Wall clock time and date at job start Tue Mar 31 2020 22:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47239 * 6.85883 * 3 2 1 5 5 C 1.37095 * 120.00417 * 263.89065 * 4 3 2 6 6 H 1.08006 * 119.99786 * 200.35756 * 5 4 3 7 7 C 1.38951 * 120.00175 * 20.35637 * 5 4 3 8 8 N 1.31413 * 119.99657 * 21.29691 * 7 5 4 9 9 Si 1.86790 * 120.00189 * 201.29663 * 7 5 4 10 10 H 1.48504 * 109.46924 * 89.99938 * 9 7 5 11 11 H 1.48494 * 109.47529 * 209.99966 * 9 7 5 12 12 H 1.48502 * 109.47331 * 330.00380 * 9 7 5 13 13 C 1.34784 * 119.99454 * 83.89234 * 4 3 2 14 14 O 1.21287 * 120.00349 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99658 * 179.97438 * 13 4 3 16 16 N 1.46903 * 109.46792 * 180.02562 * 15 13 4 17 17 C 1.46907 * 110.99857 * 179.97438 * 16 15 13 18 18 H 1.09005 * 109.46842 * 34.99896 * 17 16 15 19 19 C 1.50701 * 109.47067 * 154.99876 * 17 16 15 20 20 C 1.38230 * 120.00255 * 39.72313 * 19 17 16 21 21 C 1.38230 * 120.00457 * 179.80979 * 20 19 17 22 22 C 1.38240 * 119.99474 * 0.40547 * 21 20 19 23 23 C 1.38230 * 120.00051 * 359.84762 * 22 21 20 24 24 C 1.38233 * 119.99758 * 220.00342 * 19 17 16 25 25 C 1.52996 * 109.46968 * 274.99819 * 17 16 15 26 26 F 1.39896 * 109.47196 * 60.00010 * 25 17 16 27 27 F 1.39900 * 109.46836 * 179.97438 * 25 17 16 28 28 F 1.39904 * 109.47176 * 299.99866 * 25 17 16 29 29 H 4.40641 * 5.51446 * 180.02562 * 4 1 2 30 30 H 1.09007 * 109.46426 * 246.86594 * 3 2 1 31 31 H 1.09000 * 109.47202 * 126.86518 * 3 2 1 32 32 H 0.96998 * 120.00204 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47743 * 60.00138 * 15 13 4 34 34 H 1.09004 * 109.47474 * 299.99913 * 15 13 4 35 35 H 1.00906 * 110.99850 * 303.94945 * 16 15 13 36 36 H 1.08010 * 119.99619 * 0.02562 * 20 19 17 37 37 H 1.07997 * 120.00595 * 180.22955 * 21 20 19 38 38 H 1.08008 * 119.99637 * 179.83663 * 22 21 20 39 39 H 1.08000 * 119.99938 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.00046 * 359.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3704 -0.1649 5 6 3.4829 -2.1112 0.9349 6 1 4.1345 -2.9657 0.8264 7 6 2.9975 -1.7625 2.1893 8 7 1.9144 -1.0257 2.2931 9 14 3.8844 -2.3412 3.7280 10 1 4.9058 -1.3363 4.1181 11 1 2.9049 -2.5055 4.8319 12 1 4.5480 -3.6419 3.4573 13 6 3.2427 -1.9036 -1.3982 14 8 2.9344 -1.2485 -2.3712 15 6 3.7462 -3.3138 -1.5679 16 7 3.7711 -3.6562 -2.9963 17 6 4.2585 -5.0269 -3.2007 18 1 3.9185 -5.6594 -2.3805 19 6 3.7218 -5.5618 -4.5033 20 6 3.6502 -4.7386 -5.6115 21 6 3.1616 -5.2303 -6.8074 22 6 2.7368 -6.5431 -6.8929 23 6 2.8035 -7.3648 -5.7834 24 6 3.2958 -6.8741 -4.5885 25 6 5.7879 -5.0235 -3.2421 26 9 6.2860 -4.5269 -2.0329 27 9 6.2519 -6.3289 -3.4362 28 9 6.2241 -4.2117 -4.2947 29 1 -1.0498 -0.0004 -0.0002 30 1 3.0090 0.4046 0.9451 31 1 3.0091 0.6173 -0.8222 32 1 1.5752 -0.7825 3.1688 33 1 3.0853 -4.0017 -1.0405 34 1 4.7534 -3.3918 -1.1584 35 1 2.8616 -3.5293 -3.4144 36 1 3.9792 -3.7121 -5.5438 37 1 3.1091 -4.5883 -7.6742 38 1 2.3526 -6.9265 -7.8267 39 1 2.4713 -8.3902 -5.8501 40 1 3.3479 -7.5161 -3.7216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491015412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:55 Heat of formation + Delta-G solvation = -100.058994 kcal Electronic energy + Delta-G solvation = -29831.293298 eV Core-core repulsion = 25197.778146 eV Total energy + Delta-G solvation = -4633.515152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.05211 -48.60029 -48.49499 -40.74311 -40.22747 -37.51613 -36.67434 -33.83791 -33.34724 -32.65427 -31.81133 -29.63374 -28.51768 -27.08739 -25.74390 -24.32655 -23.39476 -22.13343 -21.10520 -19.71270 -19.54421 -19.43298 -18.56067 -18.53178 -18.02417 -17.40236 -16.67781 -16.49768 -16.27539 -16.07053 -15.83002 -15.44222 -15.37485 -15.31961 -15.00320 -14.86422 -14.73661 -14.65732 -14.59978 -14.19304 -14.17051 -13.98650 -13.82300 -13.56678 -13.40740 -12.91262 -12.86060 -12.77283 -12.45814 -12.09637 -12.02496 -11.94034 -11.20687 -11.19726 -10.61188 -10.36038 -9.88719 -9.83885 -9.82596 -9.69513 -8.27076 -5.93062 0.24855 0.49239 1.42348 1.51143 1.59927 1.73989 1.87653 2.09287 2.33948 2.41890 2.55312 2.70826 2.89199 3.07431 3.11528 3.21912 3.54510 3.69487 3.87695 3.91943 4.11830 4.16710 4.25799 4.30586 4.45320 4.53998 4.60151 4.68675 4.78797 4.88840 4.98574 5.15439 5.37637 5.39685 5.48751 5.50990 5.60688 5.69016 5.77581 6.04836 6.06375 6.37696 7.10922 7.15004 7.52953 7.94350 8.71732 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.003545 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.536702 B = 7896.674784 C = 8905.822598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.145 4.145 3 C 0.245 3.755 4 N -0.447 5.447 5 C -0.367 4.367 6 H 0.111 0.889 7 C 0.004 3.996 8 N -0.872 5.872 9 Si 0.983 3.017 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.453 3.547 14 O -0.618 6.618 15 C 0.062 3.938 16 N -0.661 5.661 17 C 0.095 3.905 18 H 0.112 0.888 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.131 4.131 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.101 4.101 25 C 0.460 3.540 26 F -0.188 7.188 27 F -0.180 7.180 28 F -0.181 7.181 29 H 0.234 0.766 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.270 0.730 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.365 0.635 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -12.911 -11.108 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.146 4.146 3 C 0.122 3.878 4 N -0.166 5.166 5 C -0.494 4.494 6 H 0.128 0.872 7 C -0.201 4.201 8 N -0.508 5.508 9 Si 0.807 3.193 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.182 1.182 13 C 0.243 3.757 14 O -0.505 6.505 15 C -0.069 4.069 16 N -0.296 5.296 17 C -0.017 4.017 18 H 0.130 0.870 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.149 4.149 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.120 4.120 25 C 0.405 3.595 26 F -0.169 7.169 27 F -0.161 7.161 28 F -0.162 7.162 29 H 0.250 0.750 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.188 0.812 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.755 -12.188 -11.504 16.985 hybrid contribution -0.323 -0.178 1.484 1.529 sum 2.432 -12.366 -10.020 16.101 Atomic orbital electron populations 1.25068 0.96311 1.00846 1.05184 1.23458 0.95094 0.99551 0.96541 1.17894 0.84675 0.84752 1.00445 1.43833 1.55923 1.11288 1.05528 1.19928 1.29745 1.14471 0.85253 0.87193 1.26066 0.94903 0.97243 1.01858 1.70226 1.18218 1.36843 1.25509 0.85085 0.77844 0.79178 0.77219 1.20133 1.21347 1.18243 1.20599 0.82715 0.89598 0.82819 1.90524 1.56536 1.63701 1.39761 1.21732 1.03031 0.93772 0.88335 1.59901 1.35083 1.20511 1.14101 1.21381 0.88424 0.92403 0.99480 0.87049 1.19416 1.04267 0.95722 0.93108 1.21214 0.97816 0.99934 0.92846 1.21443 0.99015 0.96824 0.97638 1.21620 0.97692 0.93432 0.99756 1.21466 0.99392 1.01260 0.92214 1.21290 0.97279 0.93725 0.99683 1.20683 0.92499 0.73077 0.73250 1.93136 1.89770 1.87797 1.46202 1.93159 1.90652 1.37359 1.94963 1.93152 1.91434 1.73644 1.58018 0.74990 0.89069 0.91664 0.92027 0.91356 0.87736 0.81202 0.86226 0.84217 0.83169 0.83012 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.35 19.25 74.32 1.43 -9.92 16 2 C -0.14 -7.17 11.42 31.13 0.36 -6.81 16 3 C 0.25 12.10 5.06 84.58 0.43 12.53 16 4 N -0.45 -22.19 2.60 -645.39 -1.68 -23.87 16 5 C -0.37 -17.76 9.06 84.04 0.76 -17.00 16 6 H 0.11 4.94 6.61 -2.91 -0.02 4.92 16 7 C 0.00 0.19 4.84 84.93 0.41 0.60 16 8 N -0.87 -44.19 9.58 21.66 0.21 -43.99 16 9 Si 0.98 38.01 29.60 68.60 2.03 40.04 16 10 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.29 -11.20 7.11 99.48 0.71 -10.50 16 12 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 13 C 0.45 21.53 7.60 87.66 0.67 22.19 16 14 O -0.62 -32.25 15.89 -3.05 -0.05 -32.30 16 15 C 0.06 2.36 4.36 85.56 0.37 2.73 16 16 N -0.66 -21.92 5.23 -499.43 -2.61 -24.54 16 17 C 0.10 2.54 2.34 44.17 0.10 2.64 16 18 H 0.11 2.57 7.66 -2.38 -0.02 2.55 16 19 C -0.12 -2.98 4.39 -19.87 -0.09 -3.07 16 20 C -0.10 -2.46 8.25 22.27 0.18 -2.27 16 21 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 22 C -0.11 -1.71 10.05 22.27 0.22 -1.48 16 23 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 24 C -0.10 -1.95 9.67 22.27 0.22 -1.74 16 25 C 0.46 13.27 2.82 71.98 0.20 13.47 16 26 F -0.19 -5.93 15.04 44.97 0.68 -5.26 16 27 F -0.18 -4.74 17.02 44.97 0.77 -3.97 16 28 F -0.18 -5.73 16.21 44.97 0.73 -5.00 16 29 H 0.23 8.06 7.80 -4.43 -0.03 8.02 16 30 H 0.09 4.55 6.63 -2.38 -0.02 4.54 16 31 H 0.07 3.15 7.61 -2.39 -0.02 3.13 16 32 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 33 H 0.07 2.46 8.01 -2.39 -0.02 2.44 16 34 H 0.10 3.91 5.55 -2.39 -0.01 3.90 16 35 H 0.37 12.41 7.68 -89.69 -0.69 11.72 16 36 H 0.12 3.35 7.60 -2.91 -0.02 3.33 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.14 2.16 8.04 -2.91 -0.02 2.14 16 Total: -1.00 -62.29 357.39 6.20 -56.10 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.41 Total: 35.03 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.72 Total: 7.75 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -4.08 Total: -92.39 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.30 kcal Atomic # 9 Polarization: -16.41 SS G_CDS: 2.17 Total: -14.24 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -62.29 6.20 -56.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491015412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.960 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds