Wall clock time and date at job start Tue Mar 31 2020 23:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47375 * 26.10697 * 3 2 1 5 5 C 1.46496 * 120.00164 * 89.99692 * 4 3 2 6 6 C 1.47198 * 109.47213 * 90.00231 * 5 4 3 7 7 N 5.35118 * 150.72032 * 76.67633 * 2 1 3 8 8 C 1.34783 * 119.99774 * 270.00220 * 4 3 2 9 9 O 1.21716 * 120.00316 * 359.97438 * 8 4 3 10 10 C 1.46264 * 119.99431 * 179.97438 * 8 4 3 11 11 C 1.35025 * 119.99441 * 179.97438 * 10 8 4 12 12 C 1.46964 * 119.99685 * 179.97438 * 11 10 8 13 13 C 1.40028 * 120.08044 * 359.97438 * 12 11 10 14 14 C 1.37644 * 120.00131 * 180.02562 * 13 12 11 15 15 C 1.39067 * 120.16030 * 359.97438 * 14 13 12 16 16 O 1.35610 * 119.91680 * 180.02562 * 15 14 13 17 17 C 1.34766 * 117.00569 * 354.37914 * 16 15 14 18 18 H 1.07998 * 119.99446 * 5.05999 * 17 16 15 19 19 C 1.38708 * 120.00126 * 185.07050 * 17 16 15 20 20 N 1.31519 * 119.99899 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47505 * 89.99302 * 21 19 17 23 23 H 1.48500 * 109.47126 * 209.99580 * 21 19 17 24 24 H 1.48508 * 109.47046 * 329.99506 * 21 19 17 25 25 C 1.39619 * 120.15823 * 0.02562 * 15 14 13 26 26 O 1.35953 * 119.99960 * 179.97438 * 25 15 14 27 27 C 1.42899 * 116.99815 * 180.02562 * 26 25 15 28 28 C 1.38079 * 119.99761 * 359.72147 * 25 15 14 29 29 H 4.40641 * 5.51246 * 180.02562 * 4 1 2 30 30 H 1.09008 * 109.46899 * 266.10559 * 3 2 1 31 31 H 1.08997 * 109.46950 * 146.10541 * 3 2 1 32 32 H 1.09004 * 109.47605 * 210.00311 * 5 4 3 33 33 H 1.09005 * 109.47229 * 330.00470 * 5 4 3 34 34 H 1.07993 * 120.00550 * 359.97438 * 10 8 4 35 35 H 1.08001 * 120.00277 * 359.97438 * 11 10 8 36 36 H 1.07996 * 119.99875 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.92125 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99994 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.46902 * 299.99978 * 27 26 25 40 40 H 1.08999 * 109.47411 * 59.99947 * 27 26 25 41 41 H 1.09000 * 109.46871 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.07707 * 180.27854 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2393 -0.6078 5 6 3.3791 -1.3011 -2.0509 6 6 4.7691 -0.9058 -2.3308 7 7 5.8416 -0.6031 -2.5467 8 6 3.3600 -2.3234 0.1608 9 8 3.1575 -2.2720 1.3599 10 6 3.8477 -3.5616 -0.4461 11 6 4.0737 -4.6475 0.3239 12 6 4.5631 -5.8918 -0.2860 13 6 4.7951 -5.9533 -1.6655 14 6 5.2530 -7.1197 -2.2351 15 6 5.4868 -8.2389 -1.4436 16 8 5.9384 -9.3854 -2.0099 17 6 6.0285 -9.4097 -3.3543 18 1 5.8254 -8.5158 -3.9252 19 6 6.3817 -10.5828 -4.0046 20 7 6.6292 -11.6713 -3.3092 21 14 6.5072 -10.6163 -5.8681 22 1 7.8908 -10.2652 -6.2775 23 1 6.1748 -11.9767 -6.3622 24 1 5.5556 -9.6335 -6.4460 25 6 5.2578 -8.1851 -0.0674 26 8 5.4870 -9.2813 0.7033 27 6 5.2306 -9.1551 2.1035 28 6 4.8034 -7.0168 0.5116 29 1 -1.0498 -0.0002 -0.0003 30 1 3.0093 0.0706 1.0254 31 1 3.0089 0.8538 -0.5731 32 1 3.2126 -2.3187 -2.4044 33 1 2.6980 -0.6222 -2.5641 34 1 4.0270 -3.6074 -1.5101 35 1 3.8948 -4.6016 1.3880 36 1 4.6140 -5.0858 -2.2827 37 1 5.4311 -7.1658 -3.2993 38 1 6.8766 -12.4917 -3.7640 39 1 5.8605 -8.3683 2.5186 40 1 4.1821 -8.9014 2.2595 41 1 5.4534 -10.0994 2.6002 42 1 4.6301 -6.9723 1.5767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490971597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:17 Heat of formation + Delta-G solvation = 23.790091 kcal Electronic energy + Delta-G solvation = -27335.417870 eV Core-core repulsion = 23249.129958 eV Total energy + Delta-G solvation = -4086.287912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37440 -41.06478 -39.31459 -38.21950 -37.95575 -36.62430 -34.72070 -34.18508 -33.65019 -31.29543 -30.38515 -29.65484 -28.28455 -27.62554 -27.13336 -24.57283 -23.32039 -22.16146 -20.42953 -19.94975 -19.61345 -19.35948 -18.61112 -17.97214 -17.82903 -17.17870 -16.89625 -16.67679 -16.33389 -16.03854 -15.60514 -15.56860 -15.28038 -15.15592 -15.04062 -15.00496 -14.65759 -14.29023 -13.94337 -13.85025 -13.77207 -13.47675 -13.31922 -13.20009 -12.88964 -12.70783 -12.67348 -12.39738 -12.15968 -12.13001 -12.01599 -11.63514 -11.33513 -11.05636 -10.99727 -10.90611 -10.54458 -10.25879 -9.48149 -8.54380 -8.47349 -6.11648 -0.35408 0.54833 1.05955 1.13912 1.37518 1.47594 1.55425 1.79208 1.89859 1.97308 2.17189 2.23498 2.51830 2.56685 2.85072 3.02548 3.14730 3.35140 3.52636 3.59685 3.88186 4.06432 4.08295 4.20365 4.31249 4.34326 4.39610 4.42369 4.51905 4.55025 4.61903 4.66703 4.71281 4.90795 5.04505 5.08229 5.14376 5.21588 5.33809 5.45241 5.50733 5.75475 5.91752 5.97878 6.14225 6.54307 6.59756 6.73717 6.95336 7.03181 7.75460 8.74402 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.002518 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.362054 B =11117.719217 C =12717.047282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.236 4.236 3 C 0.222 3.778 4 N -0.603 5.603 5 C 0.203 3.797 6 C 0.211 3.789 7 N -0.473 5.473 8 C 0.559 3.441 9 O -0.572 6.572 10 C -0.251 4.251 11 C 0.024 3.976 12 C -0.136 4.136 13 C -0.063 4.063 14 C -0.219 4.219 15 C 0.102 3.898 16 O -0.211 6.211 17 C -0.415 4.415 18 H 0.111 0.889 19 C -0.022 4.022 20 N -0.914 5.914 21 Si 1.020 2.980 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.246 1.246 25 C 0.036 3.964 26 O -0.344 6.344 27 C 0.020 3.980 28 C -0.132 4.132 29 H 0.241 0.759 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.273 0.727 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.222 21.792 2.898 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.237 4.237 3 C 0.100 3.900 4 N -0.335 5.335 5 C 0.078 3.922 6 C -0.108 4.108 7 N -0.152 5.152 8 C 0.353 3.647 9 O -0.453 6.453 10 C -0.271 4.271 11 C 0.004 3.996 12 C -0.137 4.137 13 C -0.081 4.081 14 C -0.238 4.238 15 C 0.050 3.950 16 O -0.117 6.117 17 C -0.490 4.490 18 H 0.128 0.872 19 C -0.221 4.221 20 N -0.551 5.551 21 Si 0.839 3.161 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.169 1.169 25 C -0.009 4.009 26 O -0.259 6.259 27 C -0.074 4.074 28 C -0.151 4.151 29 H 0.258 0.742 30 H 0.113 0.887 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.188 0.812 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.155 0.845 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.511 21.653 3.224 24.284 hybrid contribution -0.170 -0.640 -0.211 0.695 sum -10.680 21.013 3.012 23.763 Atomic orbital electron populations 1.25722 0.96858 0.97550 0.99343 1.23722 0.95385 1.02682 1.01914 1.18436 0.83690 0.86591 1.01234 1.47722 1.65512 1.12208 1.08031 1.19622 0.83528 1.08383 0.80706 1.30295 0.95743 0.92168 0.92611 1.81260 1.14239 1.10964 1.08721 1.18582 0.75976 0.84314 0.85812 1.90806 1.53592 1.84544 1.16365 1.22839 1.09967 0.92436 1.01901 1.22180 0.87972 0.89817 0.99643 1.18524 1.08186 0.93733 0.93256 1.21287 0.95902 0.96887 0.94006 1.21042 1.09158 0.92882 1.00720 1.19606 0.95905 0.88493 0.90983 1.83977 1.72498 1.31665 1.23535 1.21993 1.48968 0.99193 0.78853 0.87182 1.26682 0.95656 0.93394 1.06327 1.70206 1.44387 1.01756 1.38761 0.84564 0.79632 0.78731 0.73165 1.18957 1.19863 1.16904 1.18397 1.05522 0.88526 0.88406 1.86192 1.83975 1.34522 1.21229 1.23274 1.01635 1.04603 0.77920 1.21267 1.02260 0.90790 1.00782 0.74213 0.88742 0.84869 0.82717 0.81179 0.82795 0.85323 0.82400 0.84516 0.91757 0.91646 0.91525 0.87316 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 19.25 74.32 1.43 -0.67 16 2 C -0.24 -3.26 13.68 31.12 0.43 -2.84 16 3 C 0.22 2.64 5.88 84.57 0.50 3.13 16 4 N -0.60 -7.89 2.39 -848.19 -2.03 -9.92 16 5 C 0.20 1.15 5.59 84.57 0.47 1.63 16 6 C 0.21 2.92 15.76 89.45 1.41 4.33 16 7 N -0.47 -10.58 18.53 19.99 0.37 -10.21 16 8 C 0.56 11.60 7.59 86.33 0.66 12.26 16 9 O -0.57 -16.39 15.81 -4.40 -0.07 -16.46 16 10 C -0.25 -4.91 8.61 23.62 0.20 -4.71 16 11 C 0.02 0.57 9.45 23.82 0.23 0.79 16 12 C -0.14 -4.02 5.87 -20.13 -0.12 -4.14 16 13 C -0.06 -1.91 9.40 22.56 0.21 -1.70 16 14 C -0.22 -8.74 9.14 22.33 0.20 -8.53 16 15 C 0.10 5.00 6.67 22.80 0.15 5.15 16 16 O -0.21 -12.62 9.52 -6.57 -0.06 -12.68 16 17 C -0.41 -23.36 9.48 67.93 0.64 -22.71 16 18 H 0.11 5.50 5.18 -2.91 -0.02 5.48 16 19 C -0.02 -1.23 5.49 84.85 0.47 -0.76 16 20 N -0.91 -55.70 13.67 21.62 0.30 -55.41 16 21 Si 1.02 41.34 29.55 68.60 2.03 43.37 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 25 C 0.04 1.56 6.70 22.57 0.15 1.71 16 26 O -0.34 -15.00 10.28 -79.05 -0.81 -15.81 16 27 C 0.02 0.57 9.81 113.37 1.11 1.68 16 28 C -0.13 -4.36 8.78 22.65 0.20 -4.16 16 29 H 0.24 1.25 7.80 -4.43 -0.03 1.21 16 30 H 0.09 1.47 7.42 -2.38 -0.02 1.45 16 31 H 0.13 0.71 8.07 -2.39 -0.02 0.69 16 32 H 0.16 0.28 6.09 -2.38 -0.01 0.27 16 33 H 0.17 -0.36 8.07 -2.38 -0.02 -0.37 16 34 H 0.15 2.14 4.21 -2.91 -0.01 2.13 16 35 H 0.13 3.09 7.52 -2.91 -0.02 3.07 16 36 H 0.16 3.34 6.15 -2.91 -0.02 3.32 16 37 H 0.14 5.37 5.62 -2.91 -0.02 5.35 16 38 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 39 H 0.06 1.58 7.65 -2.39 -0.02 1.56 16 40 H 0.07 1.60 7.67 -2.39 -0.02 1.58 16 41 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.16 4.05 6.28 -2.91 -0.02 4.04 16 Total: -1.00 -86.88 382.41 9.15 -77.72 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 1.09 Total: 18.92 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 8.34 Total: -19.54 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.36 Total: -75.53 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.94 Total: -44.94 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -86.88 9.15 -77.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.514 kcal (2) G-P(sol) polarization free energy of solvation -86.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds