Wall clock time and date at job start Tue Mar 31 2020 23:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99967 * 2 1 4 4 H 1.08999 * 109.47403 * 29.99110 * 3 2 1 5 5 C 1.53009 * 109.46826 * 269.99549 * 3 2 1 6 6 C 1.53001 * 109.47296 * 150.00144 * 3 2 1 7 7 N 1.46505 * 109.46782 * 299.99291 * 6 3 2 8 8 C 1.34777 * 119.99674 * 179.97438 * 7 6 3 9 9 O 1.21362 * 120.00240 * 0.02562 * 8 7 6 10 10 C 1.49312 * 119.99527 * 180.02562 * 8 7 6 11 11 O 1.21399 * 120.00151 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99527 * 179.97438 * 10 8 7 13 13 C 1.39810 * 119.99828 * 185.60851 * 12 10 8 14 14 C 1.38800 * 120.07979 * 34.10386 * 13 12 10 15 15 C 1.38144 * 120.01149 * 179.97438 * 14 13 12 16 16 C 1.38593 * 120.19079 * 359.97438 * 15 14 13 17 17 F 1.35094 * 119.91518 * 180.02562 * 16 15 14 18 18 C 1.38337 * 120.16559 * 0.04221 * 16 15 14 19 19 C 1.38744 * 119.98461 * 359.93835 * 18 16 15 20 20 O 1.35750 * 120.09177 * 180.31580 * 19 18 16 21 21 C 1.34799 * 117.00340 * 354.20675 * 20 19 18 22 22 H 1.08000 * 119.99707 * 354.52729 * 21 20 19 23 23 C 1.38650 * 120.00167 * 174.52297 * 21 20 19 24 24 N 1.31562 * 120.00098 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00143 * 179.97438 * 23 21 20 26 26 H 1.48511 * 109.47035 * 60.00118 * 25 23 21 27 27 H 1.48493 * 109.47540 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47241 * 300.00674 * 25 23 21 29 29 H 1.08997 * 109.47516 * 300.00483 * 1 2 3 30 30 H 1.09000 * 109.47099 * 60.00353 * 1 2 3 31 31 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46903 * 60.00145 * 5 3 2 33 33 H 1.08991 * 109.47019 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47078 * 300.00389 * 5 3 2 35 35 H 1.09005 * 109.46858 * 179.97438 * 6 3 2 36 36 H 1.08997 * 109.47225 * 59.99233 * 6 3 2 37 37 H 0.96999 * 119.99787 * 0.02562 * 7 6 3 38 38 H 0.97001 * 120.00196 * 5.61479 * 12 10 8 39 39 H 1.08000 * 119.99553 * 359.97438 * 14 13 12 40 40 H 1.07997 * 119.90962 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.00896 * 179.97438 * 18 16 15 42 42 H 0.97000 * 120.00099 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3589 1.2633 0.7212 7 7 3.1602 0.8173 2.1025 8 6 4.2162 0.7032 2.9322 9 8 5.3315 0.9703 2.5353 10 6 4.0137 0.2481 4.3398 11 8 2.8981 -0.0195 4.7368 12 7 5.0697 0.1335 5.1694 13 6 4.8984 -0.4032 6.4490 14 6 3.9663 -1.4092 6.6623 15 6 3.7986 -1.9389 7.9271 16 6 4.5594 -1.4690 8.9860 17 9 4.3912 -1.9913 10.2205 18 6 5.4904 -0.4663 8.7820 19 6 5.6649 0.0704 7.5146 20 8 6.5824 1.0500 7.3107 21 6 7.2061 1.5409 8.4002 22 1 6.9053 1.2179 9.3859 23 6 8.2337 2.4603 8.2555 24 7 8.5998 2.8541 7.0548 25 14 9.0974 3.1411 9.7654 26 1 9.7179 2.0263 10.5255 27 1 10.1504 4.0994 9.3435 28 1 8.1103 3.8390 10.6278 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2568 1.8013 -1.9565 33 1 2.6606 2.7672 -1.4426 34 1 2.8829 1.0773 -1.9563 35 1 3.8024 2.2590 0.7208 36 1 4.0241 0.5693 0.2075 37 1 2.2688 0.6035 2.4196 38 1 5.9486 0.4234 4.8787 39 1 3.3720 -1.7780 5.8394 40 1 3.0731 -2.7219 8.0912 41 1 6.0816 -0.1018 9.6091 42 1 9.3185 3.4976 6.9535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786010092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:35 Heat of formation + Delta-G solvation = -156.692257 kcal Electronic energy + Delta-G solvation = -28931.366637 eV Core-core repulsion = 24406.483198 eV Total energy + Delta-G solvation = -4524.883439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.31680 -40.71393 -39.49715 -38.72473 -38.03234 -36.40202 -35.17690 -34.05144 -32.45229 -32.03157 -29.57272 -28.70875 -27.41717 -26.70049 -25.56282 -24.12532 -22.32672 -21.83501 -21.42533 -20.01406 -18.64858 -18.40483 -17.64389 -17.27068 -16.99840 -16.17722 -16.09753 -15.78302 -15.42260 -15.29204 -15.19613 -15.02022 -14.68126 -14.34349 -14.09669 -13.91456 -13.70395 -13.55568 -13.28178 -13.24794 -12.95504 -12.67326 -12.53996 -12.37752 -12.22777 -11.79780 -11.70299 -11.47041 -11.37584 -11.16374 -10.99398 -10.76942 -10.57210 -10.09884 -9.86979 -9.76273 -9.33295 -9.29915 -8.98616 -7.97568 -7.21521 -6.61706 -4.20586 1.36617 1.97388 2.05600 2.49315 3.06778 3.07565 3.10594 3.30470 3.41675 3.79037 3.84944 4.26367 4.35520 4.59027 4.66493 4.74569 4.79293 4.93298 4.95805 5.03451 5.03992 5.21171 5.29166 5.33254 5.40571 5.48934 5.56048 5.68294 5.74809 5.93726 6.08741 6.15207 6.41312 6.64837 6.76957 6.83126 6.83845 6.86977 7.05963 7.17531 7.51901 7.65484 7.80232 7.92988 8.25285 8.82193 9.41503 10.54330 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.002836 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.687994 B = 9869.184006 C =12013.356894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.381 6.381 3 C 0.072 3.928 4 H 0.070 0.930 5 C -0.172 4.172 6 C 0.121 3.879 7 N -0.699 5.699 8 C 0.511 3.489 9 O -0.512 6.512 10 C 0.501 3.499 11 O -0.520 6.520 12 N -0.613 5.613 13 C 0.049 3.951 14 C -0.043 4.043 15 C -0.231 4.231 16 C 0.137 3.863 17 F -0.150 7.150 18 C -0.258 4.258 19 C 0.163 3.837 20 O -0.162 6.162 21 C -0.396 4.396 22 H 0.095 0.905 23 C 0.044 3.956 24 N -0.852 5.852 25 Si 0.944 3.056 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.268 1.268 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.413 0.587 38 H 0.427 0.573 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.529 -2.946 -12.315 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.300 6.300 3 C 0.014 3.986 4 H 0.088 0.912 5 C -0.230 4.230 6 C -0.003 4.003 7 N -0.354 5.354 8 C 0.292 3.708 9 O -0.386 6.386 10 C 0.283 3.717 11 O -0.397 6.397 12 N -0.259 5.259 13 C -0.045 4.045 14 C -0.064 4.064 15 C -0.251 4.251 16 C 0.117 3.883 17 F -0.128 7.128 18 C -0.279 4.279 19 C 0.106 3.894 20 O -0.064 6.064 21 C -0.471 4.471 22 H 0.113 0.887 23 C -0.162 4.162 24 N -0.485 5.485 25 Si 0.768 3.232 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.193 1.193 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.250 0.750 38 H 0.265 0.735 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.095 -2.810 -12.656 17.730 hybrid contribution 0.182 0.556 1.010 1.168 sum -11.912 -2.255 -11.645 16.811 Atomic orbital electron populations 1.22834 0.80782 1.03078 1.00057 1.87986 1.19877 1.27061 1.95071 1.22407 0.94362 0.85511 0.96331 0.91162 1.22202 1.02910 1.02191 0.95684 1.21622 0.96349 1.01575 0.80708 1.45548 1.10880 1.67391 1.11542 1.20059 0.85067 0.79077 0.86628 1.90811 1.23421 1.47585 1.76815 1.19979 0.85119 0.80043 0.86587 1.90737 1.23224 1.49234 1.76464 1.42804 1.12236 1.58688 1.12131 1.16795 1.04136 1.00638 0.82962 1.20457 0.96226 0.92786 0.96890 1.20421 1.05857 1.06773 0.92091 1.17471 0.96979 0.94535 0.79314 1.91418 1.94713 1.85640 1.41062 1.20865 1.05362 1.02831 0.98857 1.18794 0.91082 0.88658 0.90848 1.83944 1.44912 1.42370 1.35188 1.21323 1.16456 1.24180 0.85137 0.88721 1.25334 0.95935 0.96217 0.98710 1.70014 1.27327 1.29443 1.21704 0.85733 0.78957 0.78991 0.79562 1.19265 1.20117 1.19319 0.93709 0.94046 0.89405 0.91882 0.90999 0.91201 0.89407 0.90009 0.75028 0.73454 0.84659 0.85735 0.83761 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.48 10.09 -35.23 -0.36 -3.83 16 3 C 0.07 0.56 2.81 -26.73 -0.08 0.48 16 4 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 5 C -0.17 -1.04 9.53 37.16 0.35 -0.69 16 6 C 0.12 1.20 5.37 -4.04 -0.02 1.18 16 7 N -0.70 -8.62 5.44 -60.77 -0.33 -8.95 16 8 C 0.51 8.15 7.88 -11.65 -0.09 8.06 16 9 O -0.51 -9.38 16.48 5.49 0.09 -9.29 16 10 C 0.50 8.89 7.61 -11.65 -0.09 8.81 16 11 O -0.52 -9.52 14.23 5.45 0.08 -9.45 16 12 N -0.61 -11.98 5.18 -10.17 -0.05 -12.03 16 13 C 0.05 1.01 6.28 -83.52 -0.52 0.49 16 14 C -0.04 -0.81 8.65 -39.41 -0.34 -1.15 16 15 C -0.23 -4.15 10.02 -39.48 -0.40 -4.54 16 16 C 0.14 2.67 7.30 -39.41 -0.29 2.38 16 17 F -0.15 -2.78 17.26 2.25 0.04 -2.75 16 18 C -0.26 -5.55 9.11 -39.36 -0.36 -5.91 16 19 C 0.16 3.76 6.67 -38.91 -0.26 3.50 16 20 O -0.16 -4.28 9.30 0.14 0.00 -4.28 16 21 C -0.40 -10.45 9.44 30.88 0.29 -10.16 16 22 H 0.10 2.33 5.30 -52.49 -0.28 2.05 16 23 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 24 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 25 Si 0.94 19.72 29.55 -169.99 -5.02 14.69 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 28 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 29 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.33 7.87 -51.93 -0.41 -0.07 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.41 4.68 7.82 -40.82 -0.32 4.36 16 38 H 0.43 8.60 8.03 -40.82 -0.33 8.27 16 39 H 0.14 2.35 6.48 -52.49 -0.34 2.01 16 40 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 41 H 0.14 3.09 5.71 -52.48 -0.30 2.79 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -30.71 371.51 -4.87 -35.59 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.88 Total: 12.83 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.80 Total: 4.78 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.38 Total: -43.89 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.19 Total: -26.86 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.71 -4.87 -35.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786010092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.106 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds