Wall clock time and date at job start Tue Mar 31 2020 23:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31282 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47043 * 300.00071 * 3 2 1 6 6 H 1.48506 * 109.47037 * 59.99646 * 3 2 1 7 7 C 1.39010 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99882 * 180.02562 * 7 2 1 9 9 N 1.37295 * 119.99455 * 359.72122 * 7 2 1 10 10 C 1.36439 * 126.05166 * 180.27609 * 9 7 2 11 11 C 1.35792 * 107.50000 * 179.97438 * 10 9 7 12 12 N 1.40297 * 126.10242 * 179.97438 * 11 10 9 13 13 C 1.34767 * 120.00067 * 179.97438 * 12 11 10 14 14 O 1.21420 * 120.00330 * 359.97438 * 13 12 11 15 15 C 1.49216 * 120.00093 * 179.97438 * 13 12 11 16 16 O 1.21389 * 119.99758 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99852 * 180.02562 * 15 13 12 18 18 C 1.39728 * 119.99949 * 175.38318 * 17 15 13 19 19 C 1.38930 * 120.07856 * 214.82313 * 18 17 15 20 20 C 1.38093 * 119.92666 * 179.74814 * 19 18 17 21 21 C 1.38295 * 120.07332 * 0.52002 * 20 19 18 22 22 C 1.50700 * 119.92249 * 179.76751 * 21 20 19 23 23 C 1.53000 * 117.49819 * 8.73242 * 22 21 20 24 24 C 1.52998 * 117.50097 * 300.07310 * 22 21 20 25 25 C 1.38296 * 120.15556 * 359.75502 * 21 20 19 26 26 C 1.38095 * 120.06952 * 359.97185 * 25 21 20 27 27 C 1.40717 * 107.79535 * 359.97438 * 11 10 9 28 28 N 1.30883 * 108.37971 * 359.76000 * 27 11 10 29 29 H 0.96998 * 119.99866 * 0.02562 * 1 2 3 30 30 H 1.08002 * 126.25184 * 359.94417 * 10 9 7 31 31 H 0.97006 * 119.99715 * 359.97438 * 12 11 10 32 32 H 0.96997 * 120.00401 * 355.37476 * 17 15 13 33 33 H 1.08003 * 120.03657 * 359.97438 * 19 18 17 34 34 H 1.07999 * 119.96454 * 180.25412 * 20 19 18 35 35 H 1.08999 * 115.54967 * 154.39845 * 22 21 20 36 36 H 1.08995 * 117.50096 * 359.97438 * 23 22 21 37 37 H 1.09001 * 117.49839 * 145.02299 * 23 22 21 38 38 H 1.09009 * 117.49547 * 214.98174 * 24 22 21 39 39 H 1.09003 * 117.49904 * 359.97104 * 24 22 21 40 40 H 1.07997 * 119.96457 * 179.97438 * 25 21 20 41 41 H 1.08006 * 120.03290 * 180.02562 * 26 25 21 42 42 H 1.08004 * 125.81339 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2038 -0.0001 9 7 1.3214 -2.3928 0.0047 10 6 1.8751 -3.6397 0.0102 11 6 0.8573 -4.5386 0.0147 12 7 0.9879 -5.9354 0.0206 13 6 -0.1114 -6.7150 0.0252 14 8 -1.2149 -6.2085 0.0248 15 6 0.0276 -8.2007 0.0308 16 8 1.1308 -8.7070 0.0308 17 7 -1.0718 -8.9803 0.0350 18 6 -0.9441 -10.3686 -0.0572 19 6 -1.8948 -11.1111 -0.7465 20 6 -1.7627 -12.4825 -0.8400 21 6 -0.6913 -13.1181 -0.2394 22 6 -0.5534 -14.6155 -0.3392 23 6 -1.5072 -15.3515 -1.2822 24 6 -1.6867 -15.4691 0.2334 25 6 0.2538 -12.3828 0.4524 26 6 0.1308 -11.0105 0.5451 27 6 -0.3519 -3.8189 0.0126 28 7 -0.0714 -2.5405 0.0122 29 1 -0.4850 0.8400 -0.0004 30 1 2.9303 -3.8699 0.0103 31 1 1.8695 -6.3401 0.0213 32 1 -1.9517 -8.5776 0.1020 33 1 -2.7343 -10.6159 -1.2117 34 1 -2.4992 -13.0598 -1.3792 35 1 0.4621 -15.0010 -0.2488 36 1 -2.2347 -14.7528 -1.8302 37 1 -1.1193 -16.2216 -1.8120 38 1 -1.4167 -16.4165 0.7001 39 1 -2.5319 -14.9477 0.6826 40 1 1.0890 -12.8824 0.9206 41 1 0.8696 -10.4368 1.0851 42 1 -1.3429 -4.2483 0.0155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781980786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:58 Heat of formation + Delta-G solvation = 77.591910 kcal Electronic energy + Delta-G solvation = -27039.077748 eV Core-core repulsion = 22987.415609 eV Total energy + Delta-G solvation = -4051.662139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05764 -39.99989 -39.35143 -38.15400 -37.03371 -35.04083 -34.13275 -33.21027 -31.19248 -30.38647 -29.81352 -28.09747 -25.75999 -24.67394 -23.51360 -22.90869 -22.55492 -21.20902 -20.78363 -20.11889 -19.54859 -18.59745 -17.59578 -17.51066 -16.60456 -16.09899 -15.92396 -15.54839 -15.25965 -15.12717 -14.83992 -14.51415 -14.20522 -13.96998 -13.72265 -13.52787 -13.24617 -13.06987 -13.03196 -12.98196 -12.06415 -11.83240 -11.76930 -11.65287 -11.58979 -11.33418 -11.25195 -11.04997 -10.91030 -10.65541 -10.55259 -10.37347 -10.21846 -9.28729 -9.28225 -9.10245 -8.92749 -8.21092 -8.17546 -6.84074 -6.64423 -4.32033 0.86919 1.19864 1.60879 2.42517 2.88917 3.01813 3.07739 3.16539 3.35136 3.64272 3.67851 3.77915 3.86531 4.23637 4.30962 4.47757 4.50982 4.57982 4.66598 4.74786 4.91709 4.94447 4.96498 5.14706 5.26003 5.33528 5.40030 5.43336 5.68656 5.70441 5.82040 6.05347 6.09147 6.15476 6.25089 6.29996 6.39784 6.67716 6.76678 6.84198 6.85145 7.06659 7.11743 7.63856 7.77316 7.98732 8.12518 8.39100 8.63325 9.26461 9.54908 10.31347 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.052623 B = 0.001670 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.958788 B =16759.394779 C =17134.905407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.119 0.881 9 N -0.137 5.137 10 C -0.076 4.076 11 C -0.072 4.072 12 N -0.579 5.579 13 C 0.485 3.515 14 O -0.520 6.520 15 C 0.516 3.484 16 O -0.508 6.508 17 N -0.648 5.648 18 C 0.141 3.859 19 C -0.136 4.136 20 C -0.103 4.103 21 C -0.069 4.069 22 C -0.115 4.115 23 C -0.178 4.178 24 C -0.171 4.171 25 C -0.095 4.095 26 C -0.116 4.116 27 C -0.025 4.025 28 N -0.260 5.260 29 H 0.276 0.724 30 H 0.150 0.850 31 H 0.410 0.590 32 H 0.424 0.576 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -24.569 -0.277 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.454 4.454 8 H 0.137 0.863 9 N 0.096 4.904 10 C -0.228 4.228 11 C -0.178 4.178 12 N -0.221 5.221 13 C 0.265 3.735 14 O -0.398 6.398 15 C 0.299 3.701 16 O -0.382 6.382 17 N -0.295 5.295 18 C 0.047 3.953 19 C -0.156 4.156 20 C -0.122 4.122 21 C -0.069 4.069 22 C -0.133 4.133 23 C -0.215 4.215 24 C -0.208 4.208 25 C -0.114 4.114 26 C -0.136 4.136 27 C -0.200 4.200 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.245 0.755 32 H 0.262 0.738 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.240 -23.131 -0.287 23.241 hybrid contribution 0.829 -0.175 -0.018 0.848 sum -1.410 -23.306 -0.305 23.350 Atomic orbital electron populations 1.70213 1.06196 1.28116 1.34733 1.25679 0.95738 1.00402 0.95324 0.85733 0.79678 0.80029 0.78551 1.18587 1.19825 1.19834 1.19998 0.91829 0.80437 1.53125 0.86316 1.44583 1.04107 1.03395 1.38270 1.21304 0.96986 0.85176 1.19316 1.17242 0.94700 0.80436 1.25425 1.42110 1.08511 1.04680 1.66798 1.19383 0.85490 0.86336 0.82274 1.90678 1.25329 1.74019 1.49756 1.20487 0.84383 0.88633 0.76570 1.90734 1.25510 1.75411 1.46569 1.43132 1.10894 1.04433 1.71020 1.17780 0.97331 0.82044 0.98126 1.20917 1.00318 0.94228 1.00181 1.20791 0.98013 0.93577 0.99797 1.19123 0.95513 0.93260 0.99033 1.21010 0.96427 0.90184 1.05667 1.23079 1.02802 1.02693 0.92937 1.23045 1.00226 1.01250 0.96234 1.20839 0.98703 0.93109 0.98720 1.21316 0.98455 0.94379 0.99420 1.24152 0.97922 0.90767 1.07208 1.78276 0.90094 1.14942 1.25803 0.91346 0.83284 0.75498 0.73781 0.85322 0.85580 0.86981 0.88320 0.88485 0.88527 0.88536 0.85624 0.84064 0.80535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.92 11.81 55.50 0.66 -20.26 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.49 29.55 -169.99 -5.02 13.47 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.32 -8.32 10.25 -14.82 -0.15 -8.47 16 8 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -3.68 3.73 -11.40 -0.04 -3.72 16 10 C -0.08 -1.76 11.50 -16.38 -0.19 -1.95 16 11 C -0.07 -1.64 6.90 -83.92 -0.58 -2.22 16 12 N -0.58 -10.61 5.45 -10.48 -0.06 -10.67 16 13 C 0.48 8.51 7.85 -11.70 -0.09 8.42 16 14 O -0.52 -10.21 13.62 5.44 0.07 -10.14 16 15 C 0.52 7.67 7.72 -11.70 -0.09 7.58 16 16 O -0.51 -8.03 13.91 5.46 0.08 -7.96 16 17 N -0.65 -8.00 5.32 -10.34 -0.05 -8.06 16 18 C 0.14 1.65 6.30 -83.75 -0.53 1.12 16 19 C -0.14 -1.32 9.97 -39.38 -0.39 -1.71 16 20 C -0.10 -0.91 9.29 -39.61 -0.37 -1.28 16 21 C -0.07 -0.62 5.61 -104.58 -0.59 -1.21 16 22 C -0.11 -0.81 6.04 -91.77 -0.55 -1.37 16 23 C -0.18 -1.04 9.86 -26.69 -0.26 -1.31 16 24 C -0.17 -1.01 10.16 -26.70 -0.27 -1.29 16 25 C -0.10 -0.94 9.73 -39.61 -0.39 -1.33 16 26 C -0.12 -1.37 8.70 -39.38 -0.34 -1.71 16 27 C -0.02 -0.63 10.84 -17.02 -0.18 -0.82 16 28 N -0.26 -7.38 10.39 30.81 0.32 -7.06 16 29 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.15 2.88 8.06 -52.49 -0.42 2.45 16 31 H 0.41 6.41 8.29 -40.82 -0.34 6.07 16 32 H 0.42 4.60 8.29 -40.82 -0.34 4.27 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.13 0.85 6.01 -52.49 -0.32 0.54 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.55 6.17 -51.93 -0.32 0.23 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.14 1.81 6.22 -52.48 -0.33 1.49 16 42 H 0.18 4.36 5.92 -52.48 -0.31 4.05 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -32.03 365.11 -8.08 -40.11 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -4.46 Total: 15.24 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -5.07 Total: -6.45 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.82 Total: -49.77 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.15 Total: -18.09 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.03 -8.08 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781980786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.700 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds