Wall clock time and date at job start Tue Mar 31 2020 23:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46955 * 221.42319 * 3 2 1 5 5 C 1.34778 * 119.99889 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00015 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99782 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.47459 * 54.88514 * 7 5 4 9 9 C 1.53001 * 109.47166 * 294.87979 * 7 5 4 10 10 O 1.45202 * 109.46840 * 174.88186 * 7 5 4 11 11 C 1.34866 * 116.99900 * 207.55410 * 10 7 5 12 12 O 1.21600 * 120.00180 * 5.39223 * 11 10 7 13 13 C 1.46712 * 120.00218 * 185.38474 * 11 10 7 14 14 C 1.36217 * 125.45252 * 185.05238 * 13 11 10 15 15 C 1.41654 * 107.74432 * 180.27981 * 14 13 11 16 16 C 1.40046 * 133.34141 * 179.76223 * 15 14 13 17 17 C 1.36566 * 119.83208 * 180.02562 * 16 15 14 18 18 C 1.38853 * 120.60355 * 359.95415 * 17 16 15 19 19 C 1.37848 * 120.63967 * 0.02562 * 18 17 16 20 20 C 1.39092 * 119.81011 * 0.02562 * 19 18 17 21 21 N 1.37823 * 133.14703 * 179.97438 * 20 19 18 22 22 C 1.36874 * 125.62094 * 359.97438 * 21 20 19 23 23 H 1.08000 * 119.99938 * 139.06497 * 22 21 20 24 24 C 1.39022 * 120.00287 * 319.05991 * 22 21 20 25 25 N 1.31344 * 119.99552 * 336.02875 * 24 22 21 26 26 Si 1.86795 * 120.00089 * 156.02457 * 24 22 21 27 27 H 1.48503 * 109.47086 * 184.99853 * 26 24 22 28 28 H 1.48506 * 109.47142 * 304.99646 * 26 24 22 29 29 H 1.48495 * 109.47083 * 64.99676 * 26 24 22 30 30 H 4.40646 * 5.51381 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46796 * 101.42903 * 3 2 1 32 32 H 1.08995 * 109.47215 * 341.42921 * 3 2 1 33 33 H 0.97001 * 119.99601 * 0.02562 * 4 3 2 34 34 H 1.09007 * 109.47263 * 300.00480 * 9 7 5 35 35 H 1.09001 * 109.47067 * 60.00000 * 9 7 5 36 36 H 1.08999 * 109.47364 * 180.02562 * 9 7 5 37 37 H 1.08007 * 126.12723 * 0.03918 * 14 13 11 38 38 H 1.08007 * 120.07876 * 359.97032 * 16 15 14 39 39 H 1.08003 * 119.69630 * 179.97438 * 17 16 15 40 40 H 1.07997 * 119.68652 * 180.02562 * 18 17 16 41 41 H 1.07997 * 120.09309 * 179.97438 * 19 18 17 42 42 H 0.96995 * 120.00306 * 353.25252 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 1.0366 0.9139 5 6 4.4589 1.2222 1.0764 6 8 5.2474 0.5314 0.4665 7 6 4.9607 2.2874 2.0169 8 1 4.5250 2.1350 3.0043 9 6 4.5572 3.6655 1.4885 10 8 6.4077 2.2091 2.1091 11 6 6.9724 2.6409 3.2551 12 8 6.2708 2.9790 4.1890 13 6 8.4333 2.7026 3.3753 14 6 9.1201 3.0260 4.5063 15 6 10.5025 2.9764 4.2010 16 6 11.6615 3.2121 4.9509 17 6 12.8881 3.0818 4.3648 18 6 12.9984 2.7160 3.0299 19 6 11.8723 2.4782 2.2712 20 6 10.6120 2.6057 2.8457 21 7 9.3332 2.4398 2.3591 22 6 9.0077 2.0790 1.0795 23 1 8.2079 1.3749 0.9039 24 6 9.7066 2.6191 0.0059 25 7 10.3214 3.7725 0.1360 26 14 9.7713 1.7045 -1.6215 27 1 10.6711 2.4242 -2.5584 28 1 10.2875 0.3303 -1.3968 29 1 8.4069 1.6318 -2.2031 30 1 -1.0501 -0.0004 -0.0001 31 1 3.0093 0.2045 -1.0073 32 1 3.0099 -0.9733 0.3273 33 1 2.5033 1.5889 1.4019 34 1 4.9930 3.8179 0.5010 35 1 3.4710 3.7243 1.4193 36 1 4.9205 4.4360 2.1685 37 1 8.6880 3.2791 5.4632 38 1 11.5854 3.4972 5.9899 39 1 13.7805 3.2645 4.9451 40 1 13.9759 2.6168 2.5815 41 1 11.9683 2.1946 1.2336 42 1 10.2079 4.2939 0.9460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729767119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:41 Heat of formation + Delta-G solvation = -22.943354 kcal Electronic energy + Delta-G solvation = -28951.213422 eV Core-core repulsion = 24862.898996 eV Total energy + Delta-G solvation = -4088.314427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49864 -41.61582 -40.52971 -37.84210 -37.62913 -36.61650 -35.60849 -34.07231 -32.75772 -32.44922 -30.81369 -29.96642 -28.32940 -26.57475 -26.28365 -24.68893 -22.82143 -22.31752 -21.64582 -21.27272 -20.22226 -19.85249 -19.00942 -18.23195 -17.60939 -17.44397 -17.32179 -16.88797 -16.59240 -16.51663 -15.96689 -15.60193 -15.52035 -15.06694 -14.91168 -14.76059 -14.58540 -14.38819 -14.34899 -13.94007 -13.87476 -13.61349 -13.44352 -12.91559 -12.76869 -12.50367 -12.22659 -12.15665 -11.99748 -11.97004 -11.89596 -11.84653 -11.58683 -11.54017 -10.96246 -10.96164 -10.62342 -10.31521 -9.39734 -8.93114 -8.59544 -6.47487 -0.21365 0.92958 0.99950 1.02469 1.27998 1.44524 1.49963 1.66169 1.73756 1.79391 2.12913 2.21451 2.41460 2.60749 2.82282 3.17622 3.28581 3.42769 3.63451 3.76043 3.80899 4.06898 4.32544 4.36991 4.41543 4.44347 4.45186 4.52441 4.60038 4.66400 4.81261 4.93540 4.95744 5.02234 5.07413 5.13166 5.16574 5.29177 5.50659 5.72790 5.77770 5.82228 5.99223 6.05658 6.22672 6.41135 6.53296 6.60725 6.89950 6.93537 7.20115 8.11081 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.003480 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.367072 B = 8044.385975 C = 9509.044744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.251 4.251 3 C 0.232 3.768 4 N -0.705 5.705 5 C 0.524 3.476 6 O -0.554 6.554 7 C 0.057 3.943 8 H 0.124 0.876 9 C -0.156 4.156 10 O -0.326 6.326 11 C 0.547 3.453 12 O -0.527 6.527 13 C -0.055 4.055 14 C -0.157 4.157 15 C -0.147 4.147 16 C -0.079 4.079 17 C -0.149 4.149 18 C -0.118 4.118 19 C -0.113 4.113 20 C 0.038 3.962 21 N -0.266 5.266 22 C -0.433 4.433 23 H 0.099 0.901 24 C 0.002 3.998 25 N -0.837 5.837 26 Si 1.115 2.885 27 H -0.263 1.263 28 H -0.265 1.265 29 H -0.270 1.270 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.420 0.580 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.098 0.902 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 -2.526 1.552 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.251 4.251 3 C 0.110 3.890 4 N -0.360 5.360 5 C 0.309 3.691 6 O -0.431 6.431 7 C -0.001 4.001 8 H 0.141 0.859 9 C -0.214 4.214 10 O -0.241 6.241 11 C 0.395 3.605 12 O -0.419 6.419 13 C -0.167 4.167 14 C -0.184 4.184 15 C -0.152 4.152 16 C -0.098 4.098 17 C -0.167 4.167 18 C -0.139 4.139 19 C -0.133 4.133 20 C -0.077 4.077 21 N 0.071 4.929 22 C -0.561 4.561 23 H 0.116 0.884 24 C -0.208 4.208 25 N -0.464 5.464 26 Si 0.933 3.067 27 H -0.188 1.188 28 H -0.190 1.190 29 H -0.195 1.195 30 H 0.274 0.726 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.257 0.743 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.175 0.825 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.161 0.839 41 H 0.117 0.883 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.021 -2.973 -0.503 12.393 hybrid contribution -1.362 0.284 1.629 2.142 sum -13.383 -2.689 1.126 13.697 Atomic orbital electron populations 1.25880 0.96575 0.96215 0.96715 1.22780 0.94123 1.04247 1.03976 1.18002 0.84431 0.91948 0.94613 1.45634 1.05358 1.38402 1.46633 1.20173 0.82936 0.83661 0.82298 1.90779 1.56356 1.47903 1.48062 1.22744 0.79264 0.96941 1.01196 0.85863 1.22155 1.04618 0.92554 1.02024 1.86997 1.22990 1.75987 1.38115 1.19972 0.87531 0.73086 0.79907 1.90737 1.63005 1.48460 1.39692 1.19654 0.86912 1.17181 0.93002 1.20652 0.91455 1.08950 0.97344 1.18348 0.94149 1.09331 0.93325 1.20574 0.90222 0.99280 0.99678 1.20858 0.97771 1.03225 0.94856 1.21095 0.97145 1.00733 0.94877 1.20276 0.90194 1.03529 0.99273 1.18896 0.86363 1.08400 0.94002 1.40423 1.02893 1.41823 1.07811 1.20906 1.24681 1.29293 0.81178 0.88368 1.28015 0.91702 0.95206 1.05922 1.70730 1.37327 1.09056 1.29254 0.82962 0.78212 0.75206 0.70339 1.18755 1.18991 1.19480 0.72624 0.89260 0.89375 0.74251 0.92153 0.85927 0.91435 0.82471 0.83746 0.82717 0.83894 0.88343 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 19.25 74.32 1.43 -0.09 16 2 C -0.25 -4.06 13.46 31.13 0.42 -3.65 16 3 C 0.23 4.67 6.15 84.57 0.52 5.19 16 4 N -0.71 -15.11 5.50 -472.13 -2.60 -17.70 16 5 C 0.52 16.73 7.18 87.66 0.63 17.36 16 6 O -0.55 -23.47 16.51 15.72 0.26 -23.21 16 7 C 0.06 1.87 2.99 29.85 0.09 1.96 16 8 H 0.12 3.59 7.17 -2.39 -0.02 3.58 16 9 C -0.16 -4.17 9.48 71.98 0.68 -3.49 16 10 O -0.33 -14.85 7.19 -51.41 -0.37 -15.22 16 11 C 0.55 25.88 7.85 70.04 0.55 26.43 16 12 O -0.53 -23.61 16.12 19.51 0.31 -23.29 16 13 C -0.06 -2.84 6.76 39.87 0.27 -2.57 16 14 C -0.16 -7.25 10.55 22.64 0.24 -7.01 16 15 C -0.15 -6.77 6.16 -21.34 -0.13 -6.90 16 16 C -0.08 -2.90 10.06 22.32 0.22 -2.67 16 17 C -0.15 -4.95 9.97 22.03 0.22 -4.73 16 18 C -0.12 -4.46 10.02 22.32 0.22 -4.24 16 19 C -0.11 -5.35 8.78 22.38 0.20 -5.16 16 20 C 0.04 1.96 5.58 39.07 0.22 2.18 16 21 N -0.27 -14.61 2.56 -331.41 -0.85 -15.45 16 22 C -0.43 -24.40 8.65 84.09 0.73 -23.67 16 23 H 0.10 5.81 6.85 -2.91 -0.02 5.79 16 24 C 0.00 0.10 4.17 84.95 0.35 0.45 16 25 N -0.84 -46.88 12.15 21.67 0.26 -46.62 16 26 Si 1.12 47.77 29.98 68.60 2.06 49.82 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 30 H 0.26 0.63 7.80 -4.41 -0.03 0.60 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.42 6.15 8.24 -92.71 -0.76 5.38 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.12 2.01 7.93 -2.39 -0.02 2.00 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.16 6.34 8.06 -2.91 -0.02 6.32 16 38 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 41 H 0.10 4.97 6.82 -2.91 -0.02 4.95 16 42 H 0.27 15.92 7.45 -92.71 -0.69 15.23 16 Total: -1.00 -75.77 375.45 6.33 -69.45 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.38 Total: 32.82 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 6.86 Total: -10.59 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -3.18 Total: -79.78 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: 0.20 Total: -61.72 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.06 Total: 49.82 kcal Total: -75.77 6.33 -69.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729767119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.503 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds