Wall clock time and date at job start Tue Mar 31 2020 23:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48500 * 109.47372 * 270.00013 * 3 2 1 5 5 H 1.48503 * 109.46981 * 29.99858 * 3 2 1 6 6 H 1.48496 * 109.47171 * 149.99579 * 3 2 1 7 7 C 1.37873 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99875 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00441 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47546 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00498 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47332 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47226 * 65.00128 * 12 11 10 14 14 C 1.47159 * 110.99995 * 189.99856 * 13 12 11 15 15 C 1.52899 * 108.49724 * 165.26825 * 14 13 12 16 16 C 1.50715 * 109.87045 * 50.45007 * 15 14 13 17 17 C 1.37739 * 121.75833 * 343.05967 * 16 15 14 18 18 C 1.38685 * 119.76369 * 180.28908 * 17 16 15 19 19 C 1.38058 * 120.37701 * 359.97438 * 18 17 16 20 20 C 1.38226 * 119.87074 * 359.97438 * 19 18 17 21 21 C 1.38076 * 119.82281 * 0.06765 * 20 19 18 22 22 S 1.76205 * 119.82608 * 179.97438 * 21 20 19 23 23 N 1.65597 * 107.21933 * 114.99633 * 22 21 20 24 24 O 1.42102 * 106.40263 * 228.54024 * 22 21 20 25 25 O 1.42100 * 106.39779 * 1.45544 * 22 21 20 26 26 C 1.46638 * 111.00057 * 67.01193 * 13 12 11 27 27 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47316 * 59.99545 * 9 7 2 29 29 H 1.09000 * 109.47016 * 299.99861 * 9 7 2 30 30 H 1.09001 * 109.46979 * 59.99992 * 11 10 9 31 31 H 1.09000 * 109.46881 * 300.00458 * 11 10 9 32 32 H 1.09003 * 109.46787 * 304.99640 * 12 11 10 33 33 H 1.09004 * 109.46612 * 185.00120 * 12 11 10 34 34 H 1.09001 * 109.63290 * 45.57108 * 14 13 12 35 35 H 1.08996 * 109.79951 * 285.06957 * 14 13 12 36 36 H 1.09002 * 109.39319 * 170.54983 * 15 14 13 37 37 H 1.09000 * 109.39180 * 290.35791 * 15 14 13 38 38 H 1.08000 * 119.81461 * 180.02562 * 18 17 16 39 39 H 1.08001 * 120.06888 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.09264 * 180.02562 * 20 19 18 41 41 H 0.97002 * 120.00194 * 0.02562 * 23 22 21 42 42 H 0.97002 * 119.99704 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.27147 * 296.17607 * 26 13 12 44 44 H 1.09001 * 109.26817 * 55.68503 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4125 -2.6542 -0.0001 12 6 5.8070 -4.1324 -0.0009 13 7 5.3677 -4.7558 -1.2564 14 6 5.5142 -6.2189 -1.1982 15 6 4.7175 -6.8324 -2.3501 16 6 5.0800 -6.1501 -3.6442 17 6 5.7238 -4.9326 -3.6663 18 6 6.0324 -4.3390 -4.8811 19 6 5.6986 -4.9617 -6.0672 20 6 5.0536 -6.1841 -6.0453 21 6 4.7448 -6.7759 -4.8366 22 16 3.9219 -8.3338 -4.8085 23 7 4.9672 -9.4283 -4.1365 24 8 2.8402 -8.1998 -3.8968 25 8 3.7516 -8.7220 -6.1648 26 6 6.1114 -4.2163 -2.3993 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6807 0.8905 29 1 3.8752 -0.6796 -0.8895 30 1 5.8153 -2.1707 0.8899 31 1 5.8152 -2.1705 -0.8901 32 1 5.3311 -4.6358 0.8407 33 1 6.8898 -4.2195 0.0887 34 1 5.1278 -6.5882 -0.2483 35 1 6.5657 -6.4889 -1.2956 36 1 4.9484 -7.8951 -2.4242 37 1 3.6516 -6.7059 -2.1606 38 1 6.5375 -3.3846 -4.8994 39 1 5.9410 -4.4948 -7.0104 40 1 4.7911 -6.6745 -6.9709 41 1 5.8483 -9.1434 -3.8477 42 1 4.6981 -10.3543 -4.0311 43 1 5.8895 -3.1544 -2.5040 44 1 7.1799 -4.3452 -2.2263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603027390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:22 Heat of formation + Delta-G solvation = -113.362115 kcal Electronic energy + Delta-G solvation = -27765.994494 eV Core-core repulsion = 23809.203167 eV Total energy + Delta-G solvation = -3956.791327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31240 -39.07430 -38.34828 -37.78181 -36.95839 -34.96334 -34.60710 -33.82435 -33.12335 -31.04631 -30.25851 -28.96255 -26.13107 -24.44906 -24.13201 -23.93090 -22.56184 -20.75420 -20.37427 -19.07582 -19.03482 -18.44149 -17.59928 -17.51957 -17.19612 -16.88065 -16.68324 -16.45201 -16.19306 -15.98090 -15.67433 -15.17970 -15.00469 -14.69369 -14.50162 -14.28261 -13.95522 -13.71319 -13.45943 -13.29187 -13.23955 -13.13995 -13.09798 -13.00483 -12.92601 -12.75289 -12.50433 -12.40182 -11.98428 -11.80231 -11.68796 -11.57113 -11.33947 -11.24460 -10.91523 -10.35180 -10.26661 -9.72535 -9.16562 -8.36309 -6.44229 -0.64938 -0.27248 0.22861 1.31725 1.35972 1.46783 2.08965 2.29553 2.34559 2.67191 2.85065 2.96026 3.16736 3.39443 3.53098 3.67266 3.91926 3.97218 4.11122 4.19702 4.27857 4.28552 4.39995 4.40540 4.47290 4.51720 4.59750 4.62044 4.65346 4.74831 4.77384 4.88775 4.95667 5.04218 5.05949 5.14229 5.23745 5.26631 5.39409 5.45960 5.77661 5.95417 6.11444 6.16059 6.30366 6.60890 6.83939 7.20737 8.81435 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002885 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.844779 B = 9703.965972 C = 9979.821287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.009 3.991 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.242 1.242 7 C -0.544 4.544 8 H 0.024 0.976 9 C 0.182 3.818 10 O -0.395 6.395 11 C 0.049 3.951 12 C 0.068 3.932 13 N -0.557 5.557 14 C 0.058 3.942 15 C -0.116 4.116 16 C 0.017 3.983 17 C -0.111 4.111 18 C -0.059 4.059 19 C -0.142 4.142 20 C -0.031 4.031 21 C -0.684 4.684 22 S 2.720 3.280 23 N -1.231 6.231 24 O -0.995 6.995 25 O -0.995 6.995 26 C 0.093 3.907 27 H 0.272 0.728 28 H 0.012 0.988 29 H 0.006 0.994 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.429 0.571 42 H 0.432 0.568 43 H 0.081 0.919 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.495 -16.034 -9.615 30.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.165 1.165 7 C -0.582 4.582 8 H 0.042 0.958 9 C 0.106 3.894 10 O -0.314 6.314 11 C -0.028 4.028 12 C -0.060 4.060 13 N -0.282 5.282 14 C -0.070 4.070 15 C -0.154 4.154 16 C 0.016 3.984 17 C -0.112 4.112 18 C -0.077 4.077 19 C -0.161 4.161 20 C -0.050 4.050 21 C -0.773 4.773 22 S 2.810 3.190 23 N -0.913 5.913 24 O -0.984 6.984 25 O -0.985 6.985 26 C -0.034 4.034 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.172 0.828 41 H 0.260 0.740 42 H 0.265 0.735 43 H 0.099 0.901 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.714 -16.048 -10.043 28.808 hybrid contribution 1.038 1.012 0.350 1.491 sum 22.753 -15.037 -9.693 28.944 Atomic orbital electron populations 1.70056 1.08412 1.28734 1.51285 1.25911 0.95824 1.03591 0.93495 0.85558 0.79489 0.77210 0.79725 1.18495 1.19846 1.16540 1.21196 0.91305 0.93614 1.52082 0.95763 1.20245 0.93009 0.81501 0.94681 1.87981 1.21037 1.27327 1.95098 1.22763 0.82298 0.97469 1.00259 1.22148 0.99246 0.92932 0.91631 1.62034 1.57506 1.05410 1.03211 1.22151 0.99336 0.86689 0.98786 1.21195 1.02513 1.00020 0.91662 1.19378 0.91795 0.94022 0.93252 1.19900 1.00506 0.94792 0.95964 1.21750 0.94983 0.99538 0.91423 1.21561 0.99630 0.95310 0.99608 1.21217 0.92144 0.95227 0.96436 1.30370 1.22690 1.24732 0.99483 1.00709 0.72600 0.72944 0.72706 1.52679 1.31689 1.24320 1.82564 1.93621 1.53113 1.86392 1.65270 1.93538 1.85386 1.82270 1.37277 1.21028 0.96431 0.98733 0.87218 0.91867 0.97059 0.97608 0.92280 0.93336 0.90076 0.89829 0.89123 0.91396 0.87353 0.89831 0.82778 0.81914 0.82751 0.74047 0.73483 0.90109 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 2 C 0.01 0.56 5.47 84.65 0.46 1.02 16 3 Si 0.96 44.03 27.47 68.60 1.88 45.92 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 7 C -0.54 -34.30 9.99 25.60 0.26 -34.05 16 8 H 0.02 1.74 8.06 -2.91 -0.02 1.72 16 9 C 0.18 9.26 4.76 71.24 0.34 9.60 16 10 O -0.40 -18.59 10.27 -148.98 -1.53 -20.12 16 11 C 0.05 1.56 6.01 71.98 0.43 1.99 16 12 C 0.07 1.66 5.33 86.30 0.46 2.12 16 13 N -0.56 -14.92 4.63 -901.17 -4.17 -19.08 16 14 C 0.06 1.19 5.57 86.22 0.48 1.67 16 15 C -0.12 -2.67 4.48 29.82 0.13 -2.54 16 16 C 0.02 0.41 5.77 -19.85 -0.11 0.30 16 17 C -0.11 -2.56 5.79 -19.90 -0.12 -2.67 16 18 C -0.06 -1.11 9.65 22.33 0.22 -0.89 16 19 C -0.14 -2.47 10.05 22.22 0.22 -2.25 16 20 C -0.03 -0.62 9.54 22.23 0.21 -0.41 16 21 C -0.68 -15.19 5.88 22.36 0.13 -15.06 16 22 S 2.72 57.67 5.50 -56.49 -0.31 57.36 16 23 N -1.23 -12.69 8.36 37.02 0.31 -12.38 16 24 O -0.99 -29.62 16.14 -128.00 -2.07 -31.68 16 25 O -1.00 -25.79 16.95 -128.00 -2.17 -27.96 16 26 C 0.09 2.10 4.92 85.58 0.42 2.52 16 27 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 28 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 29 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.42 6.44 -2.39 -0.02 1.40 16 32 H 0.08 2.08 7.89 -2.39 -0.02 2.06 16 33 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 34 H 0.09 1.77 7.85 -2.39 -0.02 1.75 16 35 H 0.07 0.97 8.05 -2.39 -0.02 0.95 16 36 H 0.11 1.69 5.60 -2.39 -0.01 1.67 16 37 H 0.08 2.57 7.49 -2.39 -0.02 2.55 16 38 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.15 2.66 7.32 -2.91 -0.02 2.64 16 41 H 0.43 2.22 8.38 -96.74 -0.81 1.41 16 42 H 0.43 2.70 8.96 -96.75 -0.87 1.83 16 43 H 0.08 2.03 6.55 -2.39 -0.02 2.01 16 44 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 Total: -1.00 -89.84 363.28 -4.90 -94.74 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.69 Total: 12.84 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.54 Total: -38.65 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -3.56 Total: -92.44 kcal Atomic # 8 Polarization: -74.00 SS G_CDS: -5.77 Total: -79.76 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.31 Total: 57.36 kcal Total: -89.84 -4.90 -94.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603027390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.624 kcal (2) G-P(sol) polarization free energy of solvation -89.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds