26 O -0.219 6.219 27 C -0.064 4.064 28 C -0.153 4.153 29 H 0.234 0.766 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.169 16.888 -8.452 19.580 hybrid contribution -1.192 0.212 -0.339 1.258 sum 3.977 17.101 -8.791 19.635 Atomic orbital electron populations 1.24973 0.95956 0.99883 0.98995 1.23397 0.94758 1.01168 1.01489 1.18245 0.83862 0.98221 0.89347 1.47934 1.67550 1.07761 1.11825 1.18984 0.84407 0.83924 1.04576 1.30043 0.95787 0.94055 0.93692 1.81261 1.12244 1.06998 1.09002 1.18620 0.77019 0.88256 0.82198 1.91041 1.48676 1.15220 1.81264 1.22590 1.13584 1.00230 0.93357 1.22356 0.88607 0.92596 0.94508 1.18025 0.95878 0.95076 1.07523 1.20506 0.93215 0.95485 0.93680 1.20716 1.02174 0.94582 1.06626 1.18826 0.90008 0.87145 0.94253 1.83990 1.26713 1.26935 1.68085 1.21446 0.85325 1.05617 1.34020 0.88837 1.25344 1.00170 0.94797 0.96260 1.70055 1.37193 1.07416 1.33889 0.85700 0.80208 0.78929 0.78545 1.19789 1.20200 1.19058 1.17941 0.91741 0.89998 1.00756 1.86226 1.27795 1.40043 1.67860 1.22855 0.83452 1.01411 0.98633 1.20678 0.99208 0.93309 1.02119 0.76640 0.88422 0.87032 0.85827 0.85360 0.85853 0.85837 0.88159 0.85083 0.91897 0.89217 0.93742 0.93701 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.21 -2.27 13.68 -37.12 -0.51 -2.78 16 3 C 0.22 2.18 5.88 -6.83 -0.04 2.14 16 4 N -0.62 -5.95 2.39 -182.08 -0.44 -6.38 16 5 C 0.21 1.13 5.55 -6.82 -0.04 1.09 16 6 C 0.18 1.53 15.76 -20.72 -0.33 1.20 16 7 N -0.42 -4.82 18.54 42.19 0.78 -4.03 16 8 C 0.55 7.34 6.63 -13.04 -0.09 7.25 16 9 O -0.49 -8.94 11.94 5.17 0.06 -8.87 16 10 C -0.28 -3.13 9.00 -37.50 -0.34 -3.46 16 11 C 0.04 0.50 9.79 -37.19 -0.36 0.14 16 12 C -0.16 -2.90 4.49 -105.04 -0.47 -3.37 16 13 C -0.01 -0.20 6.68 -39.12 -0.26 -0.46 16 14 C -0.22 -5.05 9.14 -39.50 -0.36 -5.41 16 15 C 0.15 3.93 6.67 -38.77 -0.26 3.67 16 16 O -0.16 -4.63 9.52 -13.96 -0.13 -4.76 16 17 C -0.39 -11.05 9.48 30.91 0.29 -10.76 16 18 H 0.09 2.46 5.18 -52.49 -0.27 2.18 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 20 N -0.85 -25.34 13.67 55.48 0.76 -24.58 16 21 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C 0.04 0.92 6.70 -39.12 -0.26 0.66 16 26 O -0.31 -6.91 10.28 -34.22 -0.35 -7.26 16 27 C 0.03 0.51 9.81 101.05 0.99 1.50 16 28 C -0.13 -2.53 8.77 -38.99 -0.34 -2.87 16 29 H 0.22 1.59 7.80 -54.09 -0.42 1.16 16 30 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.11 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.12 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.13 0.42 6.19 -51.93 -0.32 0.10 16 34 H 0.12 0.93 6.33 -52.49 -0.33 0.60 16 35 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.10 1.77 7.10 -52.49 -0.37 1.39 16 37 H 0.13 2.98 5.61 -52.48 -0.29 2.68 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 41 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 42 H 0.12 1.83 6.28 -52.49 -0.33 1.50 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -37.87 377.88 -4.89 -42.76 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.34 Total: 3.61 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.90 Total: -11.75 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 1.11 Total: -34.99 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.42 Total: -20.89 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.87 -4.89 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.122 kcal (2) G-P(sol) polarization free energy of solvation -37.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds