Wall clock time and date at job start Tue Mar 31 2020 23:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48500 * 109.47059 * 269.99520 * 3 2 1 5 5 H 1.48492 * 109.47286 * 29.99589 * 3 2 1 6 6 H 1.48503 * 109.47462 * 150.00107 * 3 2 1 7 7 C 1.37881 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00232 * 172.22928 * 7 2 1 9 9 C 1.50699 * 119.99863 * 352.23867 * 7 2 1 10 10 C 1.52998 * 115.55295 * 84.78106 * 9 7 2 11 11 S 1.81400 * 109.47122 * 65.19093 * 10 9 7 12 12 O 1.42094 * 110.54519 * 285.44008 * 11 10 9 13 13 O 1.42098 * 110.54172 * 62.19177 * 11 10 9 14 14 N 1.65599 * 104.44802 * 173.81306 * 11 10 9 15 15 C 1.46496 * 120.00214 * 65.00636 * 14 11 10 16 16 C 1.50700 * 109.47736 * 164.99716 * 15 14 11 17 17 N 1.30700 * 127.01791 * 90.01543 * 16 15 14 18 18 O 1.21459 * 111.69203 * 179.97438 * 17 16 15 19 19 C 1.33164 * 111.26865 * 359.94188 * 18 17 16 20 20 C 1.35512 * 106.46240 * 359.88701 * 19 18 17 21 21 C 1.50080 * 124.86271 * 179.41470 * 20 19 18 22 22 C 1.53550 * 108.28528 * 344.41286 * 21 20 19 23 23 C 1.53105 * 109.52585 * 49.04138 * 22 21 20 24 24 C 1.50565 * 129.72587 * 180.22037 * 19 18 17 25 25 C 1.52997 * 117.49814 * 230.45086 * 9 7 2 26 26 C 1.52998 * 117.50066 * 299.10988 * 9 7 2 27 27 H 0.96997 * 119.99658 * 5.03254 * 1 2 3 28 28 H 1.09005 * 109.47360 * 305.19492 * 10 9 7 29 29 H 1.08995 * 109.47388 * 185.19305 * 10 9 7 30 30 H 0.97005 * 119.99928 * 244.99621 * 14 11 10 31 31 H 1.09004 * 109.46684 * 284.99748 * 15 14 11 32 32 H 1.08994 * 109.47329 * 44.99310 * 15 14 11 33 33 H 1.08999 * 109.85802 * 224.61429 * 21 20 19 34 34 H 1.09001 * 109.54847 * 104.03041 * 21 20 19 35 35 H 1.09000 * 109.46229 * 289.01905 * 22 21 20 36 36 H 1.09005 * 109.45886 * 169.05615 * 22 21 20 37 37 H 1.09005 * 109.42987 * 170.02545 * 23 22 21 38 38 H 1.08994 * 109.39088 * 50.15405 * 23 22 21 39 39 H 1.09003 * 109.70071 * 282.98542 * 24 19 18 40 40 H 1.09007 * 109.69664 * 43.53936 * 24 19 18 41 41 H 1.09002 * 117.50366 * 215.00143 * 25 9 7 42 42 H 1.08999 * 117.49975 * 0.02562 * 25 9 7 43 43 H 1.09003 * 117.49516 * 359.97438 * 26 9 7 44 44 H 1.08997 * 117.50281 * 144.97263 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0771 -1.1985 -0.1259 9 6 1.2613 -2.4931 0.1774 10 6 0.6669 -3.0923 -1.0987 11 16 2.0071 -3.5641 -2.2265 12 8 2.5779 -2.4123 -2.8321 13 8 2.8266 -4.5638 -1.6364 14 7 1.2438 -4.3445 -3.4717 15 6 0.3178 -3.6108 -4.3381 16 6 0.0489 -4.4167 -5.5828 17 7 -0.8996 -5.2984 -5.7597 18 8 -0.8604 -5.7826 -6.8729 19 6 0.1396 -5.2702 -7.5876 20 6 0.7612 -4.3700 -6.7880 21 6 1.9597 -3.5567 -7.1814 22 6 2.5763 -4.1850 -8.4395 23 6 1.4792 -4.4320 -9.4784 24 6 0.5611 -5.5656 -9.0026 25 6 1.7803 -3.4650 1.2389 26 6 0.4825 -2.6898 1.4795 27 1 -0.4849 0.8368 -0.0737 28 1 0.0274 -2.3543 -1.5831 29 1 0.0776 -3.9737 -0.8460 30 1 1.4099 -5.2874 -3.6276 31 1 -0.6184 -3.4397 -3.8067 32 1 0.7594 -2.6532 -4.6136 33 1 2.6908 -3.5597 -6.3729 34 1 1.6518 -2.5331 -7.3949 35 1 3.0490 -5.1318 -8.1782 36 1 3.3236 -3.5085 -8.8543 37 1 1.9355 -4.7097 -10.4286 38 1 0.8937 -3.5221 -9.6097 39 1 1.0996 -6.5128 -9.0354 40 1 -0.3185 -5.6207 -9.6441 41 1 1.6982 -4.5313 1.0283 42 1 2.6590 -3.1647 1.8097 43 1 0.5080 -1.8798 2.2084 44 1 -0.4536 -3.2457 1.4270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560285277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:13 Heat of formation + Delta-G solvation = -22.689702 kcal Electronic energy + Delta-G solvation = -27962.469834 eV Core-core repulsion = 24009.610358 eV Total energy + Delta-G solvation = -3952.859476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.07824 -38.65079 -38.58442 -38.04011 -37.18770 -36.81416 -34.12878 -34.08586 -31.87056 -31.18946 -29.89634 -27.87837 -27.48344 -25.31533 -23.71756 -23.01126 -22.25003 -21.56464 -20.44503 -20.27902 -18.80315 -18.74237 -18.34604 -18.05515 -17.24542 -16.86727 -16.68451 -16.20285 -15.93856 -15.51059 -15.19428 -14.98385 -14.86003 -14.78720 -14.39882 -14.09119 -13.95023 -13.76365 -13.68835 -13.22892 -13.15995 -13.02855 -12.96286 -12.91519 -12.85431 -12.43383 -12.28059 -12.23265 -11.94072 -11.83543 -11.81724 -11.59805 -11.50926 -11.10356 -10.88554 -10.70236 -10.55237 -10.02444 -9.91478 -8.19381 -6.34533 -0.63015 0.41550 1.01893 1.39669 1.41761 1.50512 2.01426 2.06383 2.39892 2.83535 2.94289 3.07366 3.34980 3.41433 3.42198 3.72657 3.86765 3.97034 3.98132 4.04755 4.20485 4.25943 4.31003 4.46470 4.47525 4.53560 4.56205 4.57725 4.65740 4.68570 4.82371 4.92101 4.96022 4.96206 5.01897 5.18863 5.19207 5.19438 5.35098 5.43710 5.43911 5.57104 5.71329 5.90091 6.21623 6.71863 7.17185 7.38046 8.87640 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.003215 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.690028 B = 8708.277571 C = 9319.346633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.043 3.957 3 Si 0.936 3.064 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.051 0.949 9 C 0.012 3.988 10 C -0.554 4.554 11 S 2.629 3.371 12 O -0.982 6.982 13 O -0.990 6.990 14 N -1.112 6.112 15 C 0.194 3.806 16 C 0.007 3.993 17 N -0.380 5.380 18 O 0.108 5.892 19 C -0.027 4.027 20 C -0.203 4.203 21 C -0.057 4.057 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.035 4.035 25 C -0.197 4.197 26 C -0.139 4.139 27 H 0.266 0.734 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.420 0.580 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 -10.612 -20.231 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.160 4.160 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.009 3.991 10 C -0.687 4.687 11 S 2.726 3.274 12 O -0.972 6.972 13 O -0.981 6.981 14 N -0.872 5.872 15 C 0.067 3.933 16 C -0.151 4.151 17 N -0.085 5.085 18 O 0.041 5.959 19 C -0.092 4.092 20 C -0.208 4.208 21 C -0.094 4.094 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.234 4.234 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.254 0.746 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.039 -10.604 -19.316 22.060 hybrid contribution 0.122 1.109 0.415 1.191 sum -0.917 -9.495 -18.901 21.172 Atomic orbital electron populations 1.70025 1.06693 1.27848 1.48256 1.25529 0.95595 1.01603 0.93249 0.85877 0.79305 0.80080 0.78581 1.20042 1.19974 1.19359 1.20702 0.93223 0.90486 1.52838 0.93087 1.18411 1.00301 0.94387 0.85971 1.29899 1.16743 1.09506 1.12524 1.04297 0.76066 0.72863 0.74127 1.93486 1.75910 1.52525 1.75262 1.93475 1.66312 1.59770 1.78518 1.55545 1.61970 1.22959 1.46711 1.19509 0.94200 0.93407 0.86142 1.22980 0.95057 0.99103 0.97922 1.74269 1.22135 1.12841 0.99286 1.84689 1.42694 1.50779 1.17698 1.24898 0.89554 0.95917 0.98823 1.20959 1.02968 1.03916 0.92953 1.20125 0.92051 0.98086 0.99164 1.21704 0.98508 1.01704 0.93868 1.21671 0.96126 0.97926 0.99387 1.20544 1.01392 1.01491 0.83850 1.23253 0.98194 0.96882 1.05082 1.22514 0.93804 1.00867 1.00603 0.92517 0.85593 0.85052 0.74566 0.89179 0.88178 0.91390 0.89737 0.91307 0.89389 0.87389 0.91267 0.87008 0.86913 0.88448 0.89747 0.91393 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.90 12.98 21.45 0.28 -48.62 16 2 C 0.04 2.36 5.38 84.66 0.46 2.81 16 3 Si 0.94 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.54 -29.47 8.18 25.60 0.21 -29.26 16 8 H 0.05 2.90 7.83 -2.91 -0.02 2.88 16 9 C 0.01 0.56 1.32 -52.93 -0.07 0.49 16 10 C -0.55 -22.95 5.93 71.98 0.43 -22.52 16 11 S 2.63 105.51 5.19 -56.49 -0.29 105.21 16 12 O -0.98 -46.19 17.16 -127.65 -2.19 -48.39 16 13 O -0.99 -43.14 18.08 -127.65 -2.31 -45.45 16 14 N -1.11 -34.49 5.88 -190.80 -1.12 -35.61 16 15 C 0.19 5.68 6.71 85.63 0.57 6.25 16 16 C 0.01 0.20 6.72 43.17 0.29 0.49 16 17 N -0.38 -10.72 12.10 -48.62 -0.59 -11.31 16 18 O 0.11 2.55 11.20 78.88 0.88 3.44 16 19 C -0.03 -0.51 7.39 25.01 0.18 -0.33 16 20 C -0.20 -4.65 6.05 -20.24 -0.12 -4.77 16 21 C -0.06 -1.11 6.29 29.84 0.19 -0.92 16 22 C -0.12 -1.47 5.92 30.81 0.18 -1.29 16 23 C -0.11 -0.90 5.88 30.78 0.18 -0.72 16 24 C -0.04 -0.32 6.31 29.95 0.19 -0.13 16 25 C -0.20 -8.52 9.96 30.62 0.30 -8.21 16 26 C -0.14 -6.26 9.49 30.62 0.29 -5.97 16 27 H 0.27 13.83 8.32 -92.71 -0.77 13.06 16 28 H 0.13 5.43 8.14 -2.39 -0.02 5.41 16 29 H 0.13 4.51 8.09 -2.39 -0.02 4.49 16 30 H 0.42 11.65 8.61 -96.74 -0.83 10.82 16 31 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 32 H 0.10 2.97 7.69 -2.39 -0.02 2.95 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 36 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 39 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.10 3.74 8.14 -2.39 -0.02 3.73 16 42 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 43 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -71.45 379.46 0.16 -71.29 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.18 Total: 27.88 kcal Atomic # 6 Polarization: -67.37 SS G_CDS: 3.28 Total: -64.08 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -1.43 Total: -95.53 kcal Atomic # 8 Polarization: -86.78 SS G_CDS: -3.62 Total: -90.40 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 105.51 SS G_CDS: -0.29 Total: 105.21 kcal Total: -71.45 0.16 -71.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560285277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.604 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds