Wall clock time and date at job start Tue Mar 31 2020 23:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47548 * 326.60869 * 3 2 1 5 5 C 1.36872 * 120.00564 * 265.04397 * 4 3 2 6 6 H 1.07996 * 120.00158 * 144.44693 * 5 4 3 7 7 C 1.39045 * 119.99521 * 324.43889 * 5 4 3 8 8 N 1.31369 * 119.99969 * 156.76909 * 7 5 4 9 9 Si 1.86808 * 120.00327 * 336.77306 * 7 5 4 10 10 H 1.48500 * 109.47167 * 92.71877 * 9 7 5 11 11 H 1.48496 * 109.46944 * 212.72244 * 9 7 5 12 12 H 1.48497 * 109.46771 * 332.72424 * 9 7 5 13 13 C 1.34780 * 119.99716 * 85.03759 * 4 3 2 14 14 O 1.21595 * 120.00236 * 354.32664 * 13 4 3 15 15 C 1.47747 * 120.00139 * 174.32463 * 13 4 3 16 16 C 1.39557 * 120.11172 * 153.29160 * 15 13 4 17 17 C 1.38619 * 119.76195 * 179.97438 * 16 15 13 18 18 N 1.39714 * 120.00088 * 180.02562 * 17 16 15 19 19 C 1.46498 * 119.99808 * 355.20854 * 18 17 16 20 20 C 1.46498 * 120.00281 * 174.93238 * 18 17 16 21 21 C 1.39037 * 120.00166 * 0.27598 * 17 16 15 22 22 C 1.38224 * 120.22840 * 359.44652 * 21 17 16 23 23 C 1.50703 * 119.87877 * 180.27508 * 22 21 17 24 24 F 1.39902 * 109.46862 * 180.27681 * 23 22 21 25 25 F 1.39899 * 109.47573 * 300.27370 * 23 22 21 26 26 F 1.39904 * 109.47055 * 60.28154 * 23 22 21 27 27 C 1.38001 * 120.23488 * 0.55760 * 22 21 17 28 28 H 4.40640 * 5.51318 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47244 * 206.61263 * 3 2 1 30 30 H 1.09001 * 109.47580 * 86.61123 * 3 2 1 31 31 H 0.96996 * 119.99516 * 179.97438 * 8 7 5 32 32 H 1.07999 * 120.12391 * 0.02562 * 16 15 13 33 33 H 1.09002 * 109.47194 * 89.99912 * 19 18 17 34 34 H 1.09001 * 109.47509 * 209.99912 * 19 18 17 35 35 H 1.09010 * 109.47152 * 329.99820 * 19 18 17 36 36 H 1.09001 * 109.46763 * 4.36515 * 20 18 17 37 37 H 1.09000 * 109.47042 * 124.36192 * 20 18 17 38 38 H 1.08996 * 109.47115 * 244.35986 * 20 18 17 39 39 H 1.08004 * 119.88750 * 179.72127 * 21 17 16 40 40 H 1.08004 * 119.99825 * 179.74586 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1523 0.7601 5 6 3.4596 -1.0126 2.0824 6 1 3.2660 -1.8190 2.7741 7 6 4.0389 0.1677 2.5350 8 7 3.9398 0.5048 3.8008 9 14 4.9579 1.2742 1.3430 10 1 4.0286 2.2976 0.8007 11 1 6.0753 1.9467 2.0532 12 1 5.5004 0.4576 0.2277 13 6 3.2649 -2.3508 0.1574 14 8 2.8803 -2.5011 -0.9863 15 6 3.8748 -3.4820 0.8862 16 6 3.5375 -4.7941 0.5512 17 6 4.1145 -5.8500 1.2395 18 7 3.7808 -7.1656 0.9079 19 6 2.7445 -7.4282 -0.0939 20 6 4.4714 -8.2825 1.5574 21 6 5.0213 -5.5999 2.2633 22 6 5.3596 -4.3004 2.5912 23 6 6.3481 -4.0385 3.6981 24 9 6.5244 -2.6588 3.8491 25 9 5.8639 -4.5802 4.8937 26 9 7.5737 -4.6331 3.3793 27 6 4.7910 -3.2419 1.9124 28 1 -1.0498 -0.0002 0.0003 29 1 3.0089 0.9196 0.4604 30 1 3.0094 -0.0599 -1.0258 31 1 4.3442 1.3279 4.1165 32 1 2.8301 -4.9863 -0.2419 33 1 3.2011 -7.4878 -1.0819 34 1 2.2488 -8.3716 0.1348 35 1 2.0127 -6.6204 -0.0799 36 1 5.1500 -7.8969 2.3182 37 1 3.7386 -8.9407 2.0242 38 1 5.0392 -8.8408 0.8132 39 1 5.4663 -6.4239 2.8013 40 1 5.0550 -2.2280 2.1745 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847179522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:17 Heat of formation + Delta-G solvation = -75.192111 kcal Electronic energy + Delta-G solvation = -30344.318993 eV Core-core repulsion = 25711.882150 eV Total energy + Delta-G solvation = -4632.436843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.11857 -48.61565 -48.59092 -41.48585 -40.06080 -37.24057 -37.19088 -34.54988 -33.63572 -32.94798 -31.39628 -29.51493 -28.44998 -27.17208 -26.67929 -25.76591 -23.92612 -22.10341 -21.01305 -20.37381 -19.48166 -19.45628 -19.29228 -18.16971 -17.79036 -17.53707 -17.36767 -16.69819 -16.42618 -16.04561 -15.89965 -15.73727 -15.49694 -15.32278 -15.02022 -14.97649 -14.82455 -14.73845 -14.68691 -14.67408 -14.37458 -13.89835 -13.84914 -13.52110 -13.31396 -13.14633 -12.91573 -12.89405 -12.78739 -12.36784 -12.08099 -12.03406 -11.54928 -11.28137 -11.00231 -10.93596 -10.60020 -10.17062 -9.98450 -8.57753 -8.27176 -6.13452 -0.23069 0.31180 1.16105 1.31362 1.40787 1.58240 1.66461 1.84000 1.91187 2.13298 2.16036 2.62024 2.72360 2.77111 2.94555 3.14874 3.48527 3.58014 3.72743 3.97693 4.14197 4.19661 4.26899 4.30777 4.36366 4.42980 4.58003 4.60980 4.68896 4.81212 4.92615 4.94369 5.01264 5.03835 5.23003 5.26535 5.45056 5.58060 5.96407 6.14666 6.28285 6.39621 6.68720 6.83990 7.23439 7.58967 8.55205 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.005577 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.747750 B = 5019.488793 C = 7161.893000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.231 4.231 3 C 0.196 3.804 4 N -0.454 5.454 5 C -0.347 4.347 6 H 0.089 0.911 7 C 0.039 3.961 8 N -0.872 5.872 9 Si 0.905 3.095 10 H -0.252 1.252 11 H -0.275 1.275 12 H -0.257 1.257 13 C 0.512 3.488 14 O -0.607 6.607 15 C -0.081 4.081 16 C -0.124 4.124 17 C 0.203 3.797 18 N -0.640 5.640 19 C 0.090 3.910 20 C 0.085 3.915 21 C -0.132 4.132 22 C -0.159 4.159 23 C 0.514 3.486 24 F -0.181 7.181 25 F -0.177 7.177 26 F -0.174 7.174 27 C -0.093 4.093 28 H 0.258 0.742 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.284 0.716 32 H 0.136 0.864 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.161 0.839 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -13.510 -2.626 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.232 4.232 3 C 0.074 3.926 4 N -0.172 5.172 5 C -0.474 4.474 6 H 0.107 0.893 7 C -0.168 4.168 8 N -0.507 5.507 9 Si 0.729 3.271 10 H -0.178 1.178 11 H -0.201 1.201 12 H -0.181 1.181 13 C 0.304 3.696 14 O -0.494 6.494 15 C -0.084 4.084 16 C -0.148 4.148 17 C 0.101 3.899 18 N -0.352 5.352 19 C -0.053 4.053 20 C -0.057 4.057 21 C -0.155 4.155 22 C -0.161 4.161 23 C 0.460 3.540 24 F -0.162 7.162 25 F -0.159 7.159 26 F -0.155 7.155 27 C -0.114 4.114 28 H 0.274 0.726 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.178 0.822 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.383 -13.615 -3.016 14.014 hybrid contribution 0.381 1.108 0.104 1.176 sum 1.764 -12.508 -2.913 12.963 Atomic orbital electron populations 1.25701 0.96531 0.98321 0.99532 1.23801 0.95459 1.02349 1.01593 1.18793 0.85461 0.90619 0.97707 1.43649 1.55644 1.07553 1.10367 1.18943 1.42064 1.04243 0.82115 0.89327 1.25771 0.96266 0.97773 0.97008 1.69796 1.39937 1.24335 1.16591 0.86493 0.79829 0.80243 0.80555 1.17757 1.20106 1.18056 1.18534 0.81354 0.84169 0.85589 1.90610 1.55121 1.84450 1.19201 1.19471 0.98658 0.93121 0.97150 1.20931 1.02410 0.90032 1.01399 1.17375 0.93942 0.85562 0.93024 1.46459 1.42109 1.01412 1.45198 1.21764 0.89989 1.02608 0.90926 1.21917 0.97659 0.88033 0.98100 1.20625 1.00687 0.95302 0.98870 1.19646 1.01426 0.95726 0.99325 1.18196 0.80176 0.73826 0.81798 1.93217 1.95620 1.31416 1.95989 1.93185 1.87932 1.85813 1.48940 1.93186 1.45963 1.83688 1.92712 1.21825 0.95197 1.00684 0.93669 0.72586 0.88970 0.88594 0.90590 0.84587 0.92801 0.88762 0.92419 0.90338 0.90715 0.91384 0.82176 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.54 19.25 74.32 1.43 -5.10 16 2 C -0.23 -9.96 13.62 31.12 0.42 -9.54 16 3 C 0.20 8.87 4.44 84.57 0.38 9.24 16 4 N -0.45 -22.30 2.18 -648.82 -1.41 -23.71 16 5 C -0.35 -17.97 6.49 84.10 0.55 -17.43 16 6 H 0.09 4.97 6.51 -2.91 -0.02 4.95 16 7 C 0.04 2.00 5.21 84.96 0.44 2.45 16 8 N -0.87 -46.94 13.95 21.68 0.30 -46.64 16 9 Si 0.90 39.57 25.12 68.60 1.72 41.29 16 10 H -0.25 -10.25 6.53 99.48 0.65 -9.60 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.51 24.77 7.38 86.76 0.64 25.41 16 14 O -0.61 -30.81 16.36 -4.01 -0.07 -30.88 16 15 C -0.08 -3.46 5.53 -20.11 -0.11 -3.57 16 16 C -0.12 -4.46 8.71 22.68 0.20 -4.27 16 17 C 0.20 6.03 6.54 38.17 0.25 6.28 16 18 N -0.64 -14.11 3.41 -747.40 -2.55 -16.66 16 19 C 0.09 1.63 10.12 127.77 1.29 2.92 16 20 C 0.08 1.24 10.63 127.77 1.36 2.60 16 21 C -0.13 -3.88 8.85 22.46 0.20 -3.68 16 22 C -0.16 -5.66 5.36 -19.92 -0.11 -5.76 16 23 C 0.51 17.60 3.31 71.24 0.24 17.83 16 24 F -0.18 -7.21 15.96 44.97 0.72 -6.49 16 25 F -0.18 -5.82 17.23 44.97 0.77 -5.05 16 26 F -0.17 -5.32 17.24 44.97 0.78 -4.55 16 27 C -0.09 -3.93 7.19 22.55 0.16 -3.77 16 28 H 0.26 6.19 7.80 -4.43 -0.03 6.16 16 29 H 0.09 4.12 3.25 -2.39 -0.01 4.11 16 30 H 0.10 4.14 7.66 -2.39 -0.02 4.12 16 31 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.14 4.75 6.09 -2.91 -0.02 4.73 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.17 8.07 -2.39 -0.02 1.15 16 35 H 0.06 1.21 6.41 -2.38 -0.02 1.20 16 36 H 0.08 1.13 5.30 -2.39 -0.01 1.11 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.16 3.63 5.72 -2.91 -0.02 3.62 16 40 H 0.15 7.27 4.40 -2.91 -0.01 7.26 16 Total: -1.00 -64.53 348.78 8.66 -55.87 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.06 Total: 23.20 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 7.34 Total: 13.62 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.66 Total: -87.01 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.07 Total: -30.88 kcal Atomic # 9 Polarization: -18.36 SS G_CDS: 2.27 Total: -16.09 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.72 Total: 41.29 kcal Total: -64.53 8.66 -55.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847179522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.327 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds