Wall clock time and date at job start Tue Mar 31 2020 23:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47310 * 2 1 4 4 C 1.46496 * 119.99686 * 274.96822 * 3 2 1 5 5 C 1.53000 * 109.46986 * 264.21274 * 4 3 2 6 6 O 1.42901 * 109.47143 * 65.00609 * 5 4 3 7 7 C 1.34771 * 120.00109 * 94.96983 * 3 2 1 8 8 O 1.21369 * 120.00267 * 354.07059 * 7 3 2 9 9 C 1.49314 * 119.99980 * 174.35695 * 7 3 2 10 10 O 1.21395 * 119.99813 * 4.48024 * 9 7 3 11 11 N 1.34776 * 119.99912 * 184.48633 * 9 7 3 12 12 C 1.39809 * 119.99712 * 185.28655 * 11 9 7 13 13 C 1.38792 * 120.08921 * 34.57069 * 12 11 9 14 14 C 1.38137 * 120.01640 * 179.69730 * 13 12 11 15 15 C 1.38586 * 120.19267 * 0.59843 * 14 13 12 16 16 F 1.35092 * 119.92266 * 179.70118 * 15 14 13 17 17 C 1.38350 * 120.16565 * 359.67828 * 15 14 13 18 18 C 1.38745 * 119.97992 * 0.02562 * 17 15 14 19 19 O 1.35748 * 120.08837 * 180.02562 * 18 17 15 20 20 C 1.34796 * 117.00333 * 5.37918 * 19 18 17 21 21 H 1.07995 * 119.99820 * 5.22366 * 20 19 18 22 22 C 1.38653 * 119.99833 * 185.22959 * 20 19 18 23 23 N 1.31559 * 120.00501 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99792 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47134 * 60.00074 * 24 22 20 26 26 H 1.48495 * 109.46933 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47304 * 300.00020 * 24 22 20 28 28 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47268 * 300.00820 * 1 2 3 30 30 H 1.09005 * 109.46767 * 60.00310 * 1 2 3 31 31 H 1.08992 * 109.47548 * 239.99490 * 2 1 3 32 32 H 1.09005 * 109.46767 * 119.99690 * 2 1 3 33 33 H 1.08996 * 109.47502 * 24.21366 * 4 3 2 34 34 H 1.08998 * 109.47106 * 144.21319 * 4 3 2 35 35 H 1.09005 * 109.47284 * 184.99818 * 5 4 3 36 36 H 1.08998 * 109.47312 * 304.99724 * 5 4 3 37 37 H 0.96697 * 114.00147 * 180.02562 * 6 5 4 38 38 H 0.97004 * 120.00003 * 5.28671 * 11 9 7 39 39 H 1.08002 * 119.98748 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.90409 * 180.29810 * 14 13 12 41 41 H 1.07994 * 120.01033 * 180.02562 * 17 15 14 42 42 H 0.96991 * 120.00209 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.1084 -1.2640 5 6 3.6038 2.0015 -1.7558 6 8 3.9010 0.6392 -2.0685 7 6 2.3383 1.9828 1.1627 8 8 2.1213 1.4211 2.2165 9 6 2.9540 3.3431 1.1548 10 8 3.0916 3.9409 0.1073 11 7 3.3569 3.9072 2.3106 12 6 3.8309 5.2225 2.3186 13 6 3.2860 6.1637 1.4563 14 6 3.7511 7.4643 1.4699 15 6 4.7704 7.8310 2.3342 16 9 5.2252 9.1031 2.3386 17 6 5.3231 6.8978 3.1930 18 6 4.8571 5.5909 3.1897 19 8 5.3975 4.6735 4.0318 20 6 6.3048 5.1204 4.9229 21 1 6.5093 6.1779 5.0013 22 6 6.9757 4.2222 5.7388 23 7 6.7264 2.9340 5.6437 24 14 8.2336 4.8414 6.9733 25 1 7.5755 5.7702 7.9271 26 1 8.8043 3.6904 7.7180 27 1 9.3203 5.5559 6.2566 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.4891 1.6770 -2.0078 34 1 1.9041 3.1569 -1.1102 35 1 3.7302 2.6149 -2.6480 36 1 4.2800 2.3513 -0.9757 37 1 4.8028 0.4965 -2.3870 38 1 3.3181 3.4005 3.1370 39 1 2.4945 5.8803 0.7784 40 1 3.3224 8.1964 0.8014 41 1 6.1170 7.1864 3.8659 42 1 7.1954 2.3057 6.2147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761026456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:37 Heat of formation + Delta-G solvation = -146.783612 kcal Electronic energy + Delta-G solvation = -30037.898962 eV Core-core repulsion = 25513.445194 eV Total energy + Delta-G solvation = -4524.453768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.35337 -40.95223 -39.50452 -38.23654 -37.31899 -36.42973 -35.63388 -34.14348 -32.48254 -31.55376 -29.60792 -28.94185 -28.52107 -25.65866 -25.18715 -23.28632 -22.88570 -22.04640 -21.05192 -19.57082 -18.43986 -18.09940 -17.56461 -17.46636 -17.02419 -16.31512 -16.03122 -15.78508 -15.33302 -15.10619 -14.97496 -14.40798 -14.37128 -14.30973 -14.16361 -13.77712 -13.67358 -13.61499 -13.37442 -13.31885 -12.67593 -12.57549 -12.36823 -12.17922 -12.04579 -11.75197 -11.53562 -11.45020 -11.18992 -11.06595 -10.93273 -10.79045 -10.58459 -10.07612 -9.88564 -9.72592 -9.17855 -9.01313 -8.81679 -8.01044 -7.26161 -6.64331 -4.23732 1.32819 1.94619 2.01959 2.45431 3.04928 3.05702 3.08974 3.35200 3.58987 3.80828 4.22163 4.22960 4.49991 4.74268 4.91086 4.96365 5.00525 5.05774 5.08672 5.25084 5.27081 5.41247 5.44106 5.64506 5.66082 5.72248 5.79512 5.82986 5.90905 6.07903 6.09495 6.36103 6.40035 6.61701 6.78968 6.80796 6.84576 7.03558 7.12426 7.45793 7.53369 7.58410 7.77141 7.90641 8.21696 8.79392 9.38221 10.51545 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003649 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.971612 B = 7672.292276 C = 9342.927325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 N -0.579 5.579 4 C 0.106 3.894 5 C 0.063 3.937 6 O -0.578 6.578 7 C 0.508 3.492 8 O -0.512 6.512 9 C 0.501 3.499 10 O -0.519 6.519 11 N -0.611 5.611 12 C 0.047 3.953 13 C -0.042 4.042 14 C -0.232 4.232 15 C 0.137 3.863 16 F -0.150 7.150 17 C -0.258 4.258 18 C 0.163 3.837 19 O -0.161 6.161 20 C -0.397 4.397 21 H 0.096 0.904 22 C 0.045 3.955 23 N -0.851 5.851 24 Si 0.944 3.056 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.268 1.268 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.377 0.623 38 H 0.426 0.574 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 -1.906 -12.220 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.313 5.313 4 C -0.016 4.016 5 C -0.015 4.015 6 O -0.383 6.383 7 C 0.290 3.710 8 O -0.387 6.387 9 C 0.283 3.717 10 O -0.397 6.397 11 N -0.256 5.256 12 C -0.047 4.047 13 C -0.062 4.062 14 C -0.252 4.252 15 C 0.118 3.882 16 F -0.128 7.128 17 C -0.279 4.279 18 C 0.106 3.894 19 O -0.063 6.063 20 C -0.472 4.472 21 H 0.113 0.887 22 C -0.162 4.162 23 N -0.484 5.484 24 Si 0.768 3.232 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.193 1.193 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.224 0.776 38 H 0.264 0.736 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.609 -2.366 -12.015 14.969 hybrid contribution 1.474 0.450 0.750 1.714 sum -7.136 -1.916 -11.264 13.471 Atomic orbital electron populations 1.22138 0.95838 1.02246 1.02290 1.21561 0.94104 0.81378 1.04028 1.47709 1.63296 1.14269 1.06042 1.22123 0.95682 0.99484 0.84330 1.22650 0.97177 0.82385 0.99310 1.86420 1.35784 1.27498 1.88644 1.20096 0.79822 0.86717 0.84381 1.90792 1.52347 1.65274 1.30305 1.20049 0.80442 0.86876 0.84302 1.90645 1.54659 1.64336 1.30039 1.42834 1.59210 1.12699 1.10867 1.16804 0.99558 0.84080 1.04256 1.20424 0.98178 0.90597 0.96973 1.20415 1.02585 0.97225 1.05020 1.17476 0.95170 0.78329 0.97257 1.91419 1.88317 1.37292 1.95797 1.20868 1.07633 0.92977 1.06453 1.18793 0.90859 0.89068 0.90691 1.83950 1.50431 1.32064 1.39866 1.21334 1.18310 0.94282 1.13312 0.88686 1.25340 0.97833 0.94876 0.98104 1.70011 1.39671 1.01303 1.37412 0.85731 0.79602 0.78462 0.79442 1.19240 1.20095 1.19296 0.91478 0.92198 0.92594 0.89453 0.89666 0.90268 0.85967 0.92656 0.92564 0.77591 0.73570 0.84692 0.85753 0.83780 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.11 1.28 6.07 -4.04 -0.02 1.25 16 3 N -0.58 -7.66 2.43 -174.25 -0.42 -8.08 16 4 C 0.11 1.20 5.38 -4.04 -0.02 1.17 16 5 C 0.06 0.72 6.72 37.16 0.25 0.97 16 6 O -0.58 -6.29 13.05 -35.23 -0.46 -6.75 16 7 C 0.51 8.27 7.68 -11.65 -0.09 8.18 16 8 O -0.51 -9.61 16.06 5.48 0.09 -9.52 16 9 C 0.50 8.56 7.19 -11.65 -0.08 8.47 16 10 O -0.52 -8.52 9.45 5.46 0.05 -8.47 16 11 N -0.61 -11.62 5.16 -10.17 -0.05 -11.67 16 12 C 0.05 0.94 6.27 -83.52 -0.52 0.42 16 13 C -0.04 -0.73 8.65 -39.41 -0.34 -1.08 16 14 C -0.23 -4.00 10.02 -39.49 -0.40 -4.39 16 15 C 0.14 2.61 7.30 -39.41 -0.29 2.32 16 16 F -0.15 -2.72 17.26 2.25 0.04 -2.68 16 17 C -0.26 -5.44 9.11 -39.35 -0.36 -5.80 16 18 C 0.16 3.68 6.67 -38.90 -0.26 3.42 16 19 O -0.16 -4.21 9.32 0.15 0.00 -4.21 16 20 C -0.40 -10.38 9.45 30.89 0.29 -10.08 16 21 H 0.10 2.30 5.28 -52.49 -0.28 2.02 16 22 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 23 N -0.85 -23.56 13.67 55.48 0.76 -22.81 16 24 Si 0.94 19.55 29.55 -169.99 -5.02 14.52 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.91 7.59 -51.93 -0.39 0.52 16 32 H 0.08 1.10 7.36 -51.93 -0.38 0.72 16 33 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 34 H 0.12 1.43 5.69 -51.93 -0.30 1.13 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.79 6.68 -51.93 -0.35 0.44 16 37 H 0.38 2.72 9.12 45.56 0.42 3.14 16 38 H 0.43 8.47 8.07 -40.82 -0.33 8.14 16 39 H 0.14 2.17 6.51 -52.49 -0.34 1.83 16 40 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.14 3.03 5.70 -52.49 -0.30 2.74 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -30.06 362.47 -5.03 -35.09 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -3.92 Total: 14.40 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.56 Total: 4.71 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.28 Total: -42.56 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.32 Total: -28.95 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.06 -5.03 -35.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761026456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.693 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds