Wall clock time and date at job start Tue Mar 31 2020 23:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38498 * 125.83776 * 2 1 4 4 C 1.40123 * 125.92329 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00099 * 6.21491 * 4 3 2 6 6 C 1.40038 * 119.99675 * 186.21615 * 4 3 2 7 7 N 1.30793 * 120.00386 * 6.49904 * 6 4 3 8 8 Si 1.86797 * 119.99730 * 186.50218 * 6 4 3 9 9 H 1.48504 * 109.47380 * 84.99040 * 8 6 4 10 10 H 1.48496 * 109.47480 * 324.99008 * 8 6 4 11 11 H 1.48501 * 109.47158 * 204.98742 * 8 6 4 12 12 N 1.32233 * 108.14951 * 180.26427 * 3 2 1 13 13 N 1.40169 * 107.75892 * 359.62009 * 12 3 2 14 14 C 1.46492 * 126.14813 * 180.11427 * 13 12 3 15 15 N 1.46898 * 109.47466 * 270.31338 * 14 13 12 16 16 C 1.46524 * 111.00104 * 43.85857 * 15 14 13 17 17 C 1.53525 * 110.94707 * 183.76089 * 16 15 14 18 18 C 1.52391 * 107.81737 * 302.28725 * 17 16 15 19 19 H 1.08992 * 110.01447 * 300.46265 * 18 17 16 20 20 C 1.54180 * 112.88759 * 177.39055 * 18 17 16 21 21 S 1.83977 * 101.45180 * 197.90594 * 20 18 17 22 22 C 1.83619 * 97.38970 * 23.20857 * 21 20 18 23 23 C 1.53181 * 103.87065 * 3.83982 * 22 21 20 24 24 H 1.09002 * 108.97387 * 86.63628 * 23 22 21 25 25 C 1.47399 * 110.99947 * 169.99866 * 15 14 13 26 26 C 1.34725 * 125.83406 * 180.02562 * 2 1 3 27 27 S 1.71204 * 125.97274 * 0.02562 * 26 2 1 28 28 H 1.08996 * 109.47184 * 90.00048 * 1 2 3 29 29 H 1.09005 * 109.47149 * 210.00392 * 1 2 3 30 30 H 1.09001 * 109.46972 * 330.00277 * 1 2 3 31 31 H 0.96993 * 120.00500 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47224 * 30.31478 * 14 13 12 33 33 H 1.09001 * 109.47300 * 150.31107 * 14 13 12 34 34 H 1.09003 * 109.18259 * 304.14540 * 16 15 14 35 35 H 1.09000 * 109.17969 * 63.38782 * 16 15 14 36 36 H 1.08997 * 109.79621 * 182.70284 * 17 16 15 37 37 H 1.09004 * 109.78801 * 61.86111 * 17 16 15 38 38 H 1.09002 * 111.02713 * 79.86564 * 20 18 17 39 39 H 1.09001 * 111.03371 * 315.95758 * 20 18 17 40 40 H 1.09003 * 110.54659 * 245.24226 * 22 21 20 41 41 H 1.09000 * 110.67026 * 122.49336 * 22 21 20 42 42 H 1.08998 * 109.75768 * 294.51700 * 25 15 14 43 43 H 1.08998 * 109.75655 * 55.21998 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8374 2.4536 -0.0005 5 1 0.7853 2.6755 0.1003 6 6 2.7634 3.4959 -0.1318 7 7 4.0190 3.2277 -0.3809 8 14 2.2053 5.2693 0.0491 9 1 2.2023 5.6433 1.4863 10 1 0.8347 5.4158 -0.5032 11 1 3.1352 6.1589 -0.6918 12 7 3.5357 0.7210 -0.0058 13 7 3.5375 -0.6807 -0.0007 14 6 4.7215 -1.5433 -0.0021 15 7 5.1166 -1.8306 -1.3875 16 6 5.0642 -0.6194 -2.2104 17 6 5.3867 -0.9380 -3.6771 18 6 6.7670 -1.5824 -3.7217 19 1 7.5104 -0.9009 -3.3083 20 6 7.1832 -2.0108 -5.1431 21 16 8.5433 -3.1964 -4.7837 22 6 8.0330 -3.6302 -3.0741 23 6 6.7156 -2.8729 -2.8808 24 1 5.8957 -3.4871 -3.2532 25 6 6.4322 -2.4935 -1.4349 26 6 2.2538 -1.0922 -0.0005 27 16 1.7192 -2.7187 -0.0018 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 4.6605 3.9495 -0.4715 32 1 5.5395 -1.0384 0.5117 33 1 4.4914 -2.4770 0.5112 34 1 4.0652 -0.1875 -2.1489 35 1 5.7891 0.1017 -1.8327 36 1 5.3896 -0.0186 -4.2626 37 1 4.6440 -1.6285 -4.0767 38 1 7.5482 -1.1591 -5.7171 39 1 6.3601 -2.5046 -5.6596 40 1 8.7783 -3.2911 -2.3546 41 1 7.8738 -4.7045 -2.9810 42 1 7.2021 -1.8106 -1.0756 43 1 6.4159 -3.3895 -0.8145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872720062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:55 Heat of formation + Delta-G solvation = 83.674966 kcal Electronic energy + Delta-G solvation = -25991.274297 eV Core-core repulsion = 22518.072761 eV Total energy + Delta-G solvation = -3473.201536 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01644 -39.43982 -35.84274 -34.15859 -33.52432 -32.17626 -30.84504 -28.96084 -27.68487 -26.65333 -26.21505 -24.38789 -22.24385 -22.13601 -21.06500 -20.77856 -19.86654 -17.78937 -16.80466 -16.57962 -16.10310 -15.77396 -15.29161 -15.21683 -14.89457 -14.75688 -14.50431 -14.21026 -13.75913 -13.47806 -13.33076 -12.97136 -12.66933 -12.35266 -12.21504 -12.17471 -12.06086 -11.90326 -11.85343 -11.56931 -11.14911 -11.03257 -10.78562 -10.71114 -10.60316 -10.54826 -10.39685 -10.11900 -9.96752 -9.64090 -9.27888 -8.97721 -8.06361 -7.83063 -7.15198 -6.77132 -6.71259 -5.22985 1.69863 2.18480 2.28483 2.53287 2.71725 2.85447 2.88279 3.31973 3.43415 3.58034 3.93507 4.11946 4.45353 4.48278 4.64586 4.74728 4.91840 5.08516 5.13259 5.20846 5.30449 5.38399 5.43603 5.47264 5.50957 5.51778 5.61882 5.74485 5.78985 5.81324 5.90990 5.93222 6.05403 6.13424 6.19807 6.40557 6.44122 6.49532 6.72204 6.93041 7.13269 7.13540 7.54452 7.71995 8.15068 8.26170 9.05262 9.82655 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003712 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.544270 B = 7541.671868 C = 9147.260560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.518 5.518 3 C 0.378 3.622 4 C -0.438 4.438 5 H 0.098 0.902 6 C 0.079 3.921 7 N -0.738 5.738 8 Si 0.927 3.073 9 H -0.265 1.265 10 H -0.259 1.259 11 H -0.274 1.274 12 N -0.348 5.348 13 N -0.385 5.385 14 C 0.334 3.666 15 N -0.550 5.550 16 C 0.068 3.932 17 C -0.100 4.100 18 C -0.095 4.095 19 H 0.083 0.917 20 C -0.057 4.057 21 S -0.311 6.311 22 C -0.057 4.057 23 C -0.094 4.094 24 H 0.092 0.908 25 C 0.080 3.920 26 C 0.480 3.520 27 S -0.700 6.700 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.286 0.714 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.039 0.961 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -1.644 -4.174 6.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.219 5.219 3 C 0.129 3.871 4 C -0.480 4.480 5 H 0.116 0.884 6 C -0.147 4.147 7 N -0.362 5.362 8 Si 0.751 3.249 9 H -0.189 1.189 10 H -0.183 1.183 11 H -0.198 1.198 12 N -0.180 5.180 13 N -0.171 5.171 14 C 0.122 3.878 15 N -0.277 5.277 16 C -0.060 4.060 17 C -0.140 4.140 18 C -0.115 4.115 19 H 0.101 0.899 20 C -0.205 4.205 21 S -0.084 6.084 22 C -0.205 4.205 23 C -0.113 4.113 24 H 0.110 0.890 25 C -0.049 4.049 26 C 0.112 3.888 27 S -0.576 6.576 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.057 0.943 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.949 -2.958 -5.089 9.107 hybrid contribution -1.031 2.385 1.000 2.784 sum 5.918 -0.573 -4.089 7.216 Atomic orbital electron populations 1.21757 0.75352 1.04098 1.03060 1.46015 1.08281 1.05006 1.62579 1.21262 0.84085 0.88499 0.93254 1.18356 0.96076 0.85644 1.47903 0.88440 1.25812 0.94268 1.01974 0.92673 1.69842 1.02591 1.35458 1.28333 0.85988 0.79833 0.79517 0.79612 1.18946 1.18301 1.19846 1.79339 1.14126 0.82276 1.42257 1.49058 1.03456 1.07051 1.57547 1.21723 0.83462 0.92881 0.89707 1.61675 1.27827 1.28100 1.10143 1.21939 1.03075 0.89641 0.91373 1.21528 0.94733 1.00696 0.97023 1.22164 0.99146 0.97499 0.92703 0.89909 1.24125 0.97528 0.99187 0.99700 1.87636 1.41334 1.59077 1.20344 1.23733 0.99237 1.03377 0.94162 1.21738 0.96801 0.96154 0.96651 0.88958 1.21749 0.88867 0.98881 0.95432 1.22920 0.84759 0.92430 0.88679 1.92767 1.84941 0.99054 1.80793 0.91428 0.89186 0.89838 0.90316 0.92099 0.87000 0.89685 0.94303 0.91000 0.90925 0.88096 0.88948 0.88975 0.88365 0.94304 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.67 59.85 0.64 2.37 16 2 N -0.52 -11.30 3.17 -124.65 -0.39 -11.69 16 3 C 0.38 8.85 7.47 -155.28 -1.16 7.69 16 4 C -0.44 -9.75 8.99 -38.20 -0.34 -10.10 16 5 H 0.10 1.96 7.08 -52.49 -0.37 1.59 16 6 C 0.08 1.71 5.49 -17.32 -0.10 1.61 16 7 N -0.74 -16.89 11.96 55.55 0.66 -16.23 16 8 Si 0.93 15.95 29.57 -169.99 -5.03 10.93 16 9 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 10 H -0.26 -4.34 7.11 56.52 0.40 -3.94 16 11 H -0.27 -4.68 7.11 56.52 0.40 -4.27 16 12 N -0.35 -8.31 9.62 31.21 0.30 -8.01 16 13 N -0.38 -8.44 2.57 -65.06 -0.17 -8.61 16 14 C 0.33 6.11 6.27 -63.33 -0.40 5.71 16 15 N -0.55 -9.09 4.81 -238.63 -1.15 -10.23 16 16 C 0.07 1.18 4.85 -3.76 -0.02 1.16 16 17 C -0.10 -1.40 5.63 -26.77 -0.15 -1.55 16 18 C -0.10 -1.13 2.23 -89.74 -0.20 -1.33 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 20 C -0.06 -0.62 6.87 37.77 0.26 -0.36 16 21 S -0.31 -3.70 23.28 -107.50 -2.50 -6.20 16 22 C -0.06 -0.58 6.92 37.25 0.26 -0.32 16 23 C -0.09 -1.09 2.17 -90.38 -0.20 -1.29 16 24 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 25 C 0.08 1.02 5.01 -3.99 -0.02 1.00 16 26 C 0.48 11.03 7.84 -86.94 -0.68 10.35 16 27 S -0.70 -16.87 29.50 -107.50 -3.17 -20.04 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.54 7.62 -51.93 -0.40 1.15 16 30 H 0.08 1.26 7.27 -51.93 -0.38 0.88 16 31 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 32 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.11 2.04 7.65 -51.93 -0.40 1.64 16 34 H 0.08 1.84 6.30 -51.93 -0.33 1.52 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -28.25 366.05 -14.52 -42.78 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.49 Total: 6.86 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: -2.11 Total: 14.94 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.75 Total: -54.77 kcal Atomic # 14 Polarization: 15.95 SS G_CDS: -5.03 Total: 10.93 kcal Atomic # 16 Polarization: -20.57 SS G_CDS: -5.67 Total: -26.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.25 -14.52 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872720062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.453 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds