Wall clock time and date at job start Tue Mar 31 2020 23:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47296 * 2 1 4 4 O 1.45201 * 109.46639 * 240.00490 * 2 1 3 5 5 C 1.34814 * 117.00060 * 90.00046 * 4 2 1 6 6 O 1.21552 * 120.00145 * 359.97438 * 5 4 2 7 7 C 1.47006 * 120.00243 * 179.97438 * 5 4 2 8 8 C 1.38489 * 126.89826 * 179.68454 * 7 5 4 9 9 N 1.48011 * 127.32064 * 359.97438 * 8 7 5 10 10 O 1.21798 * 120.00212 * 179.97438 * 9 8 7 11 11 O 1.21807 * 120.00016 * 359.97438 * 9 8 7 12 12 C 1.39640 * 105.35735 * 179.86006 * 8 7 5 13 13 N 1.30881 * 107.87978 * 0.41311 * 12 8 7 14 14 N 1.28443 * 110.94169 * 359.73149 * 13 12 8 15 15 C 1.46507 * 125.19350 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47572 * 120.00492 * 2 1 3 17 17 O 1.21274 * 119.99996 * 119.99724 * 16 2 1 18 18 N 1.34778 * 119.99801 * 300.00029 * 16 2 1 19 19 C 1.46499 * 119.99947 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00001 * 180.02562 * 18 16 2 21 21 C 1.50694 * 109.47374 * 89.99864 * 20 18 16 22 22 H 1.08003 * 119.99838 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99936 * 180.02562 * 21 20 18 24 24 N 1.31512 * 120.00390 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00100 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46893 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47097 * 119.99822 * 25 23 21 28 28 H 1.48494 * 109.47465 * 240.00383 * 25 23 21 29 29 H 1.09003 * 109.46609 * 299.99149 * 1 2 3 30 30 H 1.08998 * 109.47578 * 59.99140 * 1 2 3 31 31 H 1.08999 * 109.46858 * 180.02562 * 1 2 3 32 32 H 1.08001 * 126.06135 * 180.14662 * 12 8 7 33 33 H 1.08997 * 109.47016 * 269.96251 * 15 14 13 34 34 H 1.09001 * 109.46622 * 29.96712 * 15 14 13 35 35 H 1.09001 * 109.46677 * 149.96102 * 15 14 13 36 36 H 1.09004 * 109.47704 * 90.00098 * 19 18 16 37 37 H 1.09002 * 109.47462 * 210.00143 * 19 18 16 38 38 H 1.09000 * 109.47268 * 329.99773 * 19 18 16 39 39 H 1.09006 * 109.46939 * 210.00251 * 20 18 16 40 40 H 1.09000 * 109.46946 * 329.99585 * 20 18 16 41 41 H 0.96997 * 120.00293 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1857 5 6 2.2179 0.0674 -2.2859 6 8 1.9968 1.2623 -2.2552 7 6 2.7077 -0.5578 -3.5230 8 6 2.9594 0.0727 -4.7301 9 7 2.7922 1.5095 -5.0440 10 8 3.0558 1.9240 -6.1585 11 8 2.3911 2.2773 -4.1877 12 6 3.4069 -0.9347 -5.5873 13 7 3.4021 -2.0610 -4.9207 14 7 3.0003 -1.8788 -3.7144 15 6 2.8753 -2.9272 -2.6986 16 6 2.0325 -0.7105 1.2304 17 8 2.7297 -1.6965 1.1190 18 7 1.7069 -0.2501 2.4545 19 6 0.8651 0.9413 2.5891 20 6 2.1958 -0.9404 3.6506 21 6 3.5231 -0.3564 4.0605 22 1 3.9592 0.4483 3.4871 23 6 4.1813 -0.8500 5.1669 24 7 3.6510 -1.8309 5.8642 25 14 5.8270 -0.1265 5.6746 26 1 6.2032 0.9575 4.7318 27 1 5.7215 0.4274 7.0484 28 1 6.8643 -1.1888 5.6474 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.7005 -0.8078 -6.6188 33 1 1.8754 -3.3586 -2.7430 34 1 3.6154 -3.7050 -2.8864 35 1 3.0423 -2.4976 -1.7108 36 1 -0.1831 0.6438 2.6223 37 1 1.1229 1.4665 3.5087 38 1 1.0289 1.6001 1.7363 39 1 1.4778 -0.8153 4.4613 40 1 2.3172 -2.0017 3.4335 41 1 4.1143 -2.1784 6.6424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766969625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:17 Heat of formation + Delta-G solvation = -37.479872 kcal Electronic energy + Delta-G solvation = -30202.170795 eV Core-core repulsion = 25702.376754 eV Total energy + Delta-G solvation = -4499.794040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.60506 -42.90181 -42.01323 -40.56902 -38.00797 -37.54545 -36.74491 -35.19905 -34.91204 -33.55758 -32.72473 -29.64283 -29.36566 -27.78446 -27.42446 -26.24854 -25.48466 -23.86309 -23.19716 -21.98571 -20.63439 -20.35824 -19.74304 -19.23975 -18.88587 -18.70939 -18.24310 -17.89654 -17.69956 -17.19708 -17.02613 -16.64591 -16.44227 -15.95109 -15.42714 -14.95339 -14.83090 -14.42701 -14.23063 -14.11897 -13.93107 -13.73326 -13.57399 -13.34411 -13.16522 -13.03435 -12.84668 -12.76043 -12.63028 -12.44970 -12.28791 -12.24005 -12.21926 -12.08722 -11.90944 -11.70354 -11.27852 -10.97117 -10.67242 -10.66678 -9.53238 -8.25733 -6.39645 -1.42296 -0.18951 -0.04434 0.62606 0.85071 1.03350 1.24126 1.35436 1.37327 1.48258 1.58191 2.17174 2.37732 2.69262 2.81042 3.04848 3.16525 3.32048 3.48441 3.70343 3.77781 4.12580 4.13360 4.30012 4.41323 4.45517 4.58379 4.61545 4.65190 4.78579 4.85973 4.91155 4.99126 5.10590 5.16739 5.20620 5.49206 5.75552 6.01190 6.02072 6.16185 6.50695 6.56774 6.69587 7.16388 7.33646 8.81444 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002854 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.611272 B = 9808.545276 C =10027.165594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 H 0.119 0.881 4 O -0.327 6.327 5 C 0.520 3.480 6 O -0.449 6.449 7 C 0.055 3.945 8 C -0.117 4.117 9 N 0.055 4.945 10 O -0.147 6.147 11 O -0.159 6.159 12 C 0.092 3.908 13 N -0.248 5.248 14 N -0.219 5.219 15 C 0.064 3.936 16 C 0.504 3.496 17 O -0.573 6.573 18 N -0.597 5.597 19 C 0.065 3.935 20 C 0.261 3.739 21 C -0.546 4.546 22 H 0.051 0.949 23 C 0.013 3.987 24 N -0.924 5.924 25 Si 0.962 3.038 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.281 1.281 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.253 0.747 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.033 0.967 40 H 0.006 0.994 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 0.915 -20.009 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 H 0.137 0.863 4 O -0.243 6.243 5 C 0.359 3.641 6 O -0.331 6.331 7 C -0.080 4.080 8 C -0.215 4.215 9 N 0.573 4.427 10 O -0.364 6.364 11 O -0.371 6.371 12 C -0.083 4.083 13 N -0.081 5.081 14 N -0.006 5.006 15 C -0.073 4.073 16 C 0.290 3.710 17 O -0.452 6.452 18 N -0.329 5.329 19 C -0.077 4.077 20 C 0.140 3.860 21 C -0.584 4.584 22 H 0.070 0.930 23 C -0.187 4.187 24 N -0.564 5.564 25 Si 0.787 3.213 26 H -0.195 1.195 27 H -0.194 1.194 28 H -0.207 1.207 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.269 0.731 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.024 0.976 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.342 -1.257 -19.614 20.652 hybrid contribution 0.783 1.395 0.779 1.779 sum -5.559 0.138 -18.835 19.638 Atomic orbital electron populations 1.22452 0.88795 1.05010 1.06377 1.22704 0.98092 0.96981 0.79870 0.86325 1.86622 1.77199 1.40945 1.19490 1.19572 0.76424 0.85263 0.82858 1.91129 1.45014 1.14114 1.82837 1.20271 1.07510 0.86920 0.93283 1.21606 1.19434 0.84147 0.96297 1.42527 0.98175 1.01553 1.00402 1.94504 1.53135 1.80477 1.08263 1.94777 1.47669 1.52470 1.42151 1.24324 0.97879 0.83656 1.02449 1.73676 1.17502 1.25195 0.91720 1.46451 1.38832 1.05608 1.09721 1.23151 1.08036 0.88348 0.87733 1.20423 0.80772 0.84898 0.84875 1.90648 1.39375 1.28457 1.86757 1.48009 1.49986 1.29471 1.05419 1.22276 0.94865 0.86330 1.04200 1.18849 0.93742 0.91941 0.81423 1.21726 1.06025 1.19165 1.11526 0.93045 1.25756 1.01481 0.95207 0.96233 1.70026 1.40513 1.26980 1.18864 0.85447 0.79140 0.78290 0.78415 1.19503 1.19428 1.20716 0.86732 0.89527 0.90618 0.73103 0.85572 0.84669 0.87433 0.89372 0.90803 0.89277 0.94890 0.97568 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.19 71.98 0.66 -2.66 16 2 C 0.08 2.25 2.18 29.85 0.07 2.32 16 3 H 0.12 3.19 6.42 -2.38 -0.02 3.18 16 4 O -0.33 -8.97 6.88 -50.86 -0.35 -9.32 16 5 C 0.52 14.14 7.91 70.12 0.55 14.69 16 6 O -0.45 -13.91 12.65 27.51 0.35 -13.56 16 7 C 0.05 1.30 6.96 40.75 0.28 1.58 16 8 C -0.12 -2.70 7.29 36.78 0.27 -2.43 16 9 N 0.06 1.52 4.45 -45.52 -0.20 1.32 16 10 O -0.15 -3.80 19.10 18.89 0.36 -3.44 16 11 O -0.16 -5.15 15.56 26.34 0.41 -4.74 16 12 C 0.09 1.47 11.82 85.17 1.01 2.47 16 13 N -0.25 -4.26 11.90 -57.15 -0.68 -4.94 16 14 N -0.22 -4.13 3.75 -356.05 -1.34 -5.46 16 15 C 0.06 0.94 10.81 127.77 1.38 2.32 16 16 C 0.50 19.24 7.15 87.66 0.63 19.86 16 17 O -0.57 -26.97 16.08 15.79 0.25 -26.72 16 18 N -0.60 -23.05 2.86 -851.14 -2.43 -25.48 16 19 C 0.06 1.70 8.80 127.77 1.12 2.82 16 20 C 0.26 13.12 5.16 85.63 0.44 13.56 16 21 C -0.55 -30.14 9.39 25.60 0.24 -29.90 16 22 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 23 C 0.01 0.71 5.46 84.65 0.46 1.17 16 24 N -0.92 -53.65 13.29 21.45 0.28 -53.37 16 25 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 29 H 0.11 1.84 4.53 -2.39 -0.01 1.83 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.25 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 2.20 6.15 -2.39 -0.01 2.19 16 36 H 0.09 1.72 6.95 -2.39 -0.02 1.71 16 37 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 38 H 0.09 1.84 6.01 -2.39 -0.01 1.82 16 39 H 0.03 1.66 8.07 -2.38 -0.02 1.64 16 40 H 0.01 0.36 7.42 -2.39 -0.02 0.34 16 41 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -76.55 359.88 6.90 -69.65 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.10 Total: 4.53 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 7.12 Total: 25.81 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -4.36 Total: -87.94 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: 1.02 Total: -57.78 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -76.55 6.90 -69.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766969625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.167 kcal (2) G-P(sol) polarization free energy of solvation -76.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds