Wall clock time and date at job start Tue Mar 31 2020 23:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00397 * 2 1 4 4 O 1.20820 * 120.00002 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99981 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.46544 * 299.99705 * 5 3 2 7 7 N 1.46500 * 109.47136 * 180.02562 * 5 3 2 8 8 C 1.34772 * 120.00318 * 84.99464 * 7 5 3 9 9 O 1.21545 * 119.99846 * 0.02562 * 8 7 5 10 10 C 1.47889 * 119.99943 * 179.97438 * 8 7 5 11 11 C 1.39916 * 120.02391 * 359.73263 * 10 8 7 12 12 C 1.38325 * 120.35708 * 179.71838 * 11 10 8 13 13 C 1.37760 * 120.41191 * 0.55495 * 12 11 10 14 14 C 1.40746 * 120.03722 * 359.71977 * 13 12 11 15 15 C 1.41437 * 120.17895 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99674 * 334.93693 * 15 14 13 17 17 C 1.39928 * 120.00275 * 154.93406 * 15 14 13 18 18 N 1.30830 * 120.00370 * 342.57930 * 17 15 14 19 19 Si 1.86803 * 120.00111 * 162.57837 * 17 15 14 20 20 H 1.48493 * 109.47110 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47105 * 120.00271 * 19 17 15 22 22 H 1.48503 * 109.47173 * 239.99966 * 19 17 15 23 23 C 1.38990 * 120.02126 * 180.02562 * 10 8 7 24 24 C 1.50694 * 109.47163 * 59.99383 * 5 3 2 25 25 C 1.38666 * 120.42292 * 260.00320 * 24 5 3 26 26 C 1.38631 * 118.42394 * 180.02562 * 25 24 5 27 27 C 1.38231 * 119.15662 * 359.97438 * 26 25 24 28 28 N 1.31847 * 120.76450 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.72827 * 359.70518 * 28 27 26 30 30 H 1.08999 * 109.46838 * 59.99713 * 1 2 3 31 31 H 1.09005 * 109.46981 * 300.00440 * 1 2 3 32 32 H 1.08996 * 109.47813 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99414 * 265.00086 * 7 5 3 34 34 H 1.07997 * 119.82240 * 359.96741 * 11 10 8 35 35 H 1.08005 * 119.79572 * 180.25717 * 12 11 10 36 36 H 1.07999 * 119.97924 * 179.74875 * 13 12 11 37 37 H 0.96994 * 120.00653 * 179.97438 * 18 17 15 38 38 H 1.07991 * 120.20864 * 359.97438 * 23 10 8 39 39 H 1.08001 * 120.78824 * 359.97438 * 25 24 5 40 40 H 1.08003 * 120.42222 * 180.02562 * 26 25 24 41 41 H 1.08006 * 119.61116 * 179.97438 * 27 26 25 42 42 H 1.07995 * 119.61811 * 180.31005 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2747 -0.0006 6 1 3.9564 0.7804 0.8892 7 7 3.9819 2.6795 0.0002 8 6 4.0759 3.3539 1.1632 9 8 3.8164 2.7964 2.2116 10 6 4.4959 4.7719 1.1639 11 6 4.8012 5.4122 -0.0421 12 6 5.1891 6.7400 -0.0500 13 6 5.2904 7.4439 1.1298 14 6 4.9929 6.8149 2.3533 15 6 5.0953 7.5350 3.5663 16 1 5.7558 8.3868 3.6345 17 6 4.3409 7.1439 4.6780 18 7 3.3089 6.3547 4.5236 19 14 4.8073 7.7485 6.3829 20 1 6.0038 8.6227 6.2879 21 1 3.6769 8.5185 6.9614 22 1 5.1113 6.5854 7.2546 23 6 4.5935 5.4677 2.3632 24 6 4.1047 0.5917 -1.2313 25 6 4.6027 -0.7003 -1.1562 26 6 5.0881 -1.2887 -2.3138 27 6 5.0592 -0.5732 -3.4961 28 7 4.5782 0.6539 -3.5302 29 6 4.1035 1.2431 -2.4500 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 4.1893 3.1243 -0.8365 34 1 4.7297 4.8681 -0.9722 35 1 5.4186 7.2265 -0.9865 36 1 5.5978 8.4791 1.1159 37 1 2.7862 6.0833 5.2942 38 1 4.3630 4.9763 3.2968 39 1 4.6130 -1.2352 -0.2180 40 1 5.4831 -2.2937 -2.2923 41 1 5.4359 -1.0243 -4.4023 42 1 3.7130 2.2476 -2.5178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563560319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:49 Heat of formation + Delta-G solvation = -56.917988 kcal Electronic energy + Delta-G solvation = -28630.613619 eV Core-core repulsion = 24540.825941 eV Total energy + Delta-G solvation = -4089.787677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15181 -40.04086 -39.15111 -37.16143 -36.44168 -35.15432 -33.76670 -32.80129 -31.66769 -30.12320 -29.46547 -28.61480 -26.79531 -25.27791 -24.04133 -23.11395 -22.69277 -21.06759 -20.67368 -19.73643 -18.10111 -17.94183 -17.28841 -17.02717 -16.64991 -16.42778 -16.12772 -15.46189 -15.20315 -14.82843 -14.57693 -14.32281 -14.05675 -13.91620 -13.56958 -13.38704 -13.36434 -13.19972 -12.80673 -12.59983 -12.51492 -12.21610 -12.00522 -11.66389 -11.19465 -11.10166 -10.86466 -10.83831 -10.74045 -10.50765 -10.11105 -10.08797 -9.76725 -9.70779 -9.45265 -9.23709 -9.14278 -9.05932 -7.66850 -7.53363 -6.80487 -4.42369 0.68611 0.95611 2.08006 2.17208 2.50113 2.79665 3.07732 3.12357 3.14191 3.31765 3.63816 3.79571 3.91583 3.99830 4.31841 4.51955 4.59174 4.61166 4.72027 4.80919 5.00896 5.04496 5.10325 5.16920 5.40771 5.41709 5.58553 5.64288 5.76861 5.86063 6.05687 6.24262 6.26379 6.31517 6.46929 6.69227 6.95414 6.98472 7.19157 7.35592 7.60343 7.64342 7.70015 7.70960 7.85876 7.97107 8.15436 8.48363 8.72465 8.80126 8.82400 10.14269 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.003026 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.177703 B = 9251.924079 C =10254.728180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.449 3.551 4 O -0.479 6.479 5 C 0.209 3.791 6 H 0.135 0.865 7 N -0.716 5.716 8 C 0.576 3.424 9 O -0.538 6.538 10 C -0.126 4.126 11 C -0.216 4.216 12 C -0.096 4.096 13 C -0.209 4.209 14 C 0.099 3.901 15 C -0.459 4.459 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.910 3.090 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.088 4.088 24 C -0.145 4.145 25 C -0.045 4.045 26 C -0.170 4.170 27 C 0.103 3.897 28 N -0.478 5.478 29 C 0.114 3.886 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.406 0.594 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.159 0.841 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -15.931 -10.940 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.288 3.712 4 O -0.364 6.364 5 C 0.100 3.900 6 H 0.153 0.847 7 N -0.372 5.372 8 C 0.368 3.632 9 O -0.415 6.415 10 C -0.129 4.129 11 C -0.236 4.236 12 C -0.114 4.114 13 C -0.229 4.229 14 C 0.096 3.904 15 C -0.488 4.488 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.407 5.407 19 Si 0.734 3.266 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.196 1.196 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.071 4.071 26 C -0.190 4.190 27 C -0.054 4.054 28 N -0.186 5.186 29 C -0.043 4.043 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.244 0.756 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.575 -15.657 -10.827 19.044 hybrid contribution -0.213 0.048 1.141 1.162 sum -0.788 -15.609 -9.685 18.387 Atomic orbital electron populations 1.23261 0.76362 1.03483 1.02733 1.86472 1.23390 1.33292 1.84357 1.24209 0.92147 0.81825 0.73062 1.90730 1.66244 1.36181 1.43217 1.18910 0.86818 0.85561 0.98729 0.84746 1.45832 1.70653 1.09578 1.11090 1.18933 0.74965 0.87276 0.82070 1.90702 1.49618 1.69775 1.31443 1.19317 1.07102 0.90810 0.95678 1.20319 1.12478 0.96058 0.94713 1.20435 1.00256 0.93985 0.96759 1.21116 1.10987 0.98529 0.92283 1.17597 0.89289 0.91014 0.92486 1.19615 1.21935 1.12766 0.94474 0.89985 1.25974 0.93307 0.93794 1.01579 1.69800 1.11467 1.26322 1.33106 0.86232 0.79678 0.79487 0.81202 1.18322 1.19928 1.19563 1.21625 0.99334 0.93711 0.96181 1.20506 1.02795 0.96352 0.95105 1.21481 0.92976 0.93108 0.99581 1.22164 1.01533 1.01820 0.93460 1.22905 0.94441 0.90099 0.97930 1.67764 1.09472 1.10879 1.30526 1.22619 0.94591 0.99784 0.87316 0.92010 0.91685 0.88148 0.75590 0.89307 0.88754 0.88512 0.90474 0.84834 0.83909 0.84181 0.82406 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.72 10.48 -39.25 -0.41 -5.13 16 3 C 0.45 7.11 7.27 36.01 0.26 7.37 16 4 O -0.48 -9.31 16.07 -18.75 -0.30 -9.61 16 5 C 0.21 2.99 2.70 -70.24 -0.19 2.80 16 6 H 0.14 1.89 7.47 -51.93 -0.39 1.50 16 7 N -0.72 -12.08 4.51 -57.01 -0.26 -12.34 16 8 C 0.58 12.62 7.60 -12.31 -0.09 12.52 16 9 O -0.54 -13.29 15.99 5.33 0.09 -13.20 16 10 C -0.13 -2.99 5.87 -105.04 -0.62 -3.61 16 11 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 12 C -0.10 -2.06 10.01 -39.72 -0.40 -2.45 16 13 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 14 C 0.10 2.61 5.57 -106.87 -0.59 2.02 16 15 C -0.46 -12.05 9.05 -37.73 -0.34 -12.39 16 16 H 0.08 2.04 7.90 -52.48 -0.41 1.63 16 17 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 18 N -0.78 -20.89 10.97 55.55 0.61 -20.28 16 19 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.09 -2.36 8.23 -38.44 -0.32 -2.68 16 24 C -0.14 -1.66 4.89 -104.49 -0.51 -2.17 16 25 C -0.05 -0.41 9.82 -39.28 -0.39 -0.79 16 26 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 27 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 28 N -0.48 -5.49 10.36 -13.25 -0.14 -5.62 16 29 C 0.11 1.34 10.22 -17.55 -0.18 1.16 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.41 6.07 4.93 -40.82 -0.20 5.86 16 34 H 0.09 1.56 6.38 -52.49 -0.33 1.22 16 35 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 38 H 0.13 3.85 5.77 -52.49 -0.30 3.55 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.16 1.75 6.94 -52.49 -0.36 1.39 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -33.36 369.24 -8.13 -41.50 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.52 Total: 11.67 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.73 Total: -6.30 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.21 Total: -38.24 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.63 Total: -27.94 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.36 -8.13 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563560319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.422 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds