Wall clock time and date at job start Tue Mar 31 2020 23:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47375 * 26.10697 * 3 2 1 5 5 C 1.46496 * 120.00164 * 89.99692 * 4 3 2 6 6 C 1.47198 * 109.47213 * 90.00231 * 5 4 3 7 7 N 5.35118 * 150.72032 * 76.67633 * 2 1 3 8 8 C 1.34783 * 119.99774 * 270.00220 * 4 3 2 9 9 O 1.21716 * 120.00316 * 359.97438 * 8 4 3 10 10 C 1.46264 * 119.99431 * 179.97438 * 8 4 3 11 11 C 1.35025 * 119.99441 * 179.97438 * 10 8 4 12 12 C 1.46964 * 119.99685 * 179.97438 * 11 10 8 13 13 C 1.40028 * 120.08044 * 359.97438 * 12 11 10 14 14 C 1.37644 * 120.00131 * 180.02562 * 13 12 11 15 15 C 1.39067 * 120.16030 * 359.97438 * 14 13 12 16 16 O 1.35610 * 119.91680 * 180.02562 * 15 14 13 17 17 C 1.34766 * 117.00569 * 354.37914 * 16 15 14 18 18 H 1.07998 * 119.99446 * 5.05999 * 17 16 15 19 19 C 1.38708 * 120.00126 * 185.07050 * 17 16 15 20 20 N 1.31519 * 119.99899 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47505 * 89.99302 * 21 19 17 23 23 H 1.48500 * 109.47126 * 209.99580 * 21 19 17 24 24 H 1.48508 * 109.47046 * 329.99506 * 21 19 17 25 25 C 1.39619 * 120.15823 * 0.02562 * 15 14 13 26 26 O 1.35953 * 119.99960 * 179.97438 * 25 15 14 27 27 C 1.42899 * 116.99815 * 180.02562 * 26 25 15 28 28 C 1.38079 * 119.99761 * 359.72147 * 25 15 14 29 29 H 4.40641 * 5.51246 * 180.02562 * 4 1 2 30 30 H 1.09008 * 109.46899 * 266.10559 * 3 2 1 31 31 H 1.08997 * 109.46950 * 146.10541 * 3 2 1 32 32 H 1.09004 * 109.47605 * 210.00311 * 5 4 3 33 33 H 1.09005 * 109.47229 * 330.00470 * 5 4 3 34 34 H 1.07993 * 120.00550 * 359.97438 * 10 8 4 35 35 H 1.08001 * 120.00277 * 359.97438 * 11 10 8 36 36 H 1.07996 * 119.99875 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.92125 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99994 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.46902 * 299.99978 * 27 26 25 40 40 H 1.08999 * 109.47411 * 59.99947 * 27 26 25 41 41 H 1.09000 * 109.46871 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.07707 * 180.27854 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2393 -0.6078 5 6 3.3791 -1.3011 -2.0509 6 6 4.7691 -0.9058 -2.3308 7 7 5.8416 -0.6031 -2.5467 8 6 3.3600 -2.3234 0.1608 9 8 3.1575 -2.2720 1.3599 10 6 3.8477 -3.5616 -0.4461 11 6 4.0737 -4.6475 0.3239 12 6 4.5631 -5.8918 -0.2860 13 6 4.7951 -5.9533 -1.6655 14 6 5.2530 -7.1197 -2.2351 15 6 5.4868 -8.2389 -1.4436 16 8 5.9384 -9.3854 -2.0099 17 6 6.0285 -9.4097 -3.3543 18 1 5.8254 -8.5158 -3.9252 19 6 6.3817 -10.5828 -4.0046 20 7 6.6292 -11.6713 -3.3092 21 14 6.5072 -10.6163 -5.8681 22 1 7.8908 -10.2652 -6.2775 23 1 6.1748 -11.9767 -6.3622 24 1 5.5556 -9.6335 -6.4460 25 6 5.2578 -8.1851 -0.0674 26 8 5.4870 -9.2813 0.7033 27 6 5.2306 -9.1551 2.1035 28 6 4.8034 -7.0168 0.5116 29 1 -1.0498 -0.0002 -0.0003 30 1 3.0093 0.0706 1.0254 31 1 3.0089 0.8538 -0.5731 32 1 3.2126 -2.3187 -2.4044 33 1 2.6980 -0.6222 -2.5641 34 1 4.0270 -3.6074 -1.5101 35 1 3.8948 -4.6016 1.3880 36 1 4.6140 -5.0858 -2.2827 37 1 5.4311 -7.1658 -3.2993 38 1 6.8766 -12.4917 -3.7640 39 1 5.8605 -8.3683 2.5186 40 1 4.1821 -8.9014 2.2595 41 1 5.4534 -10.0994 2.6002 42 1 4.6301 -6.9723 1.5767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490971597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:18 Heat of formation + Delta-G solvation = 46.078571 kcal Electronic energy + Delta-G solvation = -27334.451369 eV Core-core repulsion = 23249.129958 eV Total energy + Delta-G solvation = -4085.321411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25009 -39.72115 -37.72704 -37.22622 -36.65318 -35.77687 -33.57632 -32.97073 -32.28102 -29.83233 -29.34998 -28.71241 -27.27803 -26.36264 -25.51728 -23.34037 -21.82519 -20.94574 -19.43440 -18.86768 -18.28101 -18.05100 -17.56357 -17.12353 -16.78004 -15.93290 -15.48180 -15.24878 -15.19732 -14.79037 -14.47471 -14.42656 -14.03699 -13.92970 -13.82126 -13.64479 -13.53403 -13.51412 -13.11112 -12.84420 -12.42287 -12.28560 -11.95734 -11.86913 -11.73002 -11.50457 -11.15508 -11.08797 -10.95757 -10.83775 -10.74756 -10.54767 -10.46847 -9.93846 -9.64178 -9.54180 -9.42442 -8.90178 -8.04306 -6.98104 -6.67170 -4.17827 0.88280 1.84092 2.06353 2.37614 2.47291 2.55240 2.60006 3.02038 3.02578 3.08115 3.24082 3.31247 3.67955 3.78957 3.90157 4.12716 4.40922 4.46376 4.60215 4.82807 4.85063 4.95434 4.98943 5.14455 5.24178 5.38100 5.50350 5.51135 5.51714 5.62694 5.64412 5.79830 5.91843 5.95501 6.15340 6.30023 6.39939 6.49646 6.75538 6.91032 7.00835 7.06158 7.19337 7.22118 7.31485 7.41642 7.73268 8.01018 8.03332 8.75709 9.43875 10.48342 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002518 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.362054 B =11117.719217 C =12717.047282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.206 4.206 3 C 0.224 3.776 4 N -0.613 5.613 5 C 0.208 3.792 6 C 0.182 3.818 7 N -0.410 5.410 8 C 0.565 3.435 9 O -0.539 6.539 10 C -0.294 4.294 11 C 0.050 3.950 12 C -0.172 4.172 13 C -0.055 4.055 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.144 6.144 17 C -0.390 4.390 18 H 0.098 0.902 19 C 0.042 3.958 20 N -0.842 5.842 21 Si 0.946 3.054 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.264 1.264 25 C 0.052 3.948 26 O -0.303 6.303 27 C 0.030 3.970 28 C -0.134 4.134 29 H 0.217 0.783 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.275 0.725 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 17.192 3.209 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.102 3.898 4 N -0.346 5.346 5 C 0.081 3.919 6 C -0.139 4.139 7 N -0.087 5.087 8 C 0.359 3.641 9 O -0.417 6.417 10 C -0.315 4.315 11 C 0.030 3.970 12 C -0.174 4.174 13 C -0.074 4.074 14 C -0.245 4.245 15 C 0.093 3.907 16 O -0.045 6.045 17 C -0.465 4.465 18 H 0.116 0.884 19 C -0.166 4.166 20 N -0.474 5.474 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.188 1.188 25 C 0.007 3.993 26 O -0.217 6.217 27 C -0.066 4.066 28 C -0.153 4.153 29 H 0.234 0.766 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.155 0.845 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.976 16.942 3.514 19.052 hybrid contribution -0.627 0.088 -0.724 0.962 sum -8.603 17.029 2.790 19.282 Atomic orbital electron populations 1.24969 0.95947 0.98704 1.00456 1.23465 0.94823 1.01589 1.00840 1.18282 0.83760 0.86340 1.01409 1.47733 1.67200 1.12844 1.06858 1.19018 0.84690 1.05734 0.82476 1.29803 0.95701 0.93960 0.94390 1.81199 1.12097 1.08672 1.06737 1.18515 0.76054 0.83427 0.86071 1.90800 1.52380 1.83830 1.14700 1.22435 1.14965 0.93326 1.00748 1.22281 0.85399 0.90290 0.99001 1.18134 1.12443 0.93437 0.93351 1.20904 0.96368 0.96705 0.93382 1.20828 1.10288 0.92686 1.00745 1.18893 0.94272 0.88200 0.89375 1.83985 1.67931 1.29400 1.23158 1.21545 1.48236 0.98414 0.78348 0.88421 1.25434 0.96013 0.94036 1.01080 1.70046 1.39842 1.00811 1.36683 0.85638 0.79235 0.78486 0.79716 1.19585 1.19996 1.18849 1.18046 1.05250 0.87333 0.88714 1.86238 1.83529 1.33630 1.18314 1.22923 1.00069 1.02786 0.80815 1.20880 1.03582 0.91851 0.99018 0.76587 0.87151 0.88069 0.85046 0.85677 0.85559 0.85855 0.86731 0.84469 0.91487 0.93434 0.93397 0.88943 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 19.25 29.55 0.57 -0.86 16 2 C -0.21 -1.82 13.68 -37.12 -0.51 -2.32 16 3 C 0.22 1.77 5.88 -6.83 -0.04 1.73 16 4 N -0.61 -5.51 2.39 -182.08 -0.44 -5.95 16 5 C 0.21 1.22 5.59 -6.83 -0.04 1.18 16 6 C 0.18 1.66 15.76 -20.79 -0.33 1.33 16 7 N -0.41 -5.15 18.53 42.12 0.78 -4.37 16 8 C 0.56 7.11 7.59 -13.03 -0.10 7.01 16 9 O -0.54 -8.57 15.81 5.17 0.08 -8.49 16 10 C -0.29 -3.66 8.61 -37.50 -0.32 -3.98 16 11 C 0.05 0.71 9.45 -37.19 -0.35 0.36 16 12 C -0.17 -2.84 5.87 -105.04 -0.62 -3.45 16 13 C -0.06 -0.93 9.40 -39.13 -0.37 -1.29 16 14 C -0.23 -4.52 9.14 -39.49 -0.36 -4.88 16 15 C 0.15 3.49 6.67 -38.76 -0.26 3.23 16 16 O -0.14 -3.97 9.52 -13.95 -0.13 -4.11 16 17 C -0.39 -10.27 9.48 30.91 0.29 -9.98 16 18 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.84 -23.59 13.67 55.48 0.76 -22.83 16 21 Si 0.95 19.21 29.55 -169.99 -5.02 14.19 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 25 C 0.05 1.08 6.70 -39.12 -0.26 0.82 16 26 O -0.30 -6.33 10.28 -34.21 -0.35 -6.68 16 27 C 0.03 0.43 9.81 101.05 0.99 1.42 16 28 C -0.13 -2.33 8.78 -38.99 -0.34 -2.67 16 29 H 0.22 1.00 7.80 -54.10 -0.42 0.58 16 30 H 0.11 1.00 7.42 -51.92 -0.39 0.61 16 31 H 0.10 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.13 0.60 6.09 -51.93 -0.32 0.28 16 33 H 0.13 0.31 8.07 -51.93 -0.42 -0.11 16 34 H 0.13 1.32 4.21 -52.49 -0.22 1.10 16 35 H 0.12 1.72 7.52 -52.49 -0.39 1.33 16 36 H 0.11 1.54 6.15 -52.49 -0.32 1.22 16 37 H 0.14 2.67 5.62 -52.49 -0.29 2.38 16 38 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 40 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.12 1.80 6.28 -52.49 -0.33 1.47 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -35.00 382.41 -4.85 -39.84 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.15 Total: 4.01 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.14 Total: -11.39 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 1.10 Total: -33.15 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.40 Total: -19.28 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.00 -4.85 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.923 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds