Wall clock time and date at job start Tue Mar 31 2020 23:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42895 * 113.99856 * 2 1 4 4 H 1.09003 * 110.54502 * 27.38446 * 3 2 1 5 5 C 1.54098 * 110.49009 * 264.76853 * 3 2 1 6 6 O 1.43746 * 107.29224 * 243.35728 * 5 3 2 7 7 C 1.44377 * 106.97775 * 333.48479 * 6 5 3 8 8 C 1.54815 * 110.48511 * 150.00091 * 3 2 1 9 9 H 1.08998 * 110.93596 * 21.34814 * 8 3 2 10 10 N 1.46502 * 110.90748 * 257.75182 * 8 3 2 11 11 C 1.34774 * 119.99865 * 160.83858 * 10 8 3 12 12 O 1.21596 * 120.00201 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00076 * 180.02562 * 11 10 8 14 14 C 1.40135 * 120.00431 * 175.63166 * 13 11 10 15 15 C 1.38699 * 120.07270 * 34.59245 * 14 13 11 16 16 C 1.38196 * 120.02258 * 179.97438 * 15 14 13 17 17 C 1.38545 * 120.17166 * 359.97438 * 16 15 14 18 18 F 1.35101 * 119.92244 * 179.97438 * 17 16 15 19 19 C 1.38340 * 120.15385 * 359.72397 * 17 16 15 20 20 C 1.38740 * 119.97410 * 0.55275 * 19 17 16 21 21 O 1.35782 * 120.08557 * 179.72164 * 20 19 17 22 22 C 1.34803 * 117.00129 * 5.43325 * 21 20 19 23 23 H 1.07996 * 120.00237 * 354.95216 * 22 21 20 24 24 C 1.38638 * 119.99831 * 174.95719 * 22 21 20 25 25 N 1.31568 * 120.00099 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99922 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46993 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47053 * 239.99782 * 26 24 22 29 29 H 1.48496 * 109.47618 * 119.99559 * 26 24 22 30 30 H 1.08997 * 109.46731 * 59.99695 * 1 2 3 31 31 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46754 * 300.00142 * 1 2 3 33 33 H 1.08998 * 109.88140 * 123.93025 * 5 3 2 34 34 H 1.09000 * 109.87591 * 2.77588 * 5 3 2 35 35 H 1.09002 * 110.61572 * 281.56069 * 7 6 5 36 36 H 1.08995 * 110.75786 * 158.62859 * 7 6 5 37 37 H 0.96997 * 119.99774 * 340.84510 * 10 8 3 38 38 H 0.97003 * 119.99646 * 355.62959 * 13 11 10 39 39 H 1.08002 * 119.98989 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.91584 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.01812 * 180.27306 * 19 17 16 42 42 H 0.96999 * 119.99797 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0235 0.4695 5 6 2.3499 1.7447 -1.4375 6 8 3.7766 1.9043 -1.5097 7 6 4.2340 2.2156 -0.1761 8 6 3.3780 1.2896 0.7251 9 1 3.7927 0.2819 0.7525 10 7 3.2593 1.8404 2.0774 11 6 4.2054 1.5733 2.9993 12 8 5.1578 0.8755 2.7086 13 7 4.0959 2.0797 4.2435 14 6 5.0296 1.7284 5.2277 15 6 6.3553 1.5115 4.8822 16 6 7.2753 1.1658 5.8537 17 6 6.8776 1.0352 7.1744 18 9 7.7812 0.6964 8.1199 19 6 5.5585 1.2559 7.5280 20 6 4.6285 1.5977 6.5569 21 8 3.3320 1.8094 6.9006 22 6 3.0352 1.7825 8.2152 23 1 3.7955 1.5184 8.9353 24 6 1.7537 2.0938 8.6430 25 7 0.8274 2.4159 7.7659 26 14 1.3425 2.0572 10.4648 27 1 2.5498 1.6681 11.2370 28 1 0.2602 1.0699 10.7082 29 1 0.8904 3.4038 10.8974 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8592 2.6918 -1.6614 34 1 2.0262 0.9810 -2.1446 35 1 4.0447 3.2628 0.0599 36 1 5.2936 1.9844 -0.0673 37 1 2.4996 2.3973 2.3092 38 1 3.3707 2.6873 4.4578 39 1 6.6688 1.6137 3.8538 40 1 8.3070 0.9969 5.5827 41 1 5.2518 1.1579 8.5589 42 1 1.0411 2.4352 6.8199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831555120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:11 Heat of formation + Delta-G solvation = -154.035607 kcal Electronic energy + Delta-G solvation = -29550.090894 eV Core-core repulsion = 25025.322656 eV Total energy + Delta-G solvation = -4524.768238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.31385 -40.73775 -39.88197 -38.77302 -37.39687 -36.58906 -34.63438 -34.20244 -32.45049 -30.51405 -29.48775 -28.99187 -27.80587 -26.81009 -25.16909 -23.42080 -22.51179 -21.95682 -21.42010 -20.67805 -18.83288 -18.56119 -17.84621 -17.35584 -17.05976 -16.52388 -16.06702 -15.82862 -15.56816 -15.27229 -15.09129 -15.00614 -14.82536 -14.46101 -14.25841 -14.02287 -13.92980 -13.89547 -13.68432 -13.42568 -12.85576 -12.60471 -12.38672 -12.33033 -12.11608 -11.89318 -11.40349 -11.18643 -10.96560 -10.83590 -10.80676 -10.42012 -10.30125 -10.06117 -9.95959 -9.87165 -9.53881 -9.14577 -8.93138 -7.96681 -7.23016 -6.95806 -4.25075 1.75203 2.03673 2.52845 3.16215 3.21366 3.23728 3.30123 3.32913 3.68723 3.94770 4.00159 4.26864 4.33192 4.45345 4.51050 4.71722 4.83030 4.92884 4.96142 4.99621 5.01610 5.07574 5.16337 5.36329 5.40473 5.48250 5.57312 5.63027 5.67676 5.93547 6.07155 6.20644 6.44083 6.49843 6.58551 6.77607 6.81159 6.84915 6.97264 7.05486 7.36589 7.54490 8.04979 8.18871 8.64524 8.71285 9.33509 10.47494 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.003287 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.606628 B = 8515.800689 C =10789.464657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.046 3.954 4 H 0.084 0.916 5 C 0.030 3.970 6 O -0.367 6.367 7 C 0.038 3.962 8 C 0.137 3.863 9 H 0.118 0.882 10 N -0.736 5.736 11 C 0.707 3.293 12 O -0.578 6.578 13 N -0.664 5.664 14 C 0.073 3.927 15 C -0.048 4.048 16 C -0.226 4.226 17 C 0.130 3.870 18 F -0.150 7.150 19 C -0.254 4.254 20 C 0.161 3.839 21 O -0.193 6.193 22 C -0.471 4.471 23 H 0.088 0.912 24 C 0.015 3.985 25 N -0.878 5.878 26 Si 1.100 2.900 27 H -0.282 1.282 28 H -0.278 1.278 29 H -0.278 1.278 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.398 0.602 38 H 0.408 0.592 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 1.548 -13.752 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.288 6.288 3 C -0.013 4.013 4 H 0.102 0.898 5 C -0.047 4.047 6 O -0.285 6.285 7 C -0.040 4.040 8 C 0.031 3.969 9 H 0.136 0.864 10 N -0.393 5.393 11 C 0.408 3.592 12 O -0.455 6.455 13 N -0.310 5.310 14 C -0.021 4.021 15 C -0.069 4.069 16 C -0.247 4.247 17 C 0.110 3.890 18 F -0.129 7.129 19 C -0.275 4.275 20 C 0.106 3.894 21 O -0.097 6.097 22 C -0.546 4.546 23 H 0.105 0.895 24 C -0.191 4.191 25 N -0.509 5.509 26 Si 0.924 3.076 27 H -0.207 1.207 28 H -0.204 1.204 29 H -0.204 1.204 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.233 0.767 38 H 0.244 0.756 39 H 0.162 0.838 40 H 0.142 0.858 41 H 0.162 0.838 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.517 0.994 -13.232 13.280 hybrid contribution 0.274 0.403 -0.365 0.609 sum -0.243 1.397 -13.597 13.671 Atomic orbital electron populations 1.22895 0.80396 1.03423 1.00217 1.88022 1.20176 1.25814 1.94799 1.23728 0.95200 0.86462 0.95888 0.89809 1.23631 0.83152 1.01328 0.96639 1.88946 1.20019 1.91648 1.27901 1.23985 1.00614 0.98252 0.81172 1.22311 0.93857 1.00165 0.80607 0.86414 1.44892 1.26874 1.56663 1.10831 1.15820 0.82954 0.80015 0.80431 1.90900 1.32518 1.42562 1.79503 1.42137 1.31449 1.49222 1.08217 1.16638 0.88791 1.11688 0.85025 1.20674 0.89574 0.96909 0.99730 1.20516 1.00432 1.12673 0.91032 1.17463 0.86263 0.99667 0.85624 1.91418 1.66952 1.90009 1.64507 1.20866 0.91648 1.13412 1.01575 1.18647 0.85022 0.94682 0.91084 1.83615 1.19551 1.78073 1.28502 1.22323 1.00235 1.52510 0.79552 0.89490 1.26560 0.89984 0.94249 1.08312 1.70566 1.34938 1.41038 1.04346 0.83005 0.76277 0.77665 0.70623 1.20700 1.20407 1.20378 0.93840 0.89123 0.93475 0.91428 0.88538 0.91499 0.87415 0.76727 0.75646 0.83837 0.85771 0.83823 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.37 -4.08 10.32 -35.23 -0.36 -4.44 16 3 C 0.05 0.44 3.27 -25.20 -0.08 0.36 16 4 H 0.08 0.63 7.41 -51.93 -0.38 0.24 16 5 C 0.03 0.26 7.52 37.73 0.28 0.55 16 6 O -0.37 -4.19 11.52 -35.23 -0.41 -4.59 16 7 C 0.04 0.41 7.41 38.21 0.28 0.69 16 8 C 0.14 1.60 3.15 -65.92 -0.21 1.40 16 9 H 0.12 1.70 7.66 -51.93 -0.40 1.30 16 10 N -0.74 -9.01 5.23 -56.71 -0.30 -9.30 16 11 C 0.71 11.59 8.41 -86.92 -0.73 10.86 16 12 O -0.58 -11.08 13.50 5.28 0.07 -11.00 16 13 N -0.66 -11.52 5.20 -14.07 -0.07 -11.59 16 14 C 0.07 1.48 6.33 -83.44 -0.53 0.95 16 15 C -0.05 -0.91 8.69 -39.43 -0.34 -1.26 16 16 C -0.23 -4.16 10.02 -39.48 -0.40 -4.55 16 17 C 0.13 2.58 7.29 -39.43 -0.29 2.29 16 18 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 19 C -0.25 -5.55 9.14 -39.36 -0.36 -5.91 16 20 C 0.16 3.66 6.66 -38.94 -0.26 3.40 16 21 O -0.19 -4.90 8.71 0.03 0.00 -4.90 16 22 C -0.47 -12.34 9.49 30.88 0.29 -12.05 16 23 H 0.09 2.20 5.20 -52.49 -0.27 1.92 16 24 C 0.01 0.38 5.49 -17.52 -0.10 0.28 16 25 N -0.88 -24.05 13.70 55.48 0.76 -23.29 16 26 Si 1.10 22.55 29.92 -169.99 -5.09 17.46 16 27 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 28 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 29 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.36 8.11 -51.93 -0.42 -0.07 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.80 7.97 -51.93 -0.41 0.39 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.40 3.88 8.36 -40.82 -0.34 3.54 16 38 H 0.41 6.53 8.58 -40.82 -0.35 6.18 16 39 H 0.14 2.61 6.19 -52.49 -0.32 2.29 16 40 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.14 3.18 5.64 -52.49 -0.30 2.88 16 42 H 0.28 7.68 7.97 -40.82 -0.33 7.35 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -31.32 362.27 -6.09 -37.41 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -4.86 Total: 13.30 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.33 Total: -1.67 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.39 Total: -44.19 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.70 Total: -24.94 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.09 Total: 17.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.32 -6.09 -37.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831555120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.629 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds