Wall clock time and date at job start Tue Mar 31 2020 23:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47059 * 269.99520 * 3 2 1 5 5 H 1.48492 * 109.47286 * 29.99589 * 3 2 1 6 6 H 1.48503 * 109.47462 * 150.00107 * 3 2 1 7 7 C 1.37881 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00232 * 172.22928 * 7 2 1 9 9 C 1.50699 * 119.99863 * 352.23867 * 7 2 1 10 10 C 1.52998 * 115.55295 * 84.78106 * 9 7 2 11 11 S 1.81400 * 109.47122 * 65.19093 * 10 9 7 12 12 O 1.42094 * 110.54519 * 285.44008 * 11 10 9 13 13 O 1.42098 * 110.54172 * 62.19177 * 11 10 9 14 14 N 1.65599 * 104.44802 * 173.81306 * 11 10 9 15 15 C 1.46496 * 120.00214 * 65.00636 * 14 11 10 16 16 C 1.50700 * 109.47736 * 164.99716 * 15 14 11 17 17 N 1.30700 * 127.01791 * 90.01543 * 16 15 14 18 18 O 1.21459 * 111.69203 * 179.97438 * 17 16 15 19 19 C 1.33164 * 111.26865 * 359.94188 * 18 17 16 20 20 C 1.35512 * 106.46240 * 359.88701 * 19 18 17 21 21 C 1.50080 * 124.86271 * 179.41470 * 20 19 18 22 22 C 1.53550 * 108.28528 * 344.41286 * 21 20 19 23 23 C 1.53105 * 109.52585 * 49.04138 * 22 21 20 24 24 C 1.50565 * 129.72587 * 180.22037 * 19 18 17 25 25 C 1.52997 * 117.49814 * 230.45086 * 9 7 2 26 26 C 1.52998 * 117.50066 * 299.10988 * 9 7 2 27 27 H 0.96997 * 119.99658 * 5.03254 * 1 2 3 28 28 H 1.09005 * 109.47360 * 305.19492 * 10 9 7 29 29 H 1.08995 * 109.47388 * 185.19305 * 10 9 7 30 30 H 0.97005 * 119.99928 * 244.99621 * 14 11 10 31 31 H 1.09004 * 109.46684 * 284.99748 * 15 14 11 32 32 H 1.08994 * 109.47329 * 44.99310 * 15 14 11 33 33 H 1.08999 * 109.85802 * 224.61429 * 21 20 19 34 34 H 1.09001 * 109.54847 * 104.03041 * 21 20 19 35 35 H 1.09000 * 109.46229 * 289.01905 * 22 21 20 36 36 H 1.09005 * 109.45886 * 169.05615 * 22 21 20 37 37 H 1.09005 * 109.42987 * 170.02545 * 23 22 21 38 38 H 1.08994 * 109.39088 * 50.15405 * 23 22 21 39 39 H 1.09003 * 109.70071 * 282.98542 * 24 19 18 40 40 H 1.09007 * 109.69664 * 43.53936 * 24 19 18 41 41 H 1.09002 * 117.50366 * 215.00143 * 25 9 7 42 42 H 1.08999 * 117.49975 * 0.02562 * 25 9 7 43 43 H 1.09003 * 117.49516 * 359.97438 * 26 9 7 44 44 H 1.08997 * 117.50281 * 144.97263 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0771 -1.1985 -0.1259 9 6 1.2613 -2.4931 0.1774 10 6 0.6669 -3.0923 -1.0987 11 16 2.0071 -3.5641 -2.2265 12 8 2.5779 -2.4123 -2.8321 13 8 2.8266 -4.5638 -1.6364 14 7 1.2438 -4.3445 -3.4717 15 6 0.3178 -3.6108 -4.3381 16 6 0.0489 -4.4167 -5.5828 17 7 -0.8996 -5.2984 -5.7597 18 8 -0.8604 -5.7826 -6.8729 19 6 0.1396 -5.2702 -7.5876 20 6 0.7612 -4.3700 -6.7880 21 6 1.9597 -3.5567 -7.1814 22 6 2.5763 -4.1850 -8.4395 23 6 1.4792 -4.4320 -9.4784 24 6 0.5611 -5.5656 -9.0026 25 6 1.7803 -3.4650 1.2389 26 6 0.4825 -2.6898 1.4795 27 1 -0.4849 0.8368 -0.0737 28 1 0.0274 -2.3543 -1.5831 29 1 0.0776 -3.9737 -0.8460 30 1 1.4099 -5.2874 -3.6276 31 1 -0.6184 -3.4397 -3.8067 32 1 0.7594 -2.6532 -4.6136 33 1 2.6908 -3.5597 -6.3729 34 1 1.6518 -2.5331 -7.3949 35 1 3.0490 -5.1318 -8.1782 36 1 3.3236 -3.5085 -8.8543 37 1 1.9355 -4.7097 -10.4286 38 1 0.8937 -3.5221 -9.6097 39 1 1.0996 -6.5128 -9.0354 40 1 -0.3185 -5.6207 -9.6441 41 1 1.6982 -4.5313 1.0283 42 1 2.6590 -3.1647 1.8097 43 1 0.5080 -1.8798 2.2084 44 1 -0.4536 -3.2457 1.4270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560285277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:14 Heat of formation + Delta-G solvation = -0.912312 kcal Electronic energy + Delta-G solvation = -27961.525495 eV Core-core repulsion = 24009.610358 eV Total energy + Delta-G solvation = -3951.915138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.11420 -37.95233 -36.76835 -36.39273 -35.96912 -35.11044 -33.05781 -32.05422 -31.11112 -30.47442 -28.18527 -26.68764 -25.46215 -24.60970 -23.00691 -21.31117 -21.21738 -19.83710 -19.55108 -18.74015 -17.78578 -17.55261 -16.80229 -16.46811 -15.84572 -15.51271 -15.13403 -14.73408 -14.36501 -14.29932 -14.19917 -14.15964 -13.77188 -13.53159 -13.21614 -13.05773 -12.95893 -12.62936 -11.96568 -11.84492 -11.56076 -11.42308 -11.32638 -11.27488 -11.23781 -11.17725 -11.03412 -10.94933 -10.89329 -10.59545 -10.46598 -10.14282 -10.11976 -9.76269 -9.31816 -9.19077 -8.96342 -8.57347 -8.10877 -6.14956 -4.25656 0.96719 1.31677 2.03222 2.83906 3.29982 3.35533 3.40677 3.48168 3.94947 4.19829 4.36243 4.43051 4.48301 4.50322 4.72032 4.75985 4.92287 4.98045 5.12687 5.13392 5.16060 5.19731 5.20189 5.35911 5.43085 5.54269 5.59982 5.62720 5.72008 5.75336 5.83921 5.93063 5.94882 6.00361 6.07593 6.25462 6.36577 6.60314 6.71985 6.97796 7.13601 7.24020 7.38694 7.79359 8.10605 8.19416 8.79927 9.45551 10.92673 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.003215 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.690028 B = 8708.277571 C = 9319.346633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.554 4.554 11 S 2.607 3.393 12 O -0.947 6.947 13 O -0.971 6.971 14 N -1.128 6.128 15 C 0.199 3.801 16 C 0.023 3.977 17 N -0.356 5.356 18 O 0.109 5.891 19 C -0.042 4.042 20 C -0.185 4.185 21 C -0.053 4.053 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.035 4.035 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.263 0.737 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.411 0.589 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 -9.542 -18.246 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.041 3.959 10 C -0.687 4.687 11 S 2.705 3.295 12 O -0.937 6.937 13 O -0.961 6.961 14 N -0.885 5.885 15 C 0.072 3.928 16 C -0.135 4.135 17 N -0.060 5.060 18 O 0.042 5.958 19 C -0.106 4.106 20 C -0.189 4.189 21 C -0.090 4.090 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.073 4.073 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.119 0.881 30 H 0.243 0.757 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.864 -9.529 -17.345 19.809 hybrid contribution 0.073 0.830 -0.145 0.845 sum -0.791 -8.699 -17.490 19.550 Atomic orbital electron populations 1.69977 1.06048 1.27211 1.47718 1.24955 0.94797 0.99227 0.93309 0.86578 0.80137 0.82798 0.78654 1.20036 1.21081 1.19423 1.20521 0.93695 0.88572 1.52569 0.91327 1.18276 0.99051 0.94353 0.84259 1.29986 1.16432 1.08602 1.13702 1.05199 0.76472 0.73702 0.74164 1.93532 1.74884 1.50783 1.74502 1.93513 1.65376 1.59482 1.77735 1.56046 1.62062 1.22646 1.47780 1.19429 0.94360 0.93423 0.85611 1.23013 0.94253 0.98708 0.97571 1.74294 1.21434 1.12110 0.98174 1.84727 1.42090 1.50936 1.18015 1.24120 0.91269 0.97624 0.97632 1.20715 1.02129 1.02798 0.93271 1.20046 0.92933 0.97802 0.98232 1.21682 0.97784 1.01682 0.94835 1.21643 0.96825 0.98174 0.98895 1.20222 1.00198 1.00417 0.86438 1.23202 0.98698 0.96050 1.06606 1.22555 0.92588 1.01029 1.01826 0.92711 0.84779 0.88105 0.75692 0.89907 0.87852 0.89400 0.89815 0.91362 0.90584 0.90209 0.91022 0.88969 0.89134 0.90678 0.89487 0.89549 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.84 12.98 55.43 0.72 -23.12 16 2 C 0.08 2.22 5.38 -17.82 -0.10 2.13 16 3 Si 0.89 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.01 8.18 -34.44 -0.28 -14.30 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C 0.04 1.04 1.32 -155.66 -0.21 0.84 16 10 C -0.55 -11.60 5.93 37.16 0.22 -11.38 16 11 S 2.61 52.23 5.19 -107.50 -0.56 51.67 16 12 O -0.95 -21.81 17.16 -57.54 -0.99 -22.80 16 13 O -0.97 -21.32 18.08 -57.54 -1.04 -22.36 16 14 N -1.13 -17.60 5.88 -11.66 -0.07 -17.67 16 15 C 0.20 2.89 6.71 -5.20 -0.03 2.85 16 16 C 0.02 0.32 6.72 -82.38 -0.55 -0.23 16 17 N -0.36 -5.10 12.10 33.47 0.41 -4.70 16 18 O 0.11 1.35 11.20 19.24 0.22 1.57 16 19 C -0.04 -0.43 7.39 -35.35 -0.26 -0.69 16 20 C -0.18 -2.18 6.05 -105.21 -0.64 -2.81 16 21 C -0.05 -0.53 6.29 -27.90 -0.18 -0.70 16 22 C -0.12 -0.87 5.92 -26.39 -0.16 -1.03 16 23 C -0.12 -0.66 5.88 -26.45 -0.16 -0.82 16 24 C -0.03 -0.22 6.31 -27.72 -0.17 -0.39 16 25 C -0.21 -4.60 9.96 -26.70 -0.27 -4.86 16 26 C -0.14 -3.22 9.49 -26.70 -0.25 -3.47 16 27 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.13 2.88 8.14 -51.92 -0.42 2.45 16 29 H 0.10 1.81 8.09 -51.93 -0.42 1.39 16 30 H 0.41 5.80 8.61 -34.47 -0.30 5.50 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.48 7.69 -51.93 -0.40 1.08 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 43 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -33.20 379.46 -10.23 -43.43 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.58 Total: 6.99 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: -3.03 Total: -34.87 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 1.06 Total: -45.49 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.81 Total: -43.60 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 52.23 SS G_CDS: -0.56 Total: 51.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.20 -10.23 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560285277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.516 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds