Wall clock time and date at job start Tue Mar 31 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99967 * 2 1 4 4 H 1.08999 * 109.47403 * 29.99110 * 3 2 1 5 5 C 1.53009 * 109.46826 * 269.99549 * 3 2 1 6 6 C 1.53001 * 109.47296 * 150.00144 * 3 2 1 7 7 N 1.46505 * 109.46782 * 299.99291 * 6 3 2 8 8 C 1.34777 * 119.99674 * 179.97438 * 7 6 3 9 9 O 1.21362 * 120.00240 * 0.02562 * 8 7 6 10 10 C 1.49312 * 119.99527 * 180.02562 * 8 7 6 11 11 O 1.21399 * 120.00151 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99527 * 179.97438 * 10 8 7 13 13 C 1.39810 * 119.99828 * 185.60851 * 12 10 8 14 14 C 1.38800 * 120.07979 * 34.10386 * 13 12 10 15 15 C 1.38144 * 120.01149 * 179.97438 * 14 13 12 16 16 C 1.38593 * 120.19079 * 359.97438 * 15 14 13 17 17 F 1.35094 * 119.91518 * 180.02562 * 16 15 14 18 18 C 1.38337 * 120.16559 * 0.04221 * 16 15 14 19 19 C 1.38744 * 119.98461 * 359.93835 * 18 16 15 20 20 O 1.35750 * 120.09177 * 180.31580 * 19 18 16 21 21 C 1.34799 * 117.00340 * 354.20675 * 20 19 18 22 22 H 1.08000 * 119.99707 * 354.52729 * 21 20 19 23 23 C 1.38650 * 120.00167 * 174.52297 * 21 20 19 24 24 N 1.31562 * 120.00098 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00143 * 179.97438 * 23 21 20 26 26 H 1.48511 * 109.47035 * 60.00118 * 25 23 21 27 27 H 1.48493 * 109.47540 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47241 * 300.00674 * 25 23 21 29 29 H 1.08997 * 109.47516 * 300.00483 * 1 2 3 30 30 H 1.09000 * 109.47099 * 60.00353 * 1 2 3 31 31 H 1.09000 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46903 * 60.00145 * 5 3 2 33 33 H 1.08991 * 109.47019 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47078 * 300.00389 * 5 3 2 35 35 H 1.09005 * 109.46858 * 179.97438 * 6 3 2 36 36 H 1.08997 * 109.47225 * 59.99233 * 6 3 2 37 37 H 0.96999 * 119.99787 * 0.02562 * 7 6 3 38 38 H 0.97001 * 120.00196 * 5.61479 * 12 10 8 39 39 H 1.08000 * 119.99553 * 359.97438 * 14 13 12 40 40 H 1.07997 * 119.90962 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.00896 * 179.97438 * 18 16 15 42 42 H 0.97000 * 120.00099 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3589 1.2633 0.7212 7 7 3.1602 0.8173 2.1025 8 6 4.2162 0.7032 2.9322 9 8 5.3315 0.9703 2.5353 10 6 4.0137 0.2481 4.3398 11 8 2.8981 -0.0195 4.7368 12 7 5.0697 0.1335 5.1694 13 6 4.8984 -0.4032 6.4490 14 6 3.9663 -1.4092 6.6623 15 6 3.7986 -1.9389 7.9271 16 6 4.5594 -1.4690 8.9860 17 9 4.3912 -1.9913 10.2205 18 6 5.4904 -0.4663 8.7820 19 6 5.6649 0.0704 7.5146 20 8 6.5824 1.0500 7.3107 21 6 7.2061 1.5409 8.4002 22 1 6.9053 1.2179 9.3859 23 6 8.2337 2.4603 8.2555 24 7 8.5998 2.8541 7.0548 25 14 9.0974 3.1411 9.7654 26 1 9.7179 2.0263 10.5255 27 1 10.1504 4.0994 9.3435 28 1 8.1103 3.8390 10.6278 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2568 1.8013 -1.9565 33 1 2.6606 2.7672 -1.4426 34 1 2.8829 1.0773 -1.9563 35 1 3.8024 2.2590 0.7208 36 1 4.0241 0.5693 0.2075 37 1 2.2688 0.6035 2.4196 38 1 5.9486 0.4234 4.8787 39 1 3.3720 -1.7780 5.8394 40 1 3.0731 -2.7219 8.0912 41 1 6.0816 -0.1018 9.6091 42 1 9.3185 3.4976 6.9535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786010092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:34 Heat of formation + Delta-G solvation = -179.108652 kcal Electronic energy + Delta-G solvation = -28932.338685 eV Core-core repulsion = 24406.483198 eV Total energy + Delta-G solvation = -4525.855487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.86015 -42.14937 -40.95105 -39.85525 -39.17707 -38.07517 -36.35185 -35.42653 -34.34882 -32.77180 -31.21526 -30.29742 -28.22805 -27.49546 -27.32097 -25.38656 -23.93323 -22.99234 -22.53371 -21.36786 -20.20161 -20.03990 -19.24379 -18.47202 -17.92519 -17.52981 -17.39479 -17.03186 -16.97480 -16.64017 -16.53098 -16.04891 -15.99677 -15.73646 -15.54458 -15.31508 -15.26959 -15.05719 -14.73401 -14.11796 -14.01723 -13.83211 -13.61039 -13.46109 -13.33943 -13.10184 -13.09417 -12.81990 -12.58877 -12.34791 -12.32483 -12.17370 -11.75326 -11.70970 -11.32105 -10.87930 -10.81688 -10.59882 -10.38234 -9.62904 -8.88005 -8.52520 -6.20412 -0.12817 0.40535 0.48892 1.20134 1.36167 1.45328 1.51181 2.01226 2.12516 2.50343 2.61241 2.75314 3.02656 3.11582 3.31616 3.40232 3.69732 3.88923 4.00946 4.14170 4.16905 4.28193 4.49188 4.49850 4.50771 4.58401 4.66637 4.80549 4.82930 4.93421 4.95240 4.95648 5.05942 5.17458 5.21447 5.28514 5.30164 5.33874 5.81994 5.89585 5.99256 6.21941 6.23185 6.60517 6.82548 6.90746 7.58270 8.67658 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.002836 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.687994 B = 9869.184006 C =12013.356894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.076 3.924 4 H 0.085 0.915 5 C -0.168 4.168 6 C 0.115 3.885 7 N -0.679 5.679 8 C 0.514 3.486 9 O -0.541 6.541 10 C 0.505 3.495 11 O -0.523 6.523 12 N -0.623 5.623 13 C 0.047 3.953 14 C -0.042 4.042 15 C -0.201 4.201 16 C 0.133 3.867 17 F -0.141 7.141 18 C -0.263 4.263 19 C 0.136 3.864 20 O -0.203 6.203 21 C -0.418 4.418 22 H 0.103 0.897 23 C -0.011 4.011 24 N -0.905 5.905 25 Si 1.014 2.986 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.259 1.259 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.420 0.580 38 H 0.421 0.579 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.139 0.861 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 -3.823 -12.302 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.325 6.325 3 C 0.018 3.982 4 H 0.103 0.897 5 C -0.226 4.226 6 C -0.008 4.008 7 N -0.332 5.332 8 C 0.294 3.706 9 O -0.418 6.418 10 C 0.287 3.713 11 O -0.399 6.399 12 N -0.268 5.268 13 C -0.047 4.047 14 C -0.062 4.062 15 C -0.221 4.221 16 C 0.113 3.887 17 F -0.120 7.120 18 C -0.284 4.284 19 C 0.082 3.918 20 O -0.108 6.108 21 C -0.494 4.494 22 H 0.120 0.880 23 C -0.211 4.211 24 N -0.541 5.541 25 Si 0.834 3.166 26 H -0.182 1.182 27 H -0.196 1.196 28 H -0.184 1.184 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.258 0.742 38 H 0.259 0.741 39 H 0.173 0.827 40 H 0.183 0.817 41 H 0.156 0.844 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.413 -3.730 -12.654 19.539 hybrid contribution 0.578 0.599 0.929 1.248 sum -13.835 -3.131 -11.725 18.403 Atomic orbital electron populations 1.22989 0.79434 1.03787 1.01053 1.87950 1.21434 1.27816 1.95261 1.22423 0.93096 0.85513 0.97134 0.89699 1.22184 1.03520 1.02501 0.94420 1.21877 0.98114 1.01584 0.79177 1.45559 1.10184 1.65456 1.12003 1.19750 0.85447 0.79320 0.86092 1.90808 1.24608 1.49404 1.77024 1.20299 0.84542 0.79288 0.87146 1.90715 1.23115 1.49297 1.76812 1.42900 1.12549 1.59227 1.12096 1.17128 1.03801 1.00758 0.83053 1.20734 0.95591 0.91901 0.97952 1.20870 1.04559 1.05828 0.90817 1.17477 0.96843 0.94225 0.80157 1.91442 1.94590 1.85348 1.40621 1.20944 1.05860 1.03397 0.98205 1.19202 0.91331 0.89050 0.92228 1.83927 1.46823 1.44528 1.35511 1.21754 1.16979 1.24912 0.85726 0.87955 1.26488 0.96402 0.96278 1.01885 1.70146 1.28731 1.31153 1.24118 0.84703 0.77817 0.78476 0.75654 1.18155 1.19582 1.18370 0.93110 0.92639 0.88952 0.90714 0.89931 0.91873 0.88727 0.90718 0.74209 0.74137 0.82742 0.81746 0.84380 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.40 -6.67 10.09 -148.98 -1.50 -8.18 16 3 C 0.08 1.03 2.81 30.60 0.09 1.12 16 4 H 0.09 0.91 7.79 -2.39 -0.02 0.89 16 5 C -0.17 -1.71 9.53 71.99 0.69 -1.02 16 6 C 0.12 2.17 5.37 86.38 0.46 2.63 16 7 N -0.68 -16.02 5.44 -464.54 -2.53 -18.55 16 8 C 0.51 16.31 7.88 87.23 0.69 17.00 16 9 O -0.54 -20.23 16.48 -3.28 -0.05 -20.28 16 10 C 0.50 17.76 7.61 87.23 0.66 18.42 16 11 O -0.52 -18.36 14.23 -3.40 -0.05 -18.41 16 12 N -0.62 -24.79 5.18 -304.42 -1.58 -26.37 16 13 C 0.05 1.95 6.28 38.32 0.24 2.19 16 14 C -0.04 -1.46 8.65 22.38 0.19 -1.27 16 15 C -0.20 -6.51 10.02 22.33 0.22 -6.29 16 16 C 0.13 4.90 7.30 22.38 0.16 5.07 16 17 F -0.14 -4.90 17.26 44.97 0.78 -4.13 16 18 C -0.26 -11.34 9.11 22.41 0.20 -11.13 16 19 C 0.14 6.41 6.67 22.71 0.15 6.57 16 20 O -0.20 -11.27 9.30 -22.43 -0.21 -11.48 16 21 C -0.42 -23.02 9.44 67.92 0.64 -22.38 16 22 H 0.10 5.21 5.30 -2.91 -0.02 5.19 16 23 C -0.01 -0.57 5.49 84.83 0.47 -0.11 16 24 N -0.91 -52.72 13.67 21.61 0.30 -52.42 16 25 Si 1.01 41.23 29.55 68.60 2.03 43.26 16 26 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 27 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 28 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 29 H 0.05 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.05 0.43 7.87 -2.39 -0.02 0.41 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.60 7.87 -2.38 -0.02 0.59 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.42 8.83 7.82 -92.71 -0.72 8.10 16 38 H 0.42 17.86 8.03 -92.71 -0.74 17.11 16 39 H 0.16 4.87 6.48 -2.91 -0.02 4.85 16 40 H 0.17 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.14 6.03 5.71 -2.91 -0.02 6.01 16 42 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -68.47 371.51 2.91 -65.56 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.37 Total: 38.73 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.10 Total: 12.27 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -3.81 Total: -97.34 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -1.81 Total: -58.35 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.78 Total: -4.13 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -68.47 2.91 -65.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786010092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.547 kcal (2) G-P(sol) polarization free energy of solvation -68.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds