Wall clock time and date at job start Tue Mar 31 2020 23:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.73883 * 2 1 4 4 O 1.43180 * 109.70661 * 120.60412 * 2 1 3 5 5 C 1.36102 * 116.71240 * 165.83654 * 4 2 1 6 6 C 1.38706 * 119.39511 * 163.16173 * 5 4 2 7 7 C 1.38195 * 120.06715 * 180.10309 * 6 5 4 8 8 C 1.38253 * 120.11174 * 359.49940 * 7 6 5 9 9 C 1.38192 * 120.11653 * 0.31499 * 8 7 6 10 10 C 1.38703 * 120.06287 * 359.97438 * 9 8 7 11 11 O 1.36109 * 119.39297 * 179.83735 * 10 9 8 12 12 C 1.43175 * 116.70188 * 162.84066 * 11 10 9 13 13 H 1.09003 * 109.71208 * 286.55540 * 12 11 10 14 14 C 1.50697 * 109.74940 * 165.94087 * 12 11 10 15 15 O 1.21280 * 119.99616 * 345.94878 * 14 12 11 16 16 N 1.34771 * 120.00448 * 165.94554 * 14 12 11 17 17 C 1.39474 * 120.00582 * 184.49426 * 16 14 12 18 18 C 1.38596 * 119.57555 * 337.31316 * 17 16 14 19 19 C 1.40810 * 118.79511 * 179.97438 * 18 17 16 20 20 C 1.41533 * 120.99992 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00277 * 340.25358 * 20 19 18 22 22 C 1.40033 * 120.00259 * 160.25229 * 20 19 18 23 23 N 1.30743 * 119.99846 * 334.92684 * 22 20 19 24 24 Si 1.86803 * 119.99987 * 154.93022 * 22 20 19 25 25 H 1.48508 * 109.47008 * 94.99000 * 24 22 20 26 26 H 1.48500 * 109.46931 * 214.98694 * 24 22 20 27 27 H 1.48489 * 109.47221 * 334.98733 * 24 22 20 28 28 C 1.41184 * 118.00622 * 0.02562 * 19 18 17 29 29 C 1.37590 * 119.01323 * 359.97438 * 28 19 18 30 30 N 1.32087 * 121.11094 * 359.72842 * 29 28 19 31 31 H 1.09002 * 109.47185 * 291.36321 * 1 2 3 32 32 H 1.09004 * 109.47266 * 51.35927 * 1 2 3 33 33 H 1.08996 * 109.47030 * 171.35986 * 1 2 3 34 34 H 1.07998 * 119.96670 * 359.81571 * 6 5 4 35 35 H 1.07994 * 119.94458 * 179.74763 * 7 6 5 36 36 H 1.08007 * 119.94524 * 180.33496 * 8 7 6 37 37 H 1.07997 * 119.97185 * 180.02562 * 9 8 7 38 38 H 0.97002 * 120.00114 * 4.50071 * 16 14 12 39 39 H 1.08002 * 120.60427 * 0.02562 * 18 17 16 40 40 H 0.97000 * 119.99771 * 179.97438 * 23 22 20 41 41 H 1.07995 * 120.49304 * 180.02562 * 28 19 18 42 42 H 1.07994 * 119.44441 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0128 -0.6862 1.1602 5 6 3.3289 -1.0331 1.1623 6 6 3.9416 -1.3721 2.3597 7 6 5.2778 -1.7245 2.3782 8 6 6.0047 -1.7502 1.2025 9 6 5.3994 -1.4173 0.0056 10 6 4.0602 -1.0570 -0.0192 11 8 3.4786 -0.7285 -1.2051 12 6 2.0474 -0.7360 -1.2437 13 1 1.6849 -1.7640 -1.2405 14 6 1.5679 -0.0319 -2.4868 15 8 2.3361 0.6491 -3.1325 16 7 0.2854 -0.1590 -2.8810 17 6 -0.1357 0.4149 -4.0804 18 6 0.5778 1.4735 -4.6199 19 6 0.1383 2.0401 -5.8318 20 6 0.8319 3.1221 -6.4244 21 1 1.4958 3.7299 -5.8275 22 6 0.6574 3.4048 -7.7848 23 7 0.2865 2.4582 -8.6068 24 14 0.9547 5.1344 -8.4250 25 1 2.3420 5.2382 -8.9447 26 1 -0.0066 5.4297 -9.5176 27 1 0.7651 6.1099 -7.3217 28 6 -1.0150 1.4963 -6.4381 29 6 -1.6572 0.4442 -5.8268 30 7 -1.2091 -0.0627 -4.6924 31 1 -0.3634 0.3744 0.9571 32 1 -0.3634 0.6417 -0.8027 33 1 -0.3633 -1.0160 -0.1544 34 1 3.3752 -1.3561 3.2790 35 1 5.7539 -1.9840 3.3121 36 1 7.0474 -2.0312 1.2193 37 1 5.9693 -1.4386 -0.9115 38 1 -0.3449 -0.6494 -2.3305 39 1 1.4554 1.8565 -4.1203 40 1 0.1653 2.6541 -9.5491 41 1 -1.3870 1.8997 -7.3683 42 1 -2.5398 0.0227 -6.2847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:34 Heat of formation + Delta-G solvation = -33.545287 kcal Electronic energy + Delta-G solvation = -28720.456408 eV Core-core repulsion = 24631.682247 eV Total energy + Delta-G solvation = -4088.774161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73200 -39.97197 -38.18569 -37.74699 -37.24582 -34.79702 -33.92500 -32.91795 -30.93443 -30.74336 -29.32996 -28.86607 -27.32021 -25.98951 -23.97827 -23.01886 -22.59033 -21.64963 -20.84857 -20.15913 -19.09469 -18.08726 -17.99280 -17.16817 -16.43519 -15.95058 -15.89433 -15.34762 -15.05652 -14.94972 -14.83659 -14.46994 -14.35156 -14.18898 -14.03059 -13.59426 -13.38282 -13.05551 -12.82725 -12.63997 -12.56318 -12.33773 -12.10667 -12.08160 -11.56725 -11.50178 -11.26522 -11.23106 -11.07072 -10.64877 -10.48585 -10.23563 -9.92401 -9.30407 -9.08642 -8.86153 -8.27198 -8.11794 -8.09170 -7.18268 -6.97221 -4.59315 1.08351 1.09719 2.21822 2.43273 2.72344 2.76489 2.99028 3.01242 3.06974 3.26587 3.46616 3.57073 3.83001 3.92195 4.35526 4.44618 4.48712 4.54087 4.68962 4.78098 4.98269 5.01979 5.13785 5.19948 5.31920 5.42784 5.62007 5.65433 5.76241 5.84805 5.92809 5.98483 6.24621 6.39724 6.41708 6.57694 6.71191 6.84977 6.94061 7.08897 7.19370 7.33857 7.40932 7.67885 7.90171 8.01431 8.37996 8.47379 8.72020 8.74520 9.47042 9.96935 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.002642 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.043937 B =10594.008222 C =11510.414905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.063 3.937 3 H 0.095 0.905 4 O -0.300 6.300 5 C 0.048 3.952 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.111 4.111 10 C 0.055 3.945 11 O -0.277 6.277 12 C 0.043 3.957 13 H 0.109 0.891 14 C 0.520 3.480 15 O -0.477 6.477 16 N -0.644 5.644 17 C 0.331 3.669 18 C -0.274 4.274 19 C 0.135 3.865 20 C -0.447 4.447 21 H 0.084 0.916 22 C 0.082 3.918 23 N -0.770 5.770 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.273 1.273 27 H -0.257 1.257 28 C -0.232 4.232 29 C 0.108 3.892 30 N -0.603 5.603 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.403 0.597 39 H 0.138 0.862 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.209 -6.369 17.397 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.006 3.994 3 H 0.113 0.887 4 O -0.214 6.214 5 C 0.003 3.997 6 C -0.133 4.133 7 C -0.137 4.137 8 C -0.134 4.134 9 C -0.129 4.129 10 C 0.009 3.991 11 O -0.190 6.190 12 C -0.018 4.018 13 H 0.126 0.874 14 C 0.302 3.698 15 O -0.348 6.348 16 N -0.291 5.291 17 C 0.108 3.892 18 C -0.299 4.299 19 C 0.127 3.873 20 C -0.477 4.477 21 H 0.102 0.898 22 C -0.140 4.140 23 N -0.394 5.394 24 Si 0.731 3.269 25 H -0.193 1.193 26 H -0.198 1.198 27 H -0.181 1.181 28 C -0.256 4.256 29 C -0.043 4.043 30 N -0.325 5.325 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.240 0.760 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.249 -6.654 17.033 18.774 hybrid contribution 0.148 1.014 -0.724 1.255 sum 4.396 -5.640 16.309 17.808 Atomic orbital electron populations 1.22044 0.90201 1.04260 1.05100 1.23055 0.97326 0.96028 0.82984 0.88729 1.86327 1.21564 1.73150 1.40404 1.18971 0.84427 1.02731 0.93545 1.20427 0.94756 1.02592 0.95482 1.20910 0.93135 1.01071 0.98626 1.20924 1.00212 1.00771 0.91515 1.20503 0.91860 1.00857 0.99714 1.19057 0.94047 1.02087 0.83871 1.86415 1.18484 1.84694 1.29423 1.22991 0.81712 1.01641 0.95420 0.87364 1.19413 0.82332 0.82551 0.85467 1.90738 1.54157 1.36475 1.53452 1.43111 1.09688 1.54460 1.21880 1.17812 0.93536 0.91618 0.86208 1.22253 1.04954 1.00479 1.02241 1.17746 0.89824 0.89925 0.89842 1.19616 1.22947 1.11321 0.93794 0.89755 1.26024 0.92261 0.98821 0.96897 1.69833 1.31250 1.33303 1.05038 0.86300 0.79114 0.82287 0.79164 1.19291 1.19777 1.18076 1.22082 0.98388 1.01705 1.03411 1.21608 0.97841 0.94408 0.90424 1.66565 1.17573 1.34663 1.13652 0.89690 0.88858 0.90665 0.84811 0.85103 0.85007 0.84514 0.76041 0.84454 0.90406 0.85924 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.17 37.16 0.30 -1.22 16 2 C 0.06 0.77 3.17 -26.47 -0.08 0.69 16 3 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 4 O -0.30 -3.73 10.07 -32.84 -0.33 -4.06 16 5 C 0.05 0.61 6.49 -39.14 -0.25 0.36 16 6 C -0.11 -1.15 9.96 -39.42 -0.39 -1.55 16 7 C -0.12 -1.02 10.04 -39.59 -0.40 -1.42 16 8 C -0.12 -1.05 10.04 -39.59 -0.40 -1.45 16 9 C -0.11 -1.29 9.96 -39.43 -0.39 -1.68 16 10 C 0.05 0.76 6.49 -39.14 -0.25 0.50 16 11 O -0.28 -4.48 9.66 -46.85 -0.45 -4.93 16 12 C 0.04 0.62 2.99 -27.62 -0.08 0.54 16 13 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 14 C 0.52 9.40 6.70 -10.99 -0.07 9.32 16 15 O -0.48 -10.83 13.31 -13.76 -0.18 -11.01 16 16 N -0.64 -11.50 4.37 -11.49 -0.05 -11.55 16 17 C 0.33 7.64 7.49 -154.70 -1.16 6.48 16 18 C -0.27 -7.06 8.65 -38.48 -0.33 -7.39 16 19 C 0.13 3.64 5.62 -106.55 -0.60 3.04 16 20 C -0.45 -11.89 9.08 -37.65 -0.34 -12.23 16 21 H 0.08 2.19 7.96 -52.48 -0.42 1.78 16 22 C 0.08 2.02 5.05 -17.34 -0.09 1.93 16 23 N -0.77 -19.39 11.17 55.55 0.62 -18.77 16 24 Si 0.91 18.17 29.63 -169.99 -5.04 13.13 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 28 C -0.23 -5.95 8.84 -38.70 -0.34 -6.29 16 29 C 0.11 2.53 11.15 -17.68 -0.20 2.34 16 30 N -0.60 -14.05 10.36 -12.52 -0.13 -14.18 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.98 6.44 -51.93 -0.33 0.65 16 33 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 37 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.40 5.71 6.92 -40.82 -0.28 5.42 16 39 H 0.14 3.63 5.28 -52.58 -0.28 3.35 16 40 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 41 H 0.12 3.15 6.22 -52.49 -0.33 2.83 16 42 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -31.88 353.52 -9.88 -41.77 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.57 Total: 12.31 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -5.08 Total: -8.04 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.44 Total: -44.49 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.97 Total: -20.00 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.04 Total: 13.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.88 -9.88 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.223 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds