Wall clock time and date at job start Tue Mar 31 2020 23:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.73883 * 2 1 4 4 O 1.43180 * 109.70661 * 120.60412 * 2 1 3 5 5 C 1.36102 * 116.71240 * 165.83654 * 4 2 1 6 6 C 1.38706 * 119.39511 * 163.16173 * 5 4 2 7 7 C 1.38195 * 120.06715 * 180.10309 * 6 5 4 8 8 C 1.38253 * 120.11174 * 359.49940 * 7 6 5 9 9 C 1.38192 * 120.11653 * 0.31499 * 8 7 6 10 10 C 1.38703 * 120.06287 * 359.97438 * 9 8 7 11 11 O 1.36109 * 119.39297 * 179.83735 * 10 9 8 12 12 C 1.43175 * 116.70188 * 162.84066 * 11 10 9 13 13 H 1.09003 * 109.71208 * 286.55540 * 12 11 10 14 14 C 1.50697 * 109.74940 * 165.94087 * 12 11 10 15 15 O 1.21280 * 119.99616 * 345.94878 * 14 12 11 16 16 N 1.34771 * 120.00448 * 165.94554 * 14 12 11 17 17 C 1.39474 * 120.00582 * 184.49426 * 16 14 12 18 18 C 1.38596 * 119.57555 * 337.31316 * 17 16 14 19 19 C 1.40810 * 118.79511 * 179.97438 * 18 17 16 20 20 C 1.41533 * 120.99992 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00277 * 340.25358 * 20 19 18 22 22 C 1.40033 * 120.00259 * 160.25229 * 20 19 18 23 23 N 1.30743 * 119.99846 * 334.92684 * 22 20 19 24 24 Si 1.86803 * 119.99987 * 154.93022 * 22 20 19 25 25 H 1.48508 * 109.47008 * 94.99000 * 24 22 20 26 26 H 1.48500 * 109.46931 * 214.98694 * 24 22 20 27 27 H 1.48489 * 109.47221 * 334.98733 * 24 22 20 28 28 C 1.41184 * 118.00622 * 0.02562 * 19 18 17 29 29 C 1.37590 * 119.01323 * 359.97438 * 28 19 18 30 30 N 1.32087 * 121.11094 * 359.72842 * 29 28 19 31 31 H 1.09002 * 109.47185 * 291.36321 * 1 2 3 32 32 H 1.09004 * 109.47266 * 51.35927 * 1 2 3 33 33 H 1.08996 * 109.47030 * 171.35986 * 1 2 3 34 34 H 1.07998 * 119.96670 * 359.81571 * 6 5 4 35 35 H 1.07994 * 119.94458 * 179.74763 * 7 6 5 36 36 H 1.08007 * 119.94524 * 180.33496 * 8 7 6 37 37 H 1.07997 * 119.97185 * 180.02562 * 9 8 7 38 38 H 0.97002 * 120.00114 * 4.50071 * 16 14 12 39 39 H 1.08002 * 120.60427 * 0.02562 * 18 17 16 40 40 H 0.97000 * 119.99771 * 179.97438 * 23 22 20 41 41 H 1.07995 * 120.49304 * 180.02562 * 28 19 18 42 42 H 1.07994 * 119.44441 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0128 -0.6862 1.1602 5 6 3.3289 -1.0331 1.1623 6 6 3.9416 -1.3721 2.3597 7 6 5.2778 -1.7245 2.3782 8 6 6.0047 -1.7502 1.2025 9 6 5.3994 -1.4173 0.0056 10 6 4.0602 -1.0570 -0.0192 11 8 3.4786 -0.7285 -1.2051 12 6 2.0474 -0.7360 -1.2437 13 1 1.6849 -1.7640 -1.2405 14 6 1.5679 -0.0319 -2.4868 15 8 2.3361 0.6491 -3.1325 16 7 0.2854 -0.1590 -2.8810 17 6 -0.1357 0.4149 -4.0804 18 6 0.5778 1.4735 -4.6199 19 6 0.1383 2.0401 -5.8318 20 6 0.8319 3.1221 -6.4244 21 1 1.4958 3.7299 -5.8275 22 6 0.6574 3.4048 -7.7848 23 7 0.2865 2.4582 -8.6068 24 14 0.9547 5.1344 -8.4250 25 1 2.3420 5.2382 -8.9447 26 1 -0.0066 5.4297 -9.5176 27 1 0.7651 6.1099 -7.3217 28 6 -1.0150 1.4963 -6.4381 29 6 -1.6572 0.4442 -5.8268 30 7 -1.2091 -0.0627 -4.6924 31 1 -0.3634 0.3744 0.9571 32 1 -0.3634 0.6417 -0.8027 33 1 -0.3633 -1.0160 -0.1544 34 1 3.3752 -1.3561 3.2790 35 1 5.7539 -1.9840 3.3121 36 1 7.0474 -2.0312 1.2193 37 1 5.9693 -1.4386 -0.9115 38 1 -0.3449 -0.6494 -2.3305 39 1 1.4554 1.8565 -4.1203 40 1 0.1653 2.6541 -9.5491 41 1 -1.3870 1.8997 -7.3683 42 1 -2.5398 0.0227 -6.2847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:33 Heat of formation + Delta-G solvation = -52.101966 kcal Electronic energy + Delta-G solvation = -28721.261086 eV Core-core repulsion = 24631.682247 eV Total energy + Delta-G solvation = -4089.578839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.80483 -41.46995 -39.76589 -38.73733 -38.39312 -36.54365 -35.61513 -34.05135 -32.68977 -31.79219 -30.57133 -30.10568 -28.55085 -27.93281 -24.95965 -24.31780 -23.73084 -23.38580 -22.28512 -21.46969 -20.16404 -19.68932 -19.28054 -18.37974 -17.67161 -17.58564 -17.06173 -16.92159 -16.35995 -16.25075 -16.13773 -15.85328 -15.59391 -15.40801 -15.29269 -14.86839 -14.74057 -14.38036 -14.33631 -14.18715 -13.69743 -13.46468 -13.26796 -13.18172 -12.92846 -12.85553 -12.83488 -12.40162 -12.21701 -12.09701 -12.01155 -11.64304 -11.59999 -11.14535 -10.78597 -10.05381 -10.04094 -9.69629 -9.17070 -9.03537 -8.84505 -6.60221 0.25583 0.26927 0.57355 0.87483 1.07635 1.33447 1.37748 1.49654 1.58391 1.84605 2.15054 2.32394 2.63466 2.70436 2.86789 3.17567 3.42333 3.46997 3.65525 3.74200 4.00388 4.09927 4.10231 4.24321 4.39077 4.44799 4.55441 4.64321 4.67196 4.75086 4.85620 4.93061 5.01091 5.02783 5.14756 5.15574 5.19688 5.44974 5.48891 5.49586 5.67016 5.76345 5.91123 6.05015 6.17136 6.27426 6.48429 6.71546 6.76764 6.92368 7.56248 8.13238 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.002642 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.043937 B =10594.008222 C =11510.414905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.069 3.931 3 H 0.078 0.922 4 O -0.297 6.297 5 C 0.027 3.973 6 C -0.115 4.115 7 C -0.107 4.107 8 C -0.108 4.108 9 C -0.128 4.128 10 C 0.021 3.979 11 O -0.311 6.311 12 C 0.052 3.948 13 H 0.134 0.866 14 C 0.523 3.477 15 O -0.528 6.528 16 N -0.628 5.628 17 C 0.340 3.660 18 C -0.306 4.306 19 C 0.108 3.892 20 C -0.485 4.485 21 H 0.074 0.926 22 C 0.045 3.955 23 N -0.796 5.796 24 Si 0.985 3.015 25 H -0.261 1.261 26 H -0.255 1.255 27 H -0.259 1.259 28 C -0.254 4.254 29 C 0.112 3.888 30 N -0.598 5.598 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.134 0.866 38 H 0.424 0.576 39 H 0.122 0.878 40 H 0.298 0.702 41 H 0.117 0.883 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -7.345 19.353 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 H 0.096 0.904 4 O -0.212 6.212 5 C -0.018 4.018 6 C -0.133 4.133 7 C -0.125 4.125 8 C -0.126 4.126 9 C -0.147 4.147 10 C -0.024 4.024 11 O -0.225 6.225 12 C -0.009 4.009 13 H 0.151 0.849 14 C 0.308 3.692 15 O -0.403 6.403 16 N -0.277 5.277 17 C 0.115 3.885 18 C -0.331 4.331 19 C 0.100 3.900 20 C -0.515 4.515 21 H 0.092 0.908 22 C -0.175 4.175 23 N -0.420 5.420 24 Si 0.804 3.196 25 H -0.186 1.186 26 H -0.178 1.178 27 H -0.183 1.183 28 C -0.277 4.277 29 C -0.039 4.039 30 N -0.319 5.319 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.181 0.819 37 H 0.152 0.848 38 H 0.264 0.736 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.167 -7.676 19.035 20.943 hybrid contribution 0.288 1.203 -1.215 1.734 sum 4.456 -6.473 17.820 19.475 Atomic orbital electron populations 1.22061 0.88014 1.05461 1.05687 1.23009 0.98829 0.94851 0.82123 0.90372 1.86322 1.21781 1.73221 1.39879 1.19296 0.84529 1.03871 0.94093 1.20827 0.95645 1.01622 0.95239 1.21405 0.92407 0.98782 0.99888 1.21338 1.01647 0.99055 0.90579 1.20765 0.91346 1.01535 1.01015 1.19417 0.95072 1.04371 0.83516 1.86340 1.19170 1.85648 1.31362 1.22955 0.81665 1.02426 0.93804 0.84872 1.20148 0.81632 0.81422 0.85989 1.90717 1.55443 1.38693 1.55403 1.42955 1.10290 1.53970 1.20488 1.17958 0.92673 0.90614 0.87212 1.22263 1.05564 1.02341 1.02970 1.18134 0.90703 0.90524 0.90679 1.19842 1.24183 1.12201 0.95239 0.90830 1.26884 0.91462 1.02993 0.96182 1.69832 1.31012 1.35287 1.05898 0.85163 0.79505 0.76284 0.78634 1.18611 1.17843 1.18279 1.22085 0.98709 1.03145 1.03746 1.22149 0.98304 0.93324 0.90094 1.66785 1.17310 1.34236 1.13608 0.87862 0.90057 0.88528 0.82682 0.81263 0.81871 0.84827 0.73557 0.86039 0.89124 0.86507 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.17 71.98 0.59 -2.17 16 2 C 0.07 1.68 3.17 30.76 0.10 1.78 16 3 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 4 O -0.30 -7.08 10.07 -82.48 -0.83 -7.91 16 5 C 0.03 0.65 6.49 22.56 0.15 0.80 16 6 C -0.11 -2.03 9.96 22.37 0.22 -1.80 16 7 C -0.11 -1.44 10.04 22.26 0.22 -1.22 16 8 C -0.11 -1.69 10.04 22.26 0.22 -1.46 16 9 C -0.13 -2.95 9.96 22.37 0.22 -2.73 16 10 C 0.02 0.58 6.49 22.56 0.15 0.72 16 11 O -0.31 -10.53 9.66 -69.20 -0.67 -11.20 16 12 C 0.05 1.51 2.99 30.02 0.09 1.60 16 13 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 14 C 0.52 19.65 6.70 87.66 0.59 20.24 16 15 O -0.53 -25.66 13.31 15.44 0.21 -25.45 16 16 N -0.63 -22.65 4.37 -308.67 -1.35 -24.00 16 17 C 0.34 16.02 7.49 132.75 0.99 17.01 16 18 C -0.31 -16.65 8.65 22.98 0.20 -16.45 16 19 C 0.11 6.11 5.62 -21.11 -0.12 5.99 16 20 C -0.49 -27.19 9.08 23.52 0.21 -26.97 16 21 H 0.07 4.11 7.96 -2.91 -0.02 4.08 16 22 C 0.04 2.24 5.05 85.29 0.43 2.67 16 23 N -0.80 -40.77 11.17 21.84 0.24 -40.52 16 24 Si 0.99 37.68 29.63 68.60 2.03 39.71 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 27 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 28 C -0.25 -13.32 8.84 22.84 0.20 -13.12 16 29 C 0.11 5.23 11.15 84.50 0.94 6.18 16 30 N -0.60 -27.63 10.36 -193.53 -2.01 -29.64 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.66 6.44 -2.38 -0.02 1.64 16 33 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.42 11.57 6.92 -92.71 -0.64 10.92 16 39 H 0.12 6.95 5.28 -4.36 -0.02 6.93 16 40 H 0.30 13.41 8.29 -92.71 -0.77 12.64 16 41 H 0.12 6.17 6.22 -2.91 -0.02 6.15 16 42 H 0.16 6.19 8.06 -2.91 -0.02 6.16 16 Total: -1.00 -73.92 353.52 3.48 -70.44 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.44 Total: 37.51 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.41 Total: -8.94 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -3.11 Total: -94.16 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.29 Total: -44.56 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -73.92 3.48 -70.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.339 kcal (2) G-P(sol) polarization free energy of solvation -73.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds