Wall clock time and date at job start Tue Mar 31 2020 23:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42895 * 113.99856 * 2 1 4 4 H 1.09003 * 110.54502 * 27.38446 * 3 2 1 5 5 C 1.54098 * 110.49009 * 264.76853 * 3 2 1 6 6 O 1.43746 * 107.29224 * 243.35728 * 5 3 2 7 7 C 1.44377 * 106.97775 * 333.48479 * 6 5 3 8 8 C 1.54815 * 110.48511 * 150.00091 * 3 2 1 9 9 H 1.08998 * 110.93596 * 21.34814 * 8 3 2 10 10 N 1.46502 * 110.90748 * 257.75182 * 8 3 2 11 11 C 1.34774 * 119.99865 * 160.83858 * 10 8 3 12 12 O 1.21596 * 120.00201 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00076 * 180.02562 * 11 10 8 14 14 C 1.40135 * 120.00431 * 175.63166 * 13 11 10 15 15 C 1.38699 * 120.07270 * 34.59245 * 14 13 11 16 16 C 1.38196 * 120.02258 * 179.97438 * 15 14 13 17 17 C 1.38545 * 120.17166 * 359.97438 * 16 15 14 18 18 F 1.35101 * 119.92244 * 179.97438 * 17 16 15 19 19 C 1.38340 * 120.15385 * 359.72397 * 17 16 15 20 20 C 1.38740 * 119.97410 * 0.55275 * 19 17 16 21 21 O 1.35782 * 120.08557 * 179.72164 * 20 19 17 22 22 C 1.34803 * 117.00129 * 5.43325 * 21 20 19 23 23 H 1.07996 * 120.00237 * 354.95216 * 22 21 20 24 24 C 1.38638 * 119.99831 * 174.95719 * 22 21 20 25 25 N 1.31568 * 120.00099 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99922 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46993 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47053 * 239.99782 * 26 24 22 29 29 H 1.48496 * 109.47618 * 119.99559 * 26 24 22 30 30 H 1.08997 * 109.46731 * 59.99695 * 1 2 3 31 31 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46754 * 300.00142 * 1 2 3 33 33 H 1.08998 * 109.88140 * 123.93025 * 5 3 2 34 34 H 1.09000 * 109.87591 * 2.77588 * 5 3 2 35 35 H 1.09002 * 110.61572 * 281.56069 * 7 6 5 36 36 H 1.08995 * 110.75786 * 158.62859 * 7 6 5 37 37 H 0.96997 * 119.99774 * 340.84510 * 10 8 3 38 38 H 0.97003 * 119.99646 * 355.62959 * 13 11 10 39 39 H 1.08002 * 119.98989 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.91584 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.01812 * 180.27306 * 19 17 16 42 42 H 0.96999 * 119.99797 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0235 0.4695 5 6 2.3499 1.7447 -1.4375 6 8 3.7766 1.9043 -1.5097 7 6 4.2340 2.2156 -0.1761 8 6 3.3780 1.2896 0.7251 9 1 3.7927 0.2819 0.7525 10 7 3.2593 1.8404 2.0774 11 6 4.2054 1.5733 2.9993 12 8 5.1578 0.8755 2.7086 13 7 4.0959 2.0797 4.2435 14 6 5.0296 1.7284 5.2277 15 6 6.3553 1.5115 4.8822 16 6 7.2753 1.1658 5.8537 17 6 6.8776 1.0352 7.1744 18 9 7.7812 0.6964 8.1199 19 6 5.5585 1.2559 7.5280 20 6 4.6285 1.5977 6.5569 21 8 3.3320 1.8094 6.9006 22 6 3.0352 1.7825 8.2152 23 1 3.7955 1.5184 8.9353 24 6 1.7537 2.0938 8.6430 25 7 0.8274 2.4159 7.7659 26 14 1.3425 2.0572 10.4648 27 1 2.5498 1.6681 11.2370 28 1 0.2602 1.0699 10.7082 29 1 0.8904 3.4038 10.8974 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8592 2.6918 -1.6614 34 1 2.0262 0.9810 -2.1446 35 1 4.0447 3.2628 0.0599 36 1 5.2936 1.9844 -0.0673 37 1 2.4996 2.3973 2.3092 38 1 3.3707 2.6873 4.4578 39 1 6.6688 1.6137 3.8538 40 1 8.3070 0.9969 5.5827 41 1 5.2518 1.1579 8.5589 42 1 1.0411 2.4352 6.8199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831555120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:10 Heat of formation + Delta-G solvation = -177.103739 kcal Electronic energy + Delta-G solvation = -29551.091203 eV Core-core repulsion = 25025.322656 eV Total energy + Delta-G solvation = -4525.768547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.88461 -41.99107 -41.07875 -40.22164 -38.26823 -38.14493 -35.78482 -35.67551 -34.34722 -31.55785 -31.04933 -30.04947 -29.10102 -27.45979 -27.05169 -24.59273 -23.87770 -23.32391 -22.45906 -22.00714 -20.58128 -19.92514 -19.34106 -18.60226 -18.04664 -17.66372 -17.41456 -16.94902 -16.77028 -16.64097 -16.54507 -16.21047 -15.91896 -15.80887 -15.58036 -15.54577 -15.50222 -15.18582 -15.04036 -14.64781 -14.16327 -13.89264 -13.59140 -13.39143 -13.03956 -12.84523 -12.67710 -12.57994 -12.53768 -12.41906 -11.97396 -11.94115 -11.67958 -11.47696 -11.11512 -11.04035 -10.81755 -10.78876 -10.16946 -9.62851 -8.96468 -8.84563 -6.26222 0.12991 0.39002 1.32354 1.51103 1.61874 1.76746 1.90729 2.28756 2.55103 2.63492 2.76341 2.99824 3.06122 3.09483 3.32380 3.36903 3.70056 3.73957 3.87015 4.05649 4.08721 4.10895 4.28532 4.40590 4.48769 4.50431 4.53484 4.67733 4.70439 4.72915 4.83381 4.86103 5.02429 5.13189 5.16867 5.26983 5.37814 5.49179 5.68227 5.77397 5.93830 6.08312 6.22199 6.78346 6.80135 7.32029 7.47818 8.49048 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.003287 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.606628 B = 8515.800689 C =10789.464657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.398 6.398 3 C 0.051 3.949 4 H 0.109 0.891 5 C 0.030 3.970 6 O -0.386 6.386 7 C 0.045 3.955 8 C 0.132 3.868 9 H 0.086 0.914 10 N -0.716 5.716 11 C 0.707 3.293 12 O -0.605 6.605 13 N -0.663 5.663 14 C 0.079 3.921 15 C -0.049 4.049 16 C -0.200 4.200 17 C 0.123 3.877 18 F -0.144 7.144 19 C -0.262 4.262 20 C 0.135 3.865 21 O -0.222 6.222 22 C -0.489 4.489 23 H 0.088 0.912 24 C -0.030 4.030 25 N -0.907 5.907 26 Si 1.143 2.857 27 H -0.266 1.266 28 H -0.272 1.272 29 H -0.268 1.268 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.414 0.586 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.134 0.866 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 2.088 -14.603 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.318 6.318 3 C -0.008 4.008 4 H 0.126 0.874 5 C -0.047 4.047 6 O -0.304 6.304 7 C -0.033 4.033 8 C 0.026 3.974 9 H 0.105 0.895 10 N -0.373 5.373 11 C 0.408 3.592 12 O -0.485 6.485 13 N -0.311 5.311 14 C -0.017 4.017 15 C -0.070 4.070 16 C -0.220 4.220 17 C 0.103 3.897 18 F -0.122 7.122 19 C -0.283 4.283 20 C 0.082 3.918 21 O -0.128 6.128 22 C -0.564 4.564 23 H 0.106 0.894 24 C -0.229 4.229 25 N -0.540 5.540 26 Si 0.960 3.040 27 H -0.190 1.190 28 H -0.197 1.197 29 H -0.193 1.193 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.250 0.750 38 H 0.250 0.750 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.152 0.848 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.125 1.543 -14.132 14.216 hybrid contribution 0.363 0.168 -0.292 0.495 sum 0.238 1.711 -14.424 14.527 Atomic orbital electron populations 1.23067 0.78848 1.04148 1.01389 1.87988 1.21975 1.26821 1.94977 1.23775 0.94222 0.86606 0.96223 0.87351 1.23795 0.81924 1.02896 0.96041 1.88924 1.21702 1.91870 1.27947 1.23892 0.99753 0.98851 0.80808 1.22339 0.95892 0.98838 0.80324 0.89544 1.44724 1.26188 1.55993 1.10418 1.15911 0.83284 0.79650 0.80392 1.90872 1.33914 1.43765 1.79950 1.42125 1.31285 1.49466 1.08183 1.16869 0.89854 1.10171 0.84800 1.20905 0.89011 0.96579 1.00487 1.20927 1.01951 1.09219 0.89885 1.17465 0.85652 1.00178 0.86442 1.91434 1.66447 1.89940 1.64415 1.20940 0.92693 1.13505 1.01146 1.19011 0.84686 0.95753 0.92393 1.83602 1.20879 1.80333 1.28025 1.22594 1.00649 1.52891 0.80279 0.89446 1.28083 0.89847 0.93289 1.11635 1.70671 1.35524 1.43991 1.03857 0.82533 0.76837 0.78256 0.66328 1.19009 1.19727 1.19346 0.91580 0.88795 0.93317 0.88583 0.88216 0.89591 0.88582 0.74990 0.75002 0.82579 0.82245 0.84822 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.40 -8.36 10.32 -148.98 -1.54 -9.90 16 3 C 0.05 0.87 3.27 31.59 0.10 0.97 16 4 H 0.11 1.30 7.41 -2.39 -0.02 1.29 16 5 C 0.03 0.46 7.52 72.35 0.54 1.01 16 6 O -0.39 -8.22 11.52 -148.98 -1.72 -9.94 16 7 C 0.04 0.91 7.41 72.67 0.54 1.45 16 8 C 0.13 2.99 3.15 46.29 0.15 3.14 16 9 H 0.09 2.54 7.66 -2.39 -0.02 2.52 16 10 N -0.72 -16.84 5.23 -451.59 -2.36 -19.20 16 11 C 0.71 22.79 8.41 179.06 1.51 24.30 16 12 O -0.61 -22.92 13.50 -4.02 -0.05 -22.98 16 13 N -0.66 -22.91 5.20 -316.70 -1.65 -24.56 16 14 C 0.08 3.15 6.33 38.22 0.24 3.39 16 15 C -0.05 -1.78 8.69 22.37 0.19 -1.59 16 16 C -0.20 -6.82 10.02 22.33 0.22 -6.60 16 17 C 0.12 4.70 7.29 22.37 0.16 4.86 16 18 F -0.14 -5.22 17.26 44.97 0.78 -4.45 16 19 C -0.26 -11.50 9.14 22.41 0.20 -11.29 16 20 C 0.13 6.21 6.66 22.68 0.15 6.36 16 21 O -0.22 -11.64 8.71 -22.82 -0.20 -11.84 16 22 C -0.49 -26.34 9.49 67.92 0.64 -25.70 16 23 H 0.09 4.54 5.20 -2.91 -0.02 4.53 16 24 C -0.03 -1.59 5.49 84.83 0.47 -1.12 16 25 N -0.91 -51.05 13.70 21.61 0.30 -50.75 16 26 Si 1.14 45.46 29.92 68.60 2.05 47.51 16 27 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 28 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 29 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 0.66 8.11 -2.39 -0.02 0.64 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.46 7.97 -2.39 -0.02 1.44 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.41 7.42 8.36 -92.71 -0.77 6.64 16 38 H 0.41 13.32 8.58 -92.71 -0.80 12.53 16 39 H 0.16 5.35 6.19 -2.91 -0.02 5.33 16 40 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 41 H 0.13 6.06 5.64 -2.91 -0.02 6.04 16 42 H 0.27 15.22 7.97 -92.71 -0.74 14.48 16 Total: -1.00 -69.09 362.27 1.53 -67.56 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.43 Total: 37.82 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.36 Total: 0.72 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -3.71 Total: -94.51 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -3.51 Total: -54.66 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.05 Total: 47.51 kcal Total: -69.09 1.53 -67.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831555120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.546 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds