Wall clock time and date at job start Tue Mar 31 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47239 * 6.85883 * 3 2 1 5 5 C 1.37095 * 120.00417 * 263.89065 * 4 3 2 6 6 H 1.08006 * 119.99786 * 200.35756 * 5 4 3 7 7 C 1.38951 * 120.00175 * 20.35637 * 5 4 3 8 8 N 1.31413 * 119.99657 * 21.29691 * 7 5 4 9 9 Si 1.86790 * 120.00189 * 201.29663 * 7 5 4 10 10 H 1.48504 * 109.46924 * 89.99938 * 9 7 5 11 11 H 1.48494 * 109.47529 * 209.99966 * 9 7 5 12 12 H 1.48502 * 109.47331 * 330.00380 * 9 7 5 13 13 C 1.34784 * 119.99454 * 83.89234 * 4 3 2 14 14 O 1.21287 * 120.00349 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99658 * 179.97438 * 13 4 3 16 16 N 1.46903 * 109.46792 * 180.02562 * 15 13 4 17 17 C 1.46907 * 110.99857 * 179.97438 * 16 15 13 18 18 H 1.09005 * 109.46842 * 34.99896 * 17 16 15 19 19 C 1.50701 * 109.47067 * 154.99876 * 17 16 15 20 20 C 1.38230 * 120.00255 * 39.72313 * 19 17 16 21 21 C 1.38230 * 120.00457 * 179.80979 * 20 19 17 22 22 C 1.38240 * 119.99474 * 0.40547 * 21 20 19 23 23 C 1.38230 * 120.00051 * 359.84762 * 22 21 20 24 24 C 1.38233 * 119.99758 * 220.00342 * 19 17 16 25 25 C 1.52996 * 109.46968 * 274.99819 * 17 16 15 26 26 F 1.39896 * 109.47196 * 60.00010 * 25 17 16 27 27 F 1.39900 * 109.46836 * 179.97438 * 25 17 16 28 28 F 1.39904 * 109.47176 * 299.99866 * 25 17 16 29 29 H 4.40641 * 5.51446 * 180.02562 * 4 1 2 30 30 H 1.09007 * 109.46426 * 246.86594 * 3 2 1 31 31 H 1.09000 * 109.47202 * 126.86518 * 3 2 1 32 32 H 0.96998 * 120.00204 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47743 * 60.00138 * 15 13 4 34 34 H 1.09004 * 109.47474 * 299.99913 * 15 13 4 35 35 H 1.00906 * 110.99850 * 303.94945 * 16 15 13 36 36 H 1.08010 * 119.99619 * 0.02562 * 20 19 17 37 37 H 1.07997 * 120.00595 * 180.22955 * 21 20 19 38 38 H 1.08008 * 119.99637 * 179.83663 * 22 21 20 39 39 H 1.08000 * 119.99938 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.00046 * 359.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3704 -0.1649 5 6 3.4829 -2.1112 0.9349 6 1 4.1345 -2.9657 0.8264 7 6 2.9975 -1.7625 2.1893 8 7 1.9144 -1.0257 2.2931 9 14 3.8844 -2.3412 3.7280 10 1 4.9058 -1.3363 4.1181 11 1 2.9049 -2.5055 4.8319 12 1 4.5480 -3.6419 3.4573 13 6 3.2427 -1.9036 -1.3982 14 8 2.9344 -1.2485 -2.3712 15 6 3.7462 -3.3138 -1.5679 16 7 3.7711 -3.6562 -2.9963 17 6 4.2585 -5.0269 -3.2007 18 1 3.9185 -5.6594 -2.3805 19 6 3.7218 -5.5618 -4.5033 20 6 3.6502 -4.7386 -5.6115 21 6 3.1616 -5.2303 -6.8074 22 6 2.7368 -6.5431 -6.8929 23 6 2.8035 -7.3648 -5.7834 24 6 3.2958 -6.8741 -4.5885 25 6 5.7879 -5.0235 -3.2421 26 9 6.2860 -4.5269 -2.0329 27 9 6.2519 -6.3289 -3.4362 28 9 6.2241 -4.2117 -4.2947 29 1 -1.0498 -0.0004 -0.0002 30 1 3.0090 0.4046 0.9451 31 1 3.0091 0.6173 -0.8222 32 1 1.5752 -0.7825 3.1688 33 1 3.0853 -4.0017 -1.0405 34 1 4.7534 -3.3918 -1.1584 35 1 2.8616 -3.5293 -3.4144 36 1 3.9792 -3.7121 -5.5438 37 1 3.1091 -4.5883 -7.6742 38 1 2.3526 -6.9265 -7.8267 39 1 2.4713 -8.3902 -5.8501 40 1 3.3479 -7.5161 -3.7216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491015412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:56 Heat of formation + Delta-G solvation = -84.788958 kcal Electronic energy + Delta-G solvation = -29830.631139 eV Core-core repulsion = 25197.778146 eV Total energy + Delta-G solvation = -4632.852993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.86769 -47.42131 -47.28806 -39.61790 -38.69907 -36.17609 -34.94895 -32.07938 -31.71259 -31.27495 -30.99447 -28.42419 -26.92081 -25.38486 -24.15086 -23.27411 -22.52510 -21.13557 -19.32836 -18.40637 -18.33391 -17.88154 -17.39189 -17.01808 -16.46969 -16.15193 -15.36582 -15.22128 -14.95749 -14.45545 -14.42759 -14.22069 -14.19087 -13.88089 -13.75683 -13.63267 -13.55506 -13.44249 -13.36166 -13.22246 -12.88002 -12.58364 -12.39003 -11.95603 -11.87866 -11.55323 -11.30903 -11.17718 -11.11850 -11.08863 -10.63680 -10.48863 -9.37484 -9.34822 -9.04287 -9.00494 -8.75979 -8.63258 -8.32492 -7.94498 -6.43726 -4.03555 1.07671 1.29059 2.88578 3.06153 3.17772 3.18846 3.54620 3.65165 3.78119 3.93172 3.99466 4.09433 4.17398 4.26408 4.54367 4.73340 4.80512 4.88111 4.94471 5.01474 5.06991 5.12836 5.35650 5.48689 5.65483 5.76653 5.83209 5.94685 5.99885 6.16805 6.28010 6.38270 6.39587 6.61210 6.78246 6.83130 6.90961 7.14775 7.30201 7.38762 7.62675 8.23861 8.96302 8.98348 9.36985 9.78488 10.55153 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.003545 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.536702 B = 7896.674784 C = 8905.822598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.099 4.099 3 C 0.244 3.756 4 N -0.437 5.437 5 C -0.351 4.351 6 H 0.099 0.901 7 C 0.042 3.958 8 N -0.846 5.846 9 Si 0.916 3.084 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.465 3.535 14 O -0.590 6.590 15 C 0.047 3.953 16 N -0.655 5.655 17 C 0.089 3.911 18 H 0.094 0.906 19 C -0.109 4.109 20 C -0.080 4.080 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.095 4.095 25 C 0.462 3.538 26 F -0.178 7.178 27 F -0.187 7.187 28 F -0.172 7.172 29 H 0.197 0.803 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.271 0.729 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.367 0.633 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -10.600 -10.882 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.101 4.101 3 C 0.121 3.879 4 N -0.156 5.156 5 C -0.478 4.478 6 H 0.117 0.883 7 C -0.166 4.166 8 N -0.482 5.482 9 Si 0.743 3.257 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.475 6.475 15 C -0.084 4.084 16 N -0.290 5.290 17 C -0.024 4.024 18 H 0.112 0.888 19 C -0.110 4.110 20 C -0.098 4.098 21 C -0.142 4.142 22 C -0.128 4.128 23 C -0.144 4.144 24 C -0.114 4.114 25 C 0.407 3.593 26 F -0.159 7.159 27 F -0.169 7.169 28 F -0.153 7.153 29 H 0.214 0.786 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.190 0.810 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.170 -9.864 -11.269 15.308 hybrid contribution -0.406 -0.896 1.506 1.799 sum 2.763 -10.761 -9.763 14.790 Atomic orbital electron populations 1.24156 0.95294 1.02615 1.07005 1.23101 0.94310 0.97825 0.94829 1.17991 0.84249 0.84491 1.01127 1.43605 1.55909 1.11127 1.04936 1.19570 1.29355 1.13912 0.85007 0.88292 1.25287 0.94616 0.97210 0.99455 1.70112 1.17118 1.35834 1.25096 0.86103 0.79250 0.79334 0.81053 1.20131 1.21021 1.19375 1.19844 0.83232 0.88097 0.83495 1.90558 1.55385 1.62548 1.39045 1.21933 1.03255 0.96556 0.86647 1.60014 1.35108 1.18088 1.15795 1.21345 0.89388 0.93806 0.97820 0.88807 1.19456 1.02850 0.94757 0.93926 1.21256 0.96358 1.00556 0.91649 1.21206 0.99308 0.95770 0.97897 1.21245 0.98907 0.94135 0.98510 1.21079 1.00542 0.99936 0.92880 1.21037 0.97607 0.94360 0.98354 1.20494 0.91916 0.73042 0.73861 1.93160 1.89547 1.87592 1.45613 1.93153 1.90671 1.37998 1.95042 1.93171 1.91265 1.73276 1.57619 0.78611 0.88189 0.91380 0.91871 0.92097 0.87941 0.80977 0.84229 0.85648 0.86010 0.85829 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.13 19.25 29.55 0.57 -5.56 16 2 C -0.10 -2.42 11.42 -37.12 -0.42 -2.84 16 3 C 0.24 5.85 5.06 -6.83 -0.03 5.81 16 4 N -0.44 -10.66 2.60 -117.93 -0.31 -10.97 16 5 C -0.35 -8.50 9.06 -14.93 -0.14 -8.64 16 6 H 0.10 2.26 6.61 -52.48 -0.35 1.91 16 7 C 0.04 1.00 4.84 -17.47 -0.08 0.92 16 8 N -0.85 -21.39 9.58 55.50 0.53 -20.86 16 9 Si 0.92 18.77 29.60 -169.99 -5.03 13.74 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 C 0.47 10.85 7.60 -10.98 -0.08 10.77 16 14 O -0.59 -14.99 15.89 5.55 0.09 -14.90 16 15 C 0.05 0.89 4.36 -4.97 -0.02 0.87 16 16 N -0.66 -10.80 5.23 -109.21 -0.57 -11.37 16 17 C 0.09 1.22 2.34 -68.86 -0.16 1.06 16 18 H 0.09 1.15 7.66 -51.93 -0.40 0.76 16 19 C -0.11 -1.36 4.39 -104.63 -0.46 -1.82 16 20 C -0.08 -0.99 8.25 -39.59 -0.33 -1.32 16 21 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 22 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.13 -1.20 10.05 -39.59 -0.40 -1.60 16 24 C -0.10 -1.02 9.67 -39.58 -0.38 -1.40 16 25 C 0.46 6.78 2.82 37.16 0.10 6.88 16 26 F -0.18 -2.85 15.04 2.25 0.03 -2.81 16 27 F -0.19 -2.57 17.02 2.25 0.04 -2.54 16 28 F -0.17 -2.70 16.21 2.25 0.04 -2.66 16 29 H 0.20 3.62 7.80 -54.10 -0.42 3.20 16 30 H 0.10 2.41 6.63 -51.92 -0.34 2.06 16 31 H 0.07 1.57 7.61 -51.93 -0.40 1.17 16 32 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.06 1.11 8.01 -51.93 -0.42 0.70 16 34 H 0.10 1.93 5.55 -51.93 -0.29 1.64 16 35 H 0.37 6.13 7.68 -39.29 -0.30 5.82 16 36 H 0.14 1.87 7.60 -52.48 -0.40 1.47 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -28.99 357.39 -6.56 -35.55 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.14 Total: 11.43 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.63 Total: -0.01 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.35 Total: -43.19 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.09 Total: -14.90 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.11 Total: -8.01 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.99 -6.56 -35.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491015412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.236 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds